abbreviation officialName equation geneAssociation ecocyc-rxn-ids analysis notes 12DGR120tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C12:0 )" 12dgr120[p] --> 12dgr120[c] 12DGR140tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:0 )" 12dgr140[p] --> 12dgr140[c] 12DGR141tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C14:1 )" 12dgr141[p] --> 12dgr141[c] 12DGR160tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:0 )" 12dgr160[p] --> 12dgr160[c] 12DGR161tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C16:1 )" 12dgr161[p] --> 12dgr161[c] 12DGR180tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:0 )" 12dgr180[p] --> 12dgr180[c] 12DGR181tipp "1,2 diacylglycerol transport via flipping ( periplasm to cytoplasm, n-C18:1 )" 12dgr181[p] --> 12dgr181[c] 12PPDRtpp "( R )-Propane-1,2-diol facilitated transport ( periplasm )" 12ppd-R[p] <==> 12ppd-R[c] ( :UNMAPPED-CPDS ) 12PPDStpp "( S )-Propane-1,2-diol facilitated transport ( periplasm )" 12ppd-S[p] <==> 12ppd-S[c] 23DAPPAt2pp "2,3-diaminopropionate transport in via proton symport" 23dappa[p] + h[p] --> 23dappa[c] + h[c] 4PCPpp "tetrapeptide L,D-carboxypeptidase ( periplasm )" [p] : LalaDgluMdapDala + h2o --> LalaDgluMdap + ala-D ( :UNMAPPED-CPDS ) AACTOOR Aminoacetone:oxygen oxidoreductase( deaminating )( flavin-containing ) [c] : aact + h2o + o2 --> h2o2 + mthgxl + nh4 ( AMACETOXID-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ACALDtpp acetaldehyde reversible transport ( periplasm ) acald[p] <==> acald[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) ACGAL1PPpp N-acetyl-D-galactosamine 1-phosphatase ( periplasm ) [p] : acgal1p + h2o --> acgal + pi ACGAM1PPpp N-acetyl-D-glucosamine 1-phosphatase ( periplasm ) [p] : acgam1p + h2o --> acgam + pi ACM6PH N-acetylmuramate 6-phosphate hydrolase [c] : acmum6p + h2o --> acgam6p + lac-D ACOLIPAtex arabinose modified core oligosaccharide lipid A transport via vector ( periplasm to extracellular ) acolipa[p] --> acolipa[e] ACONIs aconitate isomerase ( spontaneous ) [c] : acon-T <==> acon-C ( RXN0-2442 ) ACt2rpp acetate reversible transport via proton symport ( periplasm ) ac[p] + h[p] <==> ac[c] + h[c] ( RXN0-1981 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) AGM4PCPpp "N-Acetyl-D-glucosamine( anhydrous )N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase ( periplasmic )" [p] : anhgm4p + h2o --> ala-D + anhgm3p ( :UNMAPPED-CPDS ) ALATA_L L-alanine transaminase [c] : akg + ala-L <==> glu-L + pyr ( ALANINE-AMINOTRANSFERASE-RXN ) ALDD4 "aldehyde dehydrogenase ( butanal, NAD )" [c] : btal + h2o + nad --> but + ( 2 ) h + nadh AOBUTDs L-2-amino-3-oxobutanoate decarboxylation [c] : 2aobut + h --> aact + co2 ( THREOSPON-RXN ) ( ( LEFT REMOVE PROTON ) ) ARBTNexs aerobactin Fe-loading reaction ( spontaneous ) [e] : arbtn + fe3 --> arbtn-fe3 ( :UNMAPPED-CPDS ) ARBTNR1 aerobactin reductase [c] : ( 2 ) arbtn-fe3 + fadh2 --> ( 2 ) arbtn + fad + ( 2 ) fe2 + ( 2 ) h ( :UNMAPPED-CPDS ) ARBTNR2 aerobactin reductase [c] : ( 2 ) arbtn-fe3 + fmnh2 --> ( 2 ) arbtn + ( 2 ) fe2 + fmn + ( 2 ) h ( :UNMAPPED-CPDS ) ARBTNR3 aerobactin reductase [c] : ( 2 ) arbtn-fe3 + rbflvrd --> ( 2 ) arbtn + ( 2 ) fe2 + ( 2 ) h + ribflv ( :UNMAPPED-CPDS ) ARBTNtex aerobactin secretion ( to extracellular ) arbtn[p] + h[p] --> arbtn[e] + h[c] ARBTNtonex aerobactin transport via ton system ( extracellular ) arbtn-fe3[e] + h[p] --> arbtn-fe3[p] + h[c] ( :UNMAPPED-CPDS ) ARBTNtpp aerobactin secretion ( to periplasm ) arbtn[c] + h[p] --> arbtn[p] + h[c] ASNabcpp L-asparagine transport via ABC system ( periplasm ) asn-L[p] + atp[c] + h2o[c] --> adp[c] + asn-L[c] + h[c] + pi[c] ATPHs ATP spontanous amine hydrolysis [c] : atp + h + h2o --> itp + nh4 ( ATP-DEAMINASE-RXN ) ( :METACYC ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ATPM ATP maintenance requirement [c] : atp + h2o --> adp + h + pi ( RXN0-1061 3.6.3.1-RXN 3.6.3.15-RXN 3.6.3.46-RXN 3.6.3.49-RXN 3.6.3.50-RXN 3.6.3.51-RXN 3.6.3.52-RXN 3.6.4.1-RXN 3.6.4.2-RXN 3.6.4.3-RXN 3.6.4.4-RXN 3.6.4.5-RXN 3.6.4.6-RXN 3.6.4.7-RXN 3.6.4.8-RXN 3.6.4.9-RXN 3.6.4.11-RXN ADENOSINETRIPHOSPHATASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) BPNT "3',5'-bisphosphate nucleotidase" [c] : h2o + pap --> amp + pi "( |3'( 2' ),5'-BISPHOSPHATE-NUCLEOTIDASE-RXN| )" ( :METACYC ) CLIPAtex cold lipid A transport via vector ( periplasm to extracellular ) lipa_cold[p] --> lipa_cold[e] CLPNH120pp "cardiolipin hydrolase ( periplasm, n-C12:0 )" [p] : clpn120 + h2o --> h + pa120 + pg120 CLPNH140pp "cardiolipin hydrolase ( periplasm, n-C14:0 )" [p] : clpn140 + h2o --> h + pa140 + pg140 CLPNH141pp "cardiolipin hydrolase ( periplasm, n-C14:1 )" [p] : clpn141 + h2o --> h + pa141 + pg141 CLPNH160pp "cardiolipin hydrolase ( periplasm, n-C16:0 )" [p] : clpn160 + h2o --> h + pa160 + pg160 CLPNH161pp "cardiolipin hydrolase ( periplasm, n-C16:1 )" [p] : clpn161 + h2o --> h + pa161 + pg161 CLPNH180pp "cardiolipin hydrolase ( periplasm, n-C18:0 )" [p] : clpn180 + h2o --> h + pa180 + pg180 CLPNH181pp "cardiolipin hydrolase ( periplasm, n-C18:1 )" [p] : clpn181 + h2o --> h + pa181 + pg181 CMPN CMP