abbreviation officialName equation geneAssociation ecocyc-rxn-ids analysis notes 12PPDRtex "( R )-Propane-1,2-diol transport via diffusion ( extracellular to periplasm )" 12ppd-R[e] <==> 12ppd-R[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 12ppd-R 0 12PPDStex "( S )-Propane-1,2-diol transport via diffusion ( extracellular to periplasm )" 12ppd-S[e] <==> 12ppd-S[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 12ppd-S 0 14GLUCANabcpp "1,4-alpha-D-glucan transport via ABC system ( periplasm )" 14glucan[p] + atp[c] + h2o[c] --> 14glucan[c] + adp[c] + h[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, 14glucan 4 14GLUCANtexi "1,4-alpha-D-glucan transport via diffusion ( extracellular to periplasm ) irreversible" 14glucan[e] --> 14glucan[p] B4036 ( RXN0-1683 ) RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt 14glucan 0 23CAMPtex 23cAMP transport via diffusion ( extracellular to periplasm ) 23camp[e] <==> 23camp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 23camp 0 23CCMPtex 23cCMP transport via diffusion ( extracellular to periplasm ) 23ccmp[e] <==> 23ccmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 23ccmp 0 23CGMPtex 23cGMP transport via diffusion ( extracellular to periplasm ) 23cgmp[e] <==> 23cgmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 23cgmp 0 23CUMPtex 23cUMP transport via diffusion ( extracellular to periplasm ) 23cump[e] <==> 23cump[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 23cump 0 23DAPPAtex "2,3-diaminopropionate transport via diffusion" 23dappa[e] <==> 23dappa[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 23dappa 0 23PDE2pp "2',3'-cyclic-nucleotide phosphodiesterase ( UMP ) ( periplasm )" [p] : 23cump + h2o --> 3ump + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides h, 23cump, 3ump 1 23PDE4pp "2',3'-cyclic-nucleotide phosphodiesterase ( CMP ) ( periplasm )" [p] : 23ccmp + h2o --> 3cmp + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides h, 3cmp, 23ccmp 1 23PDE7pp "2',3'-cyclic-nucleotide phosphodiesterase ( AMP ) ( periplasm )" [p] : 23camp + h2o --> 3amp + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides 23camp, h, 3amp 1 23PDE9pp "2',3'-cyclic-nucleotide phosphodiesterase ( GMP ) ( periplasm )" [p] : 23cgmp + h2o --> 3gmp + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides 3gmp, 23cgmp, h 1 26DAHtex "meso-2,6-Diaminoheptanedioate transport via diffusion ( extracellular to periplasm )" 26dap-M[e] <==> 26dap-M[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 26dap-M 0 2AGPEAT120 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C12:0 ) [c] : 2agpe120 + atp + ddca --> amp + pe120 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpe120, ddca, pe120 3 2AGPEAT140 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C14:0 ) [c] : 2agpe140 + atp + ttdca --> amp + pe140 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpe140, ttdca, pe140 3 2AGPEAT141 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C14:1 ) [c] : 2agpe141 + atp + ttdcea --> amp + pe141 + ppi B2836 ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpe141, pe141, ttdcea 3 2AGPEAT160 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C16:0 ) [c] : 2agpe160 + atp + hdca --> amp + pe160 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP hdca, pe160, 2agpe160 3 2AGPEAT161 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C16:1 ) [c] : 2agpe161 + atp + hdcea --> amp + pe161 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pe161, hdcea, 2agpe161 3 2AGPEAT180 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C18:0 ) [c] : 2agpe180 + atp + ocdca --> amp + pe180 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pe180, 2agpe180, ocdca 3 2AGPEAT181 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C18:1 ) [c] : 2agpe181 + atp + ocdcea --> amp + pe181 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pe181, 2agpe181, ocdcea 3 2AGPGAT120 2-acyl-glycerophospho-glycerol acyltransferase ( n-C12:0 ) [c] : 2agpg120 + atp + ddca --> amp + pg120 + ppi B2836 ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpg120, ddca, pg120 3 2AGPGAT140 2-acyl-glycerophospho-glycerol acyltransferase ( n-C14:0 ) [c] : 2agpg140 + atp + ttdca --> amp + pg140 + ppi B2836 ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP ttdca, 2agpg140, pg140 3 2AGPGAT141 2-acyl-glycerophospho-glycerol acyltransferase ( n-C14:1 ) [c] : 2agpg141 + atp + ttdcea --> amp + pg141 + ppi B2836 ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpg141, pg141, ttdcea 3 2AGPGAT160 2-acyl-glycerophospho-glycerol acyltransferase ( n-C16:0 ) [c] : 2agpg160 + atp + hdca --> amp + pg160 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP hdca, pg160, 2agpg160 3 2AGPGAT161 2-acyl-glycerophospho-glycerol acyltransferase ( n-C16:1 ) [c] : 2agpg161 + atp + hdcea --> amp + pg161 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pg161, hdcea, 2agpg161 3 2AGPGAT180 2-acyl-glycerophospho-glycerol acyltransferase ( n-C18:0 ) [c] : 2agpg180 + atp + ocdca --> amp + pg180 + ppi B2836 ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pg180, 2agpg180, ocdca 3 2AGPGAT181 2-acyl-glycerophospho-glycerol acyltransferase ( n-C18:1 ) [c] : 2agpg181 + atp + ocdcea --> amp + pg181 + ppi B2836 ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pg181, ocdcea, 2agpg181 3 2DGLCNRx 2-dehydro-D-gluconate reductase ( NADH ) [c] : 2dhglcn + h + nadh --> glcn + nad B3553 1.1.1.215-RXN :gene-match NADP+ + gluconate = 2-dehydro-D-gluconate + NADPH nadph, nadp, 2dhguln h, nadh, nad, 2dhglcn 1 2DGLCNRy 2-dehydro-D-gluconate reductase ( NADPH ) [c] : 2dhglcn + h + nadph --> glcn + nadp B3553 ( 1.1.1.215-RXN ) ( ( LEFT REMOVE PROTON ) ) 1.1.1.215-RXN :gene-match NADP+ + gluconate = 2-dehydro-D-gluconate + NADPH 2dhguln h, 2dhglcn 3 2DGULRx 2-dehydro-L-gulonate reductase ( NADH ) [c] : 2dhguln + h + nadh --> idon-L + nad B3553 YIAE2-RXN :gene-match 2-dehydro-D-gluconate + NADPH = L-idonate + NADP+ nadph, nadp h, nadh, nad 2 2DGULRy 2-dehydro-L-gulonate reductase ( NADPH ) [c] : 2dhguln + h + nadph --> idon-L + nadp B3553 ( YIAE2-RXN ) ( ( LEFT REMOVE PROTON ) ) YIAE2-RXN :gene-match 2-dehydro-D-gluconate + NADPH = L-idonate + NADP+ h 4 2MAHMP 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphatase [c] : 2mahmp + h2o --> 4ampm + h + pi ( B0446 OR B1134 ) RXN0-3542 :gene-match thiamine diphosphate + H2O -> thiamine-phosphate + phosphate thmpp, thmmp 2mahmp, 4ampm, h 2 34dhpactex dihydroxyphenylacetaldehyde transport via diffusion ( extracellular to periplasm ) 34dhpac[e] <==> 34dhpac[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 34dhpac 0 3AMPtex 3AMP transport via diffusion ( extracellular to periplasm ) 3amp[e] <==> 3amp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 3amp 0 3CMPtex 3CMP transport via diffusion ( extracellular to periplasm ) 3cmp[e] <==> 3cmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 3cmp 0 3GMPtex 3GMP transport via diffusion ( extracellular to periplasm ) 3gmp[e] <==> 3gmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 3gmp 0 3HAD100 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C10:0 ) [c] : 3hdecACP --> h2o + tdec2eACP ( B0954 OR B0180 ) ( FABAUNSATDEHYDR-RXN ) FABAUNSATDEHYDR-RXN :gene-match beta-hydroxydecanoyl-ACP = trans-delta2-decenoyl-ACP + H2O 3 3HAD120 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C12:0 ) [c] : 3hddecACP --> h2o + tddec2eACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP tddec2eACP, 3hddecACP 1 3HAD121 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C12:1 ) [c] : 3hcddec5eACP --> h2o + t3c5ddeceACP ( B0180 OR B0954 ) ( RXN0-2144 ) RXN0-2144 :gene-match beta-hydroxy-cis-delta5-dodecenoyl-ACP = H2O + trans-delta3-cis-delta5-dodecenoyl-ACP 3 3HAD140 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C14:0 ) [c] : 3hmrsACP --> h2o + tmrs2eACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN ) ( :EXPANDED-RXN-MATCH ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP tmrs2eACP, 3hmrsACP 1 3HAD141 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C14:1 ) [c] : 3hcmrs7eACP --> h2o + t3c7mrseACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP t3c7mrseACP, 3hcmrs7eACP 1 3HAD160 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C16:0 ) [c] : 3hpalmACP --> h2o + tpalm2eACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3 3HAD161 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C16:1 ) [c] : 3hcpalm9eACP --> h2o + t3c9palmeACP ( B0180 OR B0954 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP t3c9palmeACP, 3hcpalm9eACP 1 3HAD180 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C18:0 ) [c] : 3hoctaACP --> h2o + toctd2eACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP 3hoctaACP, toctd2eACP 1 3HAD181 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C18:1 ) [c] : 3hcvac11eACP --> h2o + t3c11vaceACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP 3hcvac11eACP, t3c11vaceACP 1 3HAD40 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C4:0 ) [c] : 3haACP --> but2eACP + h2o ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP but2eACP, 3haACP 1 3HAD60 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C6:0 ) [c] : 3hhexACP --> h2o + thex2eACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP 3hhexACP, thex2eACP 1 3HAD80 3-hydroxyacyl-[acyl-carrier-protein] dehydratase ( n-C8:0 ) [c] : 3hoctACP --> h2o + toct2eACP ( B0954 OR B0180 ) ( 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN ) 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN :gene-match a D-3-hydroxy-acyl-ACP = a trans-delta2-enoyl-acyl-ACP + H2O 3hpalmACP, tpalm2eACP toct2eACP, 3hoctACP 1 3HCINNMH 3-hydroxycinnamate hydroxylase [c] : 3hcinnm + h + nadh + o2 --> dhcinnm + h2o + nad B0347 ( :UNMAPPED-CPDS ) MHPHYDROXY-RXN :gene-match 3-(3-hydroxyphenyl)propionate + NADH + O2 = H2O + 3-(2,3-dihydroxyphenyl)propionate + NAD+ 3hpppn, dhpppn 3hcinnm, dhcinnm, h 4 3HPPPNH 3-( 3-hydroxy-phenyl )propionate hydroxylase [c] : 3hpppn + h + nadh + o2 --> dhpppn + h2o + nad B0347 ( MHPHYDROXY-RXN ) ( ( LEFT REMOVE PROTON ) ) MHPHYDROXY-RXN :gene-match 3-(3-hydroxyphenyl)propionate + NADH + O2 = H2O + 3-(2,3-dihydroxyphenyl)propionate + NAD+ h 6 3KGK 3-keto-L-gulonate kinase [c] : 3dhguln + atp --> 3dhgulnp + adp + h B3580 ( RXN0-704 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-704 :gene-match 3-keto-L-gulonate + ATP = 3-keto-L-gulonate 6-phosphate + ADP h 4 3NTD2pp 3'-nucleotidase ( UMP ) ( periplasm ) [p] : 3ump + h2o --> pi + uri B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides uri, 3ump 2 3NTD4pp 3'-nucleotidase ( CMP ) ( periplasm ) [p] : 3cmp + h2o --> cytd + pi B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides cytd, 3cmp 2