nucleosidase [c] : cmp + h2o --> csn + r5p CO2tpp CO2 transporter via diffusion ( periplasm ) co2[p] <==> co2[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) COLIPAtex core oligosaccharide lipid A transport via vector ( periplasm to extracellular ) colipa[p] --> colipa[e] CPGNexs coprogen Fe-loading reaction ( spontaneaous ) [e] : cpgn-un + fe3 --> cpgn ( :UNMAPPED-CPDS ) CPGNR1 coprogen( Fe( III ) ) reductase [c] : ( 2 ) cpgn + fadh2 --> ( 2 ) cpgn-un + fad + ( 2 ) fe2 + ( 2 ) h ( :UNMAPPED-CPDS ) CPGNR2 coprogen( Fe( III ) ) reductase [c] : ( 2 ) cpgn + fmnh2 --> ( 2 ) cpgn-un + ( 2 ) fe2 + fmn + ( 2 ) h ( :UNMAPPED-CPDS ) CPGNR3 coprogen( Fe( III ) ) reductase [c] : ( 2 ) cpgn + rbflvrd --> ( 2 ) cpgn-un + ( 2 ) fe2 + ( 2 ) h + ribflv ( :UNMAPPED-CPDS ) CPGNUtex coprogen unloaded secretion ( extracellular ) cpgn-un[p] + h[p] --> cpgn-un[e] + h[c] ( :UNMAPPED-CPDS ) CPGNUtpp coprogen unloaded secretion cpgn-un[c] + h[p] --> cpgn-un[p] + h[c] ( :UNMAPPED-CPDS ) CYSabcpp L-cysteine uptake via ABC system ( periplasm ) atp[c] + cys-L[p] + h2o[c] --> adp[c] + cys-L[c] + h[c] + pi[c] CYSDabcpp D-cysteine uptake via ABC system ( periplasm ) atp[c] + cys-D[p] + h2o[c] --> adp[c] + cys-D[c] + h[c] + pi[c] DAPabcpp M-diaminopimelic acid ABC transport ( periplasm ) 26dap-M[p] + atp[c] + h2o[c] --> 26dap-M[c] + adp[c] + h[c] + pi[c] DATPHs dATP spontanous amine hydrolysis [c] : datp + h + h2o --> ditp + nh4 DHAtpp Dihydroxyacetone transport via facilitated diffusion ( periplasm ) dha[p] <==> dha[c] DHBSH "2,3-dihydroxybenzoylserine hydrolase" [c] : 23dhbzs + h2o --> 23dhb + ser-L DHPTDCs "4,5-dihydroxy-2,3-pentanedione cyclization ( spontaneous )" [c] : dhptd --> h2o + hmfurn ( :UNMAPPED-CPDS ) DKMPPD "2,3-diketo-5-methylthio-1-phosphopentane degradation reaction" [c] : dkmpp + h2o + o2 --> 2kmb + for + ( 2 ) h + pi DKMPPD3 "2,3-diketo-5-methylthio-1-phosphopentane degradation reaction" [c] : dkmpp + ( 3 ) h2o + ( 2 ) nad --> 2kmb + for + ( 4 ) h + ( 2 ) nadh + pi DM_4HBA Sink needed to allow 4-hydroxy-benzoate to leave system [c] : 4hba --> ( :EXCHANGE ) DM_5DRIB Sink needed to allow 5'-deoxyribose to leave system [c] : 5drib --> ( :EXCHANGE ) DM_AACALD Sink needed to allow aminoacetaldehyde to leave system [c] : aacald --> ( :EXCHANGE ) DM_HMFURN Sink needed to allow 4-hydroxy-5-methyl-3( 2H )-furanone to leave system [c] : hmfurn --> ( :EXCHANGE ) DM_OXAM Sink needed to allow oxamate to leave system [c] : oxam --> ( :EXCHANGE ) DNMPPA Dihydroneopterin monophosphate dephosphorylase [c] : dhpmp + h2o --> dhnpt + pi ( DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN ) ECA4COLIPAtex enterobacterial common antigen ( x4 ) core oligosaccharide lipid A transport ( periplasm to extracellular ) eca4colipa[p] --> eca4colipa[e] ( :UNMAPPED-CPDS ) ENLIPAtex phosphoethanolamine lipid A transport via vector ( periplasm to extracellular ) enlipa[p] --> enlipa[e] ETHAt2pp ethanolamine transport in via proton symport etha[p] + h[p] --> etha[c] + h[c] ETOHt2rpp ethanol reversible transport via proton symport ( periplasm ) etoh[p] + h[p] <==> etoh[c] + h[c] EX_12ppd-R( e ) "( R )-Propane-1,2-diol exchange" [e] : 12ppd-R <==> ( :EXCHANGE ) EX_12ppd-S( e ) "( S )-Propane-1,2-diol exchange" [e] : 12ppd-S <==> ( :EXCHANGE ) EX_14glucan( e ) "1,4-alpha-D-glucan exchange" [e] : 14glucan <==> ( :EXCHANGE ) EX_15dap( e ) "1,5-Diaminopentane exchange" [e] : 15dap <==> ( :EXCHANGE ) EX_23camp( e ) "2',3'-Cyclic AMP exchange" [e] : 23camp <==> ( :EXCHANGE ) EX_23ccmp( e ) "2',3'-Cyclic CMP exchange" [e] : 23ccmp <==> ( :EXCHANGE ) EX_23cgmp( e ) "2',3'-Cyclic GMP exchange" [e] : 23cgmp <==> ( :EXCHANGE ) EX_23cump( e ) "2',3'-Cyclic UMP exchange" [e] : 23cump <==> ( :EXCHANGE ) EX_23dappa( e ) "2,3-diaminopropionate exchange" [e] : 23dappa <==> ( :EXCHANGE ) EX_26dap-M( e ) "meso-2,6-Diaminoheptanedioate exchange" [e] : 26dap-M <==> ( :EXCHANGE ) EX_2ddglcn( e ) 2-Dehydro-3-deoxy-D-gluconate exchange [e] : 2ddglcn <==> ( :EXCHANGE ) EX_34dhpac( e ) "3,4-Dihydroxyphenylacetaldehyde exchange" [e] : 34dhpac <==> ( :EXCHANGE ) EX_3amp( e ) 3'-AMP exchange [e] : 3amp <==> ( :EXCHANGE ) EX_3cmp( e ) 3'-cmp exchange [e] : 3cmp <==> ( :EXCHANGE ) EX_3gmp( e ) 3'-GMP exchange [e] : 3gmp <==> ( :EXCHANGE ) EX_3hcinnm( e ) 3-hydroxycinnamic acid exchange [e] : 3hcinnm <==> ( :EXCHANGE ) EX_3hpppn( e ) 3-( 3-hydroxy-phenyl )propionate exchange [e] : 3hpppn <==> ( :EXCHANGE ) EX_3ump( e ) 3'-UMP exchange [e] : 3ump <==> ( :EXCHANGE ) EX_4abut( e ) 4-Aminobutanoate exchange [e] : 4abut <==> ( :EXCHANGE ) EX_4hoxpacd( e ) 4-Hydroxyphenylacetaldehyde exchange [e] : 4hoxpacd <==> ( :EXCHANGE ) EX_5dglcn( e ) 5-Dehydro-D-gluconate exchange [e] : 5dglcn <==> ( :EXCHANGE ) EX_ac( e ) Acetate exchange [e] : ac <==> ( :EXCHANGE ) EX_acac( e ) Acetoacetate exchange [e] : acac <==> ( :EXCHANGE ) EX_acald( e ) Acetaldehyde exchange [e] : acald <==> ( :EXCHANGE ) EX_acgal( e ) N-Acetyl-D-galactosamine exchange [e] : acgal <==> ( :EXCHANGE ) EX_acgal1p( e ) N-Acetyl-D-galactosamine 1-phosphate exchange [e] : acgal1p <==> ( :EXCHANGE ) EX_acgam( e ) N-Acetyl-D-glucosamine exchange [e] : acgam <==> ( :EXCHANGE ) EX_acgam1p( e ) N-Acetyl-D-glucosamine 1-phosphate exchange [e] : acgam1p <==> ( :EXCHANGE ) EX_acmana( e ) N-Acetyl-D-mannosamine exchange [e] : acmana <==> ( :EXCHANGE ) EX_acmum( e ) N-Acetylmuramate exchange [e] : acmum <==> ( :EXCHANGE ) EX_acnam( e ) N-Acetylneuraminate exchange [e] : acnam <==> ( :EXCHANGE ) EX_acolipa( e ) 4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A exchange [e] : acolipa <==> ( :EXCHANGE ) EX_acser( e ) O-Acetyl-L-serine exchange [e] : acser <==> ( :EXCHANGE ) EX_ade( e ) Adenine exchange [e] : ade <==> ( :EXCHANGE ) EX_adn( e ) Adenosine exchange [e] : adn <==> ( :EXCHANGE ) EX_adocbl( e ) Adenosylcobalamin exchange [e] : adocbl <==> ( :EXCHANGE ) EX_ag( e ) silver exchange [e] : ag <==> ( :EXCHANGE ) EX_agm( e ) Agmatine exchange [e] : agm <==> ( :EXCHANGE ) EX_akg( e ) 2-Oxoglutarate exchange [e] : akg <==> ( :EXCHANGE ) EX_alaala( e ) D-Alanyl-D-alanine exchange [e] : alaala <==> ( :EXCHANGE ) EX_ala-B( e ) beta-Alanine exchange [e] : ala-B <==> ( :EXCHANGE ) EX_ala-D( e ) D-Alanine exchange [e] : ala-D <==> ( :EXCHANGE ) EX_ala-L( e ) L-Alanine exchange [e] : ala-L <==> ( :EXCHANGE ) EX_all-D( e ) D-Allose exchange [e] : all-D <==> ( :EXCHANGE ) EX_alltn( e ) Allantoin exchange [e] : alltn <==> ( :EXCHANGE ) EX_amp( e ) AMP exchange [e] : amp <==> ( :EXCHANGE ) EX_anhgm( e ) N-Acetyl-D-glucosamine( anhydrous )N-Acetylmuramic acid exchange [e] : anhgm <==> ( :EXCHANGE ) EX_arab-L( e ) L-Arabinose exchange [e] : arab-L <==> ( :EXCHANGE ) EX_arbtn( e ) aerobactin minus Fe3 exchange [e] : arbtn <==> ( :EXCHANGE ) EX_arbtn-fe3( e ) Aerobactin exchange [e] : arbtn-fe3 <==> ( :EXCHANGE ) EX_arg-L( e ) L-Arginine exchange [e] : arg-L <==> ( :EXCHANGE ) EX_ascb-L( e ) L-Ascorbate exchange [e] : ascb-L <==> ( :EXCHANGE ) EX_asn-L( e ) L-Asparagine exchange [e] : asn-L <==> ( :EXCHANGE ) EX_aso3( e ) arsenite exchange [e] : aso3 <==> ( :EXCHANGE ) EX_asp-L( e ) L-Aspartate exchange [e] : asp-L <==> ( :EXCHANGE ) EX_but( e ) Butyrate ( n-C4:0 ) exchange [e] : but <==> ( :EXCHANGE ) EX_butso3( e ) butanesulfonate exchange [e] : butso3 <==> ( :EXCHANGE ) EX_ca2( e ) Calcium exchange [e] : ca2 <==> ( :EXCHANGE ) EX_cbi( e ) Cobinamide exchange [e] : cbi <==> ( :EXCHANGE ) EX_cbl1( e ) Cob( I )alamin exchange [e] : cbl1 <==> ( :EXCHANGE ) EX_cd2( e ) Cadmium exchange [e] : cd2 <==> ( :EXCHANGE ) EX_cgly( e ) Cys-Gly exchange [e] : cgly <==> ( :EXCHANGE ) EX_chol( e ) Choline exchange [e] : chol <==> ( :EXCHANGE ) EX_cit( e ) Citrate exchange [e] : cit <==> ( :EXCHANGE ) EX_cl( e ) Chloride exchange [e] : cl <==> ( :EXCHANGE ) EX_cmp( e ) CMP exchange [e] : cmp <==> ( :EXCHANGE ) EX_co2( e ) CO2 exchange [e] : co2 <==> ( :EXCHANGE ) EX_cobalt2( e ) Co2+ exchange [e] : cobalt2 <==> ( :EXCHANGE ) EX_colipa( e ) core oligosaccharide lipid A exchange [e] : colipa <==> ( :EXCHANGE ) EX_cpgn( e ) coprogen exchange [e] : cpgn <==> ( :EXCHANGE ) EX_cpgn-un( e ) coprogen unloaded ( no Fe( III ) ) exchange [e] : cpgn-un <==> ( :EXCHANGE ) EX_crn( e ) L-Carnitine exchange [e] : crn <==> ( :EXCHANGE ) EX_csn( e ) Cytosine exchange [e] : csn <==> ( :EXCHANGE ) EX_cu( e ) Cu+ exchange [e] : cu <==> ( :EXCHANGE ) EX_cu2( e ) Cu2+ exchange [e] : cu2 <==> ( :EXCHANGE ) EX_cyan( e ) Hydrogen cyanide exchange [e] : cyan <==> ( :EXCHANGE ) EX_cynt( e ) Cyanate exchange [e] : cynt <==> ( :EXCHANGE ) EX_cys-D( e ) D-Cysteine exchange [e] : cys-D <==> ( :EXCHANGE ) EX_cys-L( e ) L-Cysteine exchange [e] : cys-L <==> ( :EXCHANGE ) EX_cytd( e ) Cytidine exchange [e] : cytd <==> ( :EXCHANGE ) EX_dad-2( e ) Deoxyadenosine exchange [e] : dad-2 <==> ( :EXCHANGE ) EX_damp( e ) dAMP exchange [e] : damp <==> ( :EXCHANGE ) EX_dca( e ) Decanoate ( n-C10:0 ) exchange [e] : dca <==> ( :EXCHANGE ) EX_dcmp( e ) dCMP exchange [e] : dcmp <==> ( :EXCHANGE ) EX_dcyt( e ) Deoxycytidine exchange [e] : dcyt <==> ( :EXCHANGE ) EX_ddca( e ) Dodecanoate ( n-C12:0 ) exchange [e] : ddca <==> ( :EXCHANGE ) EX_dgmp( e ) dGMP exchange [e] : dgmp <==> ( :EXCHANGE ) EX_dgsn( e ) Deoxyguanosine exchange [e] : dgsn <==> ( :EXCHANGE ) EX_dha( e ) Dihydroxyacetone exchange [e] : dha <==> ( :EXCHANGE ) EX_dimp( e ) dIMP exchange [e] : dimp <==> ( :EXCHANGE ) EX_din( e ) Deoxyinosine exchange [e] : din <==> ( :EXCHANGE ) EX_dms( e ) Dimethyl sulfide exchange [e] : dms <==> ( :EXCHANGE ) EX_dmso( e ) Dimethyl sulfoxide exchange [e] : dmso <==> ( :EXCHANGE ) EX_dopa( e ) Dopamine exchange [e] : dopa <==> ( :EXCHANGE ) EX_dtmp( e ) dTMP exchange [e] : dtmp <==> ( :EXCHANGE ) EX_dump( e ) dUMP exchange [e] : dump <==> ( :EXCHANGE ) EX_duri( e ) Deoxyuridine exchange [e] : duri <==> ( :EXCHANGE ) EX_eca4colipa( e ) ( enterobacterial common antigen )x4 core oligosaccharide lipid A exchange [e] : eca4colipa <==> ( :EXCHANGE ) EX_enlipa( e ) phosphoethanolamine KDO( 2 )-lipid ( A ) exchange [e] : enlipa <==> ( :EXCHANGE ) EX_enter( e ) Enterochelin exchange [e] : enter <==> ( :EXCHANGE ) EX_etha( e ) Ethanolamine exchange [e] : etha <==> ( :EXCHANGE ) EX_ethso3( e ) ethanesulfonate exchange [e] : ethso3 <==> ( :EXCHANGE ) EX_etoh( e ) Ethanol exchange [e] : etoh <==> ( :EXCHANGE ) EX_f6p( e ) D-fructose 6-phosphate exchange [e] : f6p <==> ( :EXCHANGE ) EX_fald( e ) Formaldehyde exchange [e] : fald <==> ( :EXCHANGE ) EX_fe2( e ) Fe2+ exchange [e] : fe2 <==> ( :EXCHANGE ) EX_fe3( e ) Fe3+ exchange [e] : fe3 <==> ( :EXCHANGE ) EX_fe3dcit( e ) Fe( III )dicitrate exchange [e] : fe3dcit <==> ( :EXCHANGE ) EX_fe3dhbzs( e ) "ferric 2,3-dihydroxybenzoylserine exchange" [e] : fe3dhbzs <==> ( :EXCHANGE ) EX_fe3hox( e ) Fe( III )hydroxamate exchange [e] : fe3hox <==> ( :EXCHANGE ) EX_fe3hox-un( e ) "Fe( III )hydoxamate, unloaded exchange" [e] : fe3hox-un <==> ( :EXCHANGE ) EX_fecrm( e ) Ferrichrome exchange [e] : fecrm <==> ( :EXCHANGE ) EX_fecrm-un( e ) Ferrichrome minus Fe( III ) exchange [e] : fecrm-un <==> ( :EXCHANGE ) EX_feenter( e ) Fe-enterobactin exchange [e] : feenter <==> ( :EXCHANGE ) EX_feoxam( e ) ferroxamine exchange [e] : feoxam <==> ( :EXCHANGE ) EX_feoxam-un( e ) ferroxamine minus Fe( 3 ) exchange [e] : feoxam-un <==> ( :EXCHANGE ) EX_for( e ) Formate exchange [e] : for <==> ( :EXCHANGE ) EX_fru( e ) D-Fructose exchange [e] : fru <==> ( :EXCHANGE ) EX_frulys( e ) fructoselysine exchange [e] : frulys <==> ( :EXCHANGE ) EX_fruur( e ) D-Fructuronate exchange [e] : fruur <==> ( :EXCHANGE ) EX_fuc-L( e ) L-Fucose exchange [e] : fuc-L <==> ( :EXCHANGE ) EX_fum( e ) Fumarate exchange [e] : fum <==> ( :EXCHANGE ) EX_g1p( e ) D-Glucose 1-phosphate exchange [e] : g1p <==> ( :EXCHANGE ) EX_g3pc( e ) sn-Glycero-3-phosphocholine exchange [e] : g3pc <==> ( :EXCHANGE ) EX_g3pe( e ) sn-Glycero-3-phosphoethanolamine exchange [e] : g3pe <==> ( :EXCHANGE ) EX_g3pg( e ) Glycerophosphoglycerol exchange [e] : g3pg <==> ( :EXCHANGE ) EX_g3pi( e ) sn-Glycero-3-phospho-1-inositol exchange [e] : g3pi <==> ( :EXCHANGE ) EX_g3ps( e ) Glycerophosphoserine exchange [e] : g3ps <==> ( :EXCHANGE ) EX_g6p( e ) D-Glucose 6-phosphate exchange [e] : g6p <==> ( :EXCHANGE ) EX_gal( e ) D-Galactose exchange [e] : gal <==> ( :EXCHANGE ) EX_gal1p( e ) alpha-D-Galactose 1-phosphate exchange [e] : gal1p <==> ( :EXCHANGE ) EX_gal-bD( e ) beta D-Galactose exchange [e] : gal-bD <==> ( :EXCHANGE ) EX_galct-D( e ) D-Galactarate exchange [e] : galct-D <==> ( :EXCHANGE ) EX_galctn-D( e ) D-Galactonate exchange [e] : galctn-D <==> ( :EXCHANGE ) EX_galctn-L( e ) L-Galactonate exchange [e] : galctn-L <==> ( :EXCHANGE ) EX_galt( e ) Galactitol exchange [e] : galt <==> ( :EXCHANGE ) EX_galur( e ) D-Galacturonate exchange [e] : galur <==> ( :EXCHANGE ) EX_gam( e ) D-Glucosamine exchange [e] : gam <==> ( :EXCHANGE ) EX_gam6p( e ) D-Glucosamine 6-phosphate exchange [e] : gam6p <==> ( :EXCHANGE ) EX_gbbtn( e ) gamma-butyrobetaine exchange [e] : gbbtn <==> ( :EXCHANGE ) EX_gdp( e ) GDP exchange [e] : gdp <==> ( :EXCHANGE ) EX_glc( e ) D-Glucose exchange [e] : glc-D <==> ( :EXCHANGE ) EX_glcn( e ) D-Gluconate exchange [e] : glcn <==> ( :EXCHANGE ) EX_glcr( e ) D-Glucarate exchange [e] : glcr <==> ( :EXCHANGE ) EX_glcur( e ) D-Glucuronate exchange [e] : glcur <==> ( :EXCHANGE ) EX_glcur1p( e ) D-Glucuronate 1-phosphate exchange [e] : glcur1p <==> ( :EXCHANGE ) EX_gln-L( e ) L-Glutamine exchange [e] : gln-L <==> ( :EXCHANGE ) EX_glu-L( e ) L-Glutamate exchange [e] : glu-L <==> ( :EXCHANGE ) EX_gly( e ) Glycine exchange [e] : gly <==> ( :EXCHANGE ) EX_glyald( e ) D-Glyceraldehyde exchange [e] : glyald <==> ( :EXCHANGE ) EX_glyb( e ) Glycine betaine exchange [e] : glyb <==> ( :EXCHANGE ) EX_glyc( e ) Glycerol exchange [e] : glyc <==> ( :EXCHANGE ) EX_glyc2p( e ) Glycerol 2-phosphate exchange [e] : glyc2p <==> ( :EXCHANGE ) EX_glyc3p( e ) Glycerol 3-phosphate exchange [e] : glyc3p <==> ( :EXCHANGE ) EX_glyclt( e ) Glycolate exchange [e] : glyclt <==> ( :EXCHANGE ) EX_glyc-R( e ) ( R )-Glycerate exchange [e] : glyc-R <==> ( :EXCHANGE ) EX_gmp( e ) GMP exchange [e] : gmp <==> ( :EXCHANGE ) EX_gsn( e ) Guanosine exchange [e] : gsn <==> ( :EXCHANGE ) EX_gthox( e ) Oxidized glutathione exchange [e] : gthox <==> ( :EXCHANGE ) EX_gthrd( e ) Reduced glutathione exchange [e] : gthrd <==> ( :EXCHANGE ) EX_gtp( e ) GTP exchange [e] : gtp <==> ( :EXCHANGE ) EX_gua( e ) Guanine exchange [e] : gua <==> ( :EXCHANGE ) EX_h( e ) H+ exchange [e] : h <==> ( :EXCHANGE ) EX_h2( e ) H2 exchange [e] : h2 <==> ( :EXCHANGE ) EX_h2o( e ) H2O exchange [e] : h2o <==> ( :EXCHANGE ) EX_h2o2( e ) Hydrogen peroxide exchange [e] : h2o2 <==> ( :EXCHANGE ) EX_h2s( e ) Hydrogen sulfide exchange [e] : h2s <==> ( :EXCHANGE ) EX_hacolipa( e ) hepta-acylated core oligosaccharide lipid A ( E. coli ) exchange [e] : hacolipa <==> ( :EXCHANGE ) EX_halipa( e ) hepta-acylated KDO( 2 )-lipid ( A ) exchange [e] : halipa <==> ( :EXCHANGE ) EX_hdca( e ) Hexadecanoate ( n-C16:0 ) exchange [e] : hdca <==> ( :EXCHANGE ) EX_hdcea( e ) hexadecenoate ( n-C16:1 ) exchange [e] : hdcea <==> ( :EXCHANGE ) EX_hg2( e ) Hg2+ exchange [e] : hg2 <==> ( :EXCHANGE ) EX_his-L( e ) L-Histidine exchange [e] : his-L <==> ( :EXCHANGE ) EX_hom-L( e ) L-Homoserine exchange [e] : hom-L <==> ( :EXCHANGE ) EX_hxa( e ) Hexanoate ( n-C6:0 ) exchange [e] : hxa <==> ( :EXCHANGE ) EX_hxan( e ) Hypoxanthine exchange [e] : hxan <==> ( :EXCHANGE ) EX_idon-L( e ) L-Idonate exchange [e] : idon-L <==> ( :EXCHANGE ) EX_ile-L( e ) L-Isoleucine exchange [e] : ile-L <==> ( :EXCHANGE ) EX_imp( e ) IMP exchange [e] : imp <==> ( :EXCHANGE ) EX_indole( e ) Indole exchange [e] : indole <==> ( :EXCHANGE ) EX_inost( e ) myo-Inositol exchange [e] : inost <==> ( :EXCHANGE ) EX_ins( e ) Inosine exchange [e] : ins <==> ( :EXCHANGE ) EX_isetac( e ) Isethionic acid exchange [e] : isetac <==> ( :EXCHANGE ) EX_k( e ) K+ exchange [e] : k <==> ( :EXCHANGE ) EX_kdo2lipid4( e ) KDO( 2 )-lipid IV( A ) exchange [e] : kdo2lipid4 <==> ( :EXCHANGE ) EX_lac-D( e ) D-lactate exchange [e] : lac-D <==> ( :EXCHANGE ) EX_lac-L( e ) L-Lactate exchange [e] : lac-L <==> ( :EXCHANGE ) EX_LalaDgluMdap( e ) "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate exchange" [e] : LalaDgluMdap <==> ( :EXCHANGE ) EX_LalaDgluMdapDala( e ) "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine exchange" [e] : LalaDgluMdapDala <==> ( :EXCHANGE ) EX_lcts( e ) Lactose exchange [e] : lcts <==> ( :EXCHANGE ) EX_leu-L( e ) L-Leucine exchange [e] : leu-L <==> ( :EXCHANGE ) EX_lipa( e ) KDO( 2 )-lipid ( A ) exchange [e] : lipa <==> ( :EXCHANGE ) EX_lipa_cold( e ) cold adapted KDO( 2 )-lipid ( A ) exchange [e] : lipa_cold <==> ( :EXCHANGE ) EX_lys-L( e ) L-Lysine exchange [e] : lys-L <==> ( :EXCHANGE ) EX_lyx-L( e ) L-Lyxose exchange [e] : lyx-L <==> ( :EXCHANGE ) EX_mal-D( e ) D-Malate exchange [e] : mal-D <==> ( :EXCHANGE ) EX_mal-L( e ) L-Malate exchange [e] : mal-L <==> ( :EXCHANGE ) EX_malt( e ) Maltose exchange [e] : malt <==> ( :EXCHANGE ) EX_malthx( e ) Maltohexaose exchange [e] : malthx <==> ( :EXCHANGE ) EX_maltpt( e ) Maltopentaose exchange [e] : maltpt <==> ( :EXCHANGE ) EX_malttr( e ) Maltotriose exchange [e] : malttr <==> ( :EXCHANGE ) EX_maltttr( e ) Maltotetraose exchange [e] : maltttr <==> ( :EXCHANGE ) EX_man( e ) D-Mannose exchange [e] : man <==> ( :EXCHANGE ) EX_man6p( e ) D-Mannose 6-phosphate exchange [e] : man6p <==> ( :EXCHANGE ) EX_manglyc( e ) 2( alpha-D-Mannosyl )-D-glycerate exchange [e] : manglyc <==> ( :EXCHANGE ) EX_melib( e ) Melibiose exchange [e] : melib <==> ( :EXCHANGE ) EX_met-D( e ) D-Methionine exchange [e] : met-D <==> ( :EXCHANGE ) EX_met-L( e ) L-Methionine exchange [e] : met-L <==> ( :EXCHANGE ) EX_metsox-R-L( e ) L-methionine-R-sulfoxide exchange [e] : metsox-R-L <==> ( :EXCHANGE ) EX_metsox-S-L( e ) L-Methionine S-oxide exchange [e] : metsox-S-L <==> ( :EXCHANGE ) EX_mg2( e ) Mg exchange [e] : mg2 <==> ( :EXCHANGE ) EX_minohp( e ) myo-Inositol hexakisphosphate exchange [e] : minohp <==> ( :EXCHANGE ) EX_mmet( e ) S-Methyl-L-methionine exchange [e] : mmet <==> ( :EXCHANGE ) EX_mn2( e ) Mn2+ exchange [e] : mn2 <==> ( :EXCHANGE ) EX_mnl( e ) D-Mannitol exchange [e] : mnl <==> ( :EXCHANGE ) EX_mobd( e ) Molybdate exchange [e] : mobd <==> ( :EXCHANGE ) EX_mso3( e ) methanesulfonate exchange [e] : mso3 <==> ( :EXCHANGE ) EX_n2o( e ) Nitrous oxide exchange [e] : n2o <==> ( :EXCHANGE ) EX_na1( e ) Sodium exchange [e] : na1 <==> ( :EXCHANGE ) EX_nac( e ) Nicotinate exchange [e] : nac <==> ( :EXCHANGE ) EX_nh4( e ) Ammonia exchange [e] : nh4 <==> ( :EXCHANGE ) EX_ni2( e ) Ni2+ exchange [e] : ni2 <==> ( :EXCHANGE ) EX_nmn( e ) NMN exchange [e] : nmn <==> ( :EXCHANGE ) EX_no( e ) Nitric oxide exchange [e] : no <==> ( :EXCHANGE ) EX_no2( e ) Nitrite exchange [e] : no2 <==> ( :EXCHANGE ) EX_no3( e ) Nitrate exchange [e] : no3 <==> ( :EXCHANGE ) EX_o16a4colipa( e ) ( O16 antigen )x4 core oligosaccharide lipid A exchange [e] : o16a4colipa <==> ( :EXCHANGE ) EX_o2( e ) O2 exchange [e] : o2 <==> ( :EXCHANGE ) EX_o2s( e ) Superoxide anion exchange [e] : o2s <==> ( :EXCHANGE ) EX_ocdca( e ) octadecanoate ( n-C18:0 ) exchange [e] : ocdca <==> ( :EXCHANGE ) EX_ocdcea( e ) octadecenoate ( n-C18:1 ) exchange [e] : ocdcea <==> ( :EXCHANGE ) EX_octa( e ) octanoate ( n-C8:0 ) exchange [e] : octa <==> ( :EXCHANGE ) EX_orn( e ) Ornithine exchange [e] : orn <==> ( :EXCHANGE ) EX_orot( e ) Orotate exchange [e] : orot <==> ( :EXCHANGE ) EX_pacald( e ) Phenylacetaldehyde exchange [e] : pacald <==> ( :EXCHANGE ) EX_peamn( e ) Phenethylamine exchange [e] : peamn <==> ( :EXCHANGE ) EX_phe-L( e ) L-Phenylalanine exchange [e] : phe-L <==> ( :EXCHANGE ) EX_pheme( e ) Protoheme exchange [e] : pheme <==> ( :EXCHANGE ) EX_pi( e ) Phosphate exchange [e] : pi <==> ( :EXCHANGE ) EX_pnto-R( e ) ( R )-Pantothenate exchange [e] : pnto-R <==> ( :EXCHANGE ) EX_ppa( e ) Propionate exchange [e] : ppa <==> ( :EXCHANGE ) EX_ppal( e ) Propanal exchange [e] : ppal <==> ( :EXCHANGE ) EX_pppn( e ) Phenylpropanoate exchange [e] : pppn <==> ( :EXCHANGE ) EX_ppt( e ) Phosphonate exchange [e] : ppt <==> ( :EXCHANGE ) EX_progly( e ) L-Prolinylglycine exchange [e] : progly <==> ( :EXCHANGE ) EX_pro-L( e ) L-Proline exchange [e] : pro-L <==> ( :EXCHANGE ) EX_psclys( e ) psicoselysine exchange [e] : psclys <==> ( :EXCHANGE ) EX_pser-L( e ) O-Phospho-L-serine exchange [e] : pser-L <==> ( :EXCHANGE ) EX_ptrc( e ) Putrescine exchange [e] : ptrc <==> ( :EXCHANGE ) EX_pyr( e ) Pyruvate exchange [e] : pyr <==> ( :EXCHANGE ) EX_r5p( e ) alpha-D-Ribose 5-phosphate exchange [e] : r5p <==> ( :EXCHANGE ) EX_rib-D( e ) D-Ribose exchange [e] : rib-D <==> ( :EXCHANGE ) EX_rmn( e ) L-Rhamnose exchange [e] : rmn <==> ( :EXCHANGE ) EX_sbt-D( e ) D-Sorbitol exchange [e] : sbt-D <==> ( :EXCHANGE ) EX_ser-D( e ) D-Serine exchange [e] : ser-D <==> ( :EXCHANGE ) EX_ser-L( e ) L-Serine exchange [e] : ser-L <==> ( :EXCHANGE ) EX_skm( e ) Shikimate exchange [e] : skm <==> ( :EXCHANGE ) EX_so2( e ) sulfur dioxide exchange [e] : so2 <==> ( :EXCHANGE ) EX_so3( e ) Sulfite exchange [e] : so3 <==> ( :EXCHANGE ) EX_so4( e ) Sulfate exchange [e] : so4 <==> ( :EXCHANGE ) EX_spmd( e ) Spermidine exchange [e] : spmd <==> ( :EXCHANGE ) EX_succ( e ) Succinate exchange [e] : succ <==> ( :EXCHANGE ) EX_sucr( e ) Sucrose exchange [e] : sucr <==> ( :EXCHANGE ) EX_sulfac( e ) sulfoacetate exchange [e] : sulfac <==> ( :EXCHANGE ) EX_tartr-L( e ) L-tartrate exchange [e] : tartr-L <==> ( :EXCHANGE ) EX_taur( e ) Taurine exchange [e] : taur <==> ( :EXCHANGE ) EX_tcynt( e ) Thiocyanate exchange [e] : tcynt <==> ( :EXCHANGE ) EX_thm( e ) Thiamin exchange [e] : thm <==> ( :EXCHANGE ) EX_thr-L( e ) L-Threonine exchange [e] : thr-L <==> ( :EXCHANGE ) EX_thrp( e ) L-Threonine O-3-phosphate exchange [e] : thrp <==> ( :EXCHANGE ) EX_thym( e ) Thymine exchange [e] : thym <==> ( :EXCHANGE ) EX_thymd( e ) Thymidine exchange [e] : thymd <==> ( :EXCHANGE ) EX_tma( e ) Trimethylamine exchange [e] : tma <==> ( :EXCHANGE ) EX_tmao( e ) Trimethylamine N-oxide exchange [e] : tmao <==> ( :EXCHANGE ) EX_tre( e ) Trehalose exchange [e] : tre <==> ( :EXCHANGE ) EX_trp-L( e ) L-Tryptophan exchange [e] : trp-L <==> ( :EXCHANGE ) EX_tsul( e ) Thiosulfate exchange [e] : tsul <==> ( :EXCHANGE ) EX_ttdca( e ) tetradecanoate ( n-C14:0 ) exchange [e] : ttdca <==> ( :EXCHANGE ) EX_ttdcea( e ) tetradecenoate ( n-C14:1 ) exchange [e] : ttdcea <==> ( :EXCHANGE ) EX_tungs( e ) tungstate exchange [e] : tungs <==> ( :EXCHANGE ) EX_tym( e ) Tyramine exchange [e] : tym <==> ( :EXCHANGE ) EX_tyr-L( e ) L-Tyrosine exchange [e] : tyr-L <==> ( :EXCHANGE ) EX_tyrp( e ) Phosphotyrosine exchange [e] : tyrp <==> ( :EXCHANGE ) EX_uacgam( e ) UDP-N-acetyl-D-glucosamine exchange [e] : uacgam <==> ( :EXCHANGE ) EX_udpacgal( e ) UDP-N-acetyl-D-galactosamine exchange [e] : udpacgal <==> ( :EXCHANGE ) EX_udpg( e ) UDPglucose exchange [e] : udpg <==> ( :EXCHANGE ) EX_udpgal( e ) UDPgalactose exchange [e] : udpgal <==> ( :EXCHANGE ) EX_udpglcur( e ) UDP-D-glucuronate exchange [e] : udpglcur <==> ( :EXCHANGE ) EX_ump( e ) UMP exchange [e] : ump <==> ( :EXCHANGE ) EX_ura( e ) Uracil exchange [e] : ura <==> ( :EXCHANGE ) EX_urea( e ) Urea exchange [e] : urea <==> ( :EXCHANGE ) EX_uri( e ) Uridine exchange [e] : uri <==> ( :EXCHANGE ) EX_val-L( e ) L-Valine exchange [e] : val-L <==> ( :EXCHANGE ) EX_xan( e ) Xanthine exchange [e] : xan <==> ( :EXCHANGE ) EX_xmp( e ) Xanthosine 5'-phosphate exchange [e] : xmp <==> ( :EXCHANGE ) EX_xtsn( e ) Xanthosine exchange [e] : xtsn <==> ( :EXCHANGE ) EX_xyl-D( e ) D-Xylose exchange [e] : xyl-D <==> ( :EXCHANGE ) EX_xylu-L( e ) L-Xylulose exchange [e] : xylu-L <==> ( :EXCHANGE ) EX_zn2( e ) Zinc exchange [e] : zn2 <==> ( :EXCHANGE ) FALDtpp formaldehyde transport via diffusion ( periplasm ) fald[p] <==> fald[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) FALGTHLs formaldehyde glutathione ligase ( spontaneous ) [c] : fald + gthrd <==> hmgth ( RXN-2961 ) FE3abcpp iron ( III ) transport via ABC system ( periplasm to cytoplasm ) atp[c] + fe3[p] + h2o[c] --> adp[c] + fe3[c] + h[c] + pi[c] FE3DHBZR "release of Fe( III ) from ferric 2,3-dihydroxybenzoylserine" [c] : fe3dhbzs --> 23dhbzs + fe3 FE3HOXexs Fe( III ) hydroxamate Fe-loading reaction ( spontaneaous ) [e] : fe3 + fe3hox-un --> fe3hox ( :UNMAPPED-CPDS ) FE3HOXR1 Fe( III )hydroxamate reductase [c] : fadh2 + ( 2 ) fe3hox --> fad + ( 2 ) fe2 + ( 2 ) fe3hox-un + ( 2 ) h ( :UNMAPPED-CPDS ) FE3HOXR2 Fe( III )hydroxamate reductase [c] : ( 2 ) fe3hox + fmnh2 --> ( 2 ) fe2 + ( 2 ) fe3hox-un + fmn + ( 2 ) h ( :UNMAPPED-CPDS ) FE3HOXR3 Fe( III )hydroxamate reductase [c] : ( 2 ) fe3hox + rbflvrd --> ( 2 ) fe2 + ( 2 ) fe3hox-un + ( 2 ) h + ribflv ( :UNMAPPED-CPDS ) FE3HOXUtex Fe( III )hydroxamate unloaded secretion fe3hox-un[c] + h[p] --> fe3hox-un[p] + h[c] ( :UNMAPPED-CPDS ) FE3HOXUtpp Fe( III )hydroxamate unloaded secretion ( extracellular ) fe3hox-un[p] + h[p] --> fe3hox-un[e] + h[c] ( :UNMAPPED-CPDS ) FECRMexs ferrichrome Fe( III )-loading reaction ( spontaneous ) [e] : fe3 + fecrm-un --> fecrm ( :UNMAPPED-CPDS ) FECRMR1 Ferrichrome reductase [c] : fadh2 + ( 2 ) fecrm --> fad + ( 2 ) fe2 + ( 2 ) fecrm-un + ( 2 ) h ( :UNMAPPED-CPDS ) FECRMR2 Ferrichrome reductase [c] : ( 2 ) fecrm + fmnh2 --> ( 2 ) fe2 + ( 2 ) fecrm-un + fmn + ( 2 ) h ( :UNMAPPED-CPDS ) FECRMR3 Ferrichrome reductase [c] : ( 2 ) fecrm + rbflvrd --> ( 2 ) fe2 + ( 2 ) fecrm-un + ( 2 ) h + ribflv ( :UNMAPPED-CPDS ) FECRMUtex ferrichrome ( minus Fe ) secretion ( to extracellular ) fecrm-un[p] + h[p] --> fecrm-un[e] + h[c] ( :UNMAPPED-CPDS ) FECRMUtpp ferrichrome ( minus Fe ) secretion ( to periplasm ) fecrm-un[c] + h[p] --> fecrm-un[p] + h[c] ( :UNMAPPED-CPDS ) FEENTERexs enterobactin Fe( III ) binding ( spontaneous ) [e] : enter + fe3 --> feenter FEENTERR1 Fe-enterobactin reduction ( Fe( III )-unloading ) [c] : fadh2 + ( 2 ) feenter --> ( 2 ) enter + fad + ( 2 ) fe2 + ( 2 ) h FEENTERR2 Fe-enterobactin reduction ( Fe( III )-unloading ) [c] : ( 2 ) feenter + fmnh2 --> ( 2 ) enter + ( 2 ) fe2 + fmn + ( 2 ) h FEENTERR3 Fe-enterobactin reduction ( Fe( III )-unloading ) [c] : ( 2 ) feenter + rbflvrd --> ( 2 ) enter + ( 2 ) fe2 + ( 2 ) h + ribflv FEENTERtex enterochelin transport ( secretion periplasm ) enter[p] + h[p] --> enter[e] + h[c] FEOXAMexs ferroxamine Fe3-loading reaction ( spontaneous ) [e] : fe3 + feoxam-un --> feoxam ( :UNMAPPED-CPDS ) FEOXAMR1 ferroxamine reductase [c] : fadh2 + ( 2 ) feoxam --> fad + ( 2 ) fe2 + ( 2 ) feoxam-un + ( 2 ) h ( :UNMAPPED-CPDS ) FEOXAMR2 ferroxamine reductase [c] : ( 2 ) feoxam + fmnh2 --> ( 2 ) fe2 + ( 2 ) feoxam-un + fmn + ( 2 ) h ( :UNMAPPED-CPDS ) FEOXAMR3 ferroxamine reductase [c] : ( 2 ) feoxam + rbflvrd --> ( 2 ) fe2 + ( 2 ) feoxam-un + ( 2 ) h + ribflv ( :UNMAPPED-CPDS ) FEOXAMUtex ferroxamine ( minus Fe3 ) secretion ( to extracellular ) feoxam-un[p] + h[p] --> feoxam-un[e] + h[c] ( :UNMAPPED-CPDS ) FEOXAMUtpp ferroxamine ( minus Fe3 ) secretion ( to periplasm ) feoxam-un[c] + h[p] --> feoxam-un[p] + h[c] ( :UNMAPPED-CPDS ) FFSD beta-fructofuranosidase [c] : h2o + suc6p --> fru + g6p ( 3.2.1.26-RXN ) ( :METACYC ) G5SADr "L-glutamate 5-semialdehyde dehydratase, reversible" [c] : glu5sa <==> 1pyr5c + h + h2o ( SPONTPRO-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLYOX3 glyoxalase III [c] : h2o + mthgxl --> h + lac-D ( GLYOXIII-RXN ) ( ( RIGHT REMOVE PROTON ) ) GTPHs spontaneous GTP amine hydrolysis [c] : gtp + h + h2o --> nh4 + xtp GUAtpp Guanine transport via diffusion ( periplasm ) gua[p] <==> gua[c] GUR1PPpp Glucuronate 1-phosphate phosphatase ( periplasm ) [p] : glcur1p + h2o --> glcur + pi H2SO Hydrogen sulfide oxidation [c] : h2s + ( 2 ) o2 --> ( 2 ) h + so4 H2St1pp h2s transport ( periplasm ) h2s[c] --> h2s[p] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) H2tpp hydrogen transport diffusion ( periplasm ) h2[p] <==> h2[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) HEX4 hexokinase ( D-mannose:ATP ) [c] : atp + man --> adp + h + man6p ( MANNKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) HYPOE hypothetical enyme [c] : h2o + pyam5p --> pi + pydam HYXNtpp Hypoxanthine transport ( periplasm ) hxan[p] <==> hxan[c] K2L4Atex KDO( 2 )-lipid IV A transport via vector ( periplasm to extracellular ) kdo2lipid4[p] --> kdo2lipid4[e] LCARR "lacaldehyde reductase ( R-propane-1,2-diol forming )" [c] : h + lald-D + nadh <==> 12ppd-R + nad ( :UNMAPPED-CPDS ) LIPAtex lipid A transport via vector ( periplasm to extracellular ) lipa[p] --> lipa[e] ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) MDRPD 5-Methylthio-5-deoxy-D-ribulose 1-phosphate dehydratase [c] : 5mdru1p --> dkmpp + h2o ( R145-RXN ) ( :METACYC ) METOX1s methionine spontaneous oxidation [c] : h2o2 + met-L --> h2o + metsox-S-L METOX2s methionine spontaneous oxidation 2 [c] : h2o2 + met-L --> h2o + metsox-R-L ( :UNMAPPED-CPDS ) METSOX1abcpp L-methionine S-oxide transport via ABC system ( periplasm ) atp[c] + h2o[c] + metsox-S-L[p] --> adp[c] + h[c] + metsox-S-L[c] + pi[c] METSOX2abcpp L-methionine R-oxide transport via ABC system ( periplasm ) atp[c] + h2o[c] + metsox-R-L[p] --> adp[c] + h[c] + metsox-R-L[c] + pi[c] ( :UNMAPPED-CPDS ) MG2t3_2pp magnesium ( Mg+2 ) transport in/out via proton antiport ( periplasm ) ( 2 ) h[c] + mg2[p] <==> ( 2 ) h[p] + mg2[c] ( TRANS-RXN-141 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) MINOHPtexi myo-inositol phosphate transport via diffusion ( extracellular to periplasm ) minohp[e] --> minohp[p] MLDCP1App "murein L,D-carboxypeptidase ( murein5px4p ) ( periplasm )" [p] : h2o + murein5px4p --> alaala + murein3px4p ( :UNMAPPED-CPDS ) MLDCP1Bpp "murein L,D-carboxypeptidase ( murein4p4p ) ( periplasm )" [p] : h2o + murein4p4p --> ala-D + murein4p3p ( :UNMAPPED-CPDS ) MLDCP2App "murein L,D-carboxypeptidase ( murein5p5p ) ( periplasm )" [p] : h2o + murein5p5p --> alaala + murein5p3p ( :UNMAPPED-CPDS ) MLDCP2Bpp "murein L,D-carboxypeptidase ( murein4p3p ) ( periplasm )" [p] : h2o + murein4p3p --> ala-D + murein3p3p ( :UNMAPPED-CPDS ) MLDCP3App "murein L,D-carboxypeptidase ( murein5px3p ) ( periplasm )" [p] : h2o + murein5px3p --> alaala + murein3px3p ( :UNMAPPED-CPDS ) MLDEP1pp "murein L,D-endopeptidase ( murein3px3p ) ( periplasm )" [p] : h2o + murein3px3p --> murein3p3p ( :UNMAPPED-CPDS ) MLDEP2pp "murein L,D-endopeptidase ( murein5px3p ) ( periplasm )" [p] : h2o + murein5px3p --> murein5p3p ( :UNMAPPED-CPDS ) MME methylmalonyl-CoA epimerase [c] : mmcoa-R <==> mmcoa-S ( METHYLMALONYL-COA-EPIM-RXN ) MTRI 5-methylthioribose-1-phosphate isomerase [c] : 5mdr1p <==> 5mdru1p ( 5.3.1.23-RXN ) ( :METACYC ) MTRK 5-methylthioribose kinase [c] : 5mtr + atp --> 5mdr1p + adp + h ( 5-METHYLTHIORIBOSE-KINASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) N2Otpp nitrious oxide transport ( diffusion ) n2o[p] <==> n2o[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) NACtpp Nicotinic acid uptake ( periplasm ) nac[p] --> nac[c] NADN NAD nucleosidase [c] : h2o + nad --> adprib + h + ncam ( NADNUCLEOSID-RXN ) ( ( RIGHT REMOVE PROTON ) ) NADPPPS NADP phosphatase [c] : h2o + nadp --> nad + pi ( NADPPHOSPHAT-RXN ) NMNDA nicotinamide-nucleotide amidase [c] : h2o + nmn --> nh4 + nicrnt ( NMNAMIDOHYDRO-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) NMNN NMN nucleosidase [c] : h2o + nmn --> h + ncam + r5p ( NMNNUCLEOSID-RXN ) ( ( RIGHT REMOVE PROTON ) ) NMNt7pp NMN transport via NMN glycohydrolase ( periplasm ) h2o[c] + nmn[p] --> h[c] + ncam[c] + r5p[c] NOtpp NO transport ( diffusion ) no[p] <==> no[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) O16A4COLIPAtex O16 antigen ( x4 ) core oligosaccharide lipid A transport ( periplasm to extracellular ) o16a4colipa[p] --> o16a4colipa[e] ( :UNMAPPED-CPDS ) O16GLCT2 glucosyltransferase II ( LPS O16 antigen biosynthesis ) [c] : gfgaragund + udpg --> h + o16aund + udp ( :UNMAPPED-CPDS ) O2tpp o2 transport via diffusion ( periplasm ) o2[p] <==> o2[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) OMMBLHX3 "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase ( anaerobic )" [c] : 2ommbl + ( 2 ) atp + ( 3 ) h2o + nad --> 2omhmbl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi OMPHHX3 2-octaprenyl-6-methoxyphenol hydroxylase ( anaerobic ) [c] : 2omph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ombzl + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi OPHHX3 2-Octaprenylphenol hydroxylase ( anaerobic ) [c] : 2oph + ( 2 ) atp + ( 3 ) h2o + nad --> 2ohph + ( 2 ) adp + ( 3 ) h + nadh + ( 2 ) pi OXAMTC oxamate transcarbamoylase [c] : oxur + pi --> cbp + oxam ( OXAMATE-CARBAMOYLTRANSFERASE-RXN ) ( :METACYC ) PACALDt2rpp phenylacetaldehyde reversible transport via proton symport ( periplasm ) h[p] + pacald[p] <==> h[c] + pacald[c] PDX5PO2 pyridoxine 5'-phosphate oxidase ( anaerboic [c] : nad + pdx5p --> h + nadh + pydx5p PDXPP Pyridoxine 5-phosphate phosphatase [c] : h2o + pdx5p --> pi + pydxn PHEMEtiex protoheme transport irreversible out via diffusion ( periplasm to extracellular ) pheme[p] --> pheme[e] PMDPHT pyrimidine phosphatase [c] : 5aprbu + h2o --> 4r5au + pi ( RIBOPHOSPHAT-RXN ) PPALtpp propanal transport via channel ( periplasm ) ppal[c] <==> ppal[p] PYDXPP Pyridoxal 5-phosphate phosphatase [c] : h2o + pydx5p --> pi + pydx ( 3.1.3.74-RXN ) PYRt2rpp pyruvate reversible transport via proton symport ( periplasm ) h[p] + pyr[p] <==> h[c] + pyr[c] R1PK ribose 1-phosphokinase [c] : atp + r1p --> adp + h + r15bp ( RXN0-1402 ) ( ( RIGHT REMOVE PROTON ) ) SO2tpp SO2 transport via diffusion ( periplasm ) so2[p] <==> so2[c] ( :DIFFUSION ) ( :INNER-MEMBRANE-DIFFUSION ) SSALx succinate-semialdehyde dehydrogenase ( NAD ) [c] : h2o + nad + sucsal --> ( 2 ) h + nadh + succ ( SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) SUCCt3pp succinate transport out via proton antiport ( periplasm ) h[p] + succ[c] --> h[c] + succ[p] THYMt3pp thymine transport out via proton antiport ( periplasm ) h[p] + thym[c] --> h[c] + thym[p] UDCPPtppi undecaprenyl phosphate transport ( cytoplasm to periplasm ) udcpp[p] --> udcpp[c] ULA4Ntppi transport ( cytoplasm to periplasm ) uLa4n[c] --> uLa4n[p] ( :UNMAPPED-CPDS ) UNK3 2-keto-4-methylthiobutyrate transamination [c] : 2kmb + glu-L --> akg + met-L UPLA4FNF undecaprenyl phosphate-L-Ara4FN formylase [c] : h2o + uLa4fn --> for + uLa4n ( :UNMAPPED-CPDS ) URIC uricase [c] : ( 2 ) h2o + o2 + urate --> alltn + co2 + h2o2 XANtpp xanthine reversible transport ( periplasm ) xan[p] <==> xan[c] R_BiomassEcoli R_BiomassEcoli ( 0.050000 ) 5mthf[c] + ( 0.000050 ) accoa[c] + ( 0.488000 ) ala-L[c] + ( 0.001000 ) amp[c] + ( 0.281000 ) arg-L[c] + ( 0.229000 ) asn-L[c] + ( 0.229000 ) asp-L[c] + ( 45.731800 ) atp[c] + ( 0.000129 ) clpn-EC[c] + ( 0.000006 ) coa[c] + ( 0.126000 ) ctp[c] + ( 0.087000 ) cys-L[c] + ( 0.024700 ) datp[c] + ( 0.025400 ) dctp[c] + ( 0.025400 ) dgtp[c] + ( 0.024700 ) dttp[c] + ( 0.000010 ) fad[c] + ( 0.250000 ) gln-L[c] + ( 0.250000 ) glu-L[c] + ( 0.582000 ) gly[c] + ( 0.154000 ) glycogen[c] + ( 0.203000 ) gtp[c] + ( 45.560800 ) h2o[c] + ( 0.090000 ) his-L[c] + ( 0.276000 ) ile-L[c] + ( 0.428000 ) leu-L[c] + ( 0.008400 ) lps-EC[c] + ( 0.326000 ) lys-L[c] + ( 0.146000 ) met-L[c] + ( 0.002150 ) nad[c] + ( 0.000050 ) nadh[c] + ( 0.000130 ) nadp[c] + ( 0.000400 ) nadph[c] + ( 0.001935 ) pe-EC[c] + ( 0.027600 ) peptido-EC[c] + ( 0.000464 ) pg-EC[c] + ( 0.176000 ) phe-L[c] + ( 0.210000 ) pro-L[c] + ( 0.000052 ) ps-EC[c] + ( 0.035000 ) ptrc[c] + ( 0.205000 ) ser-L[c] + ( 0.007000 ) spmd[c] + ( 0.000003 ) succoa[c] + ( 0.241000 ) thr-L[c] + ( 0.054000 ) trp-L[c] + ( 0.131000 ) tyr-L[c] + ( 0.003000 ) udpg[c] + ( 0.136000 ) utp[c] + ( 0.402000 ) val-L[c] --> ( 45.560800 ) adp[c] + ( 45.560350 ) h[c] + ( 45.562800 ) pi[c] + ( 0.730200 ) ppi[c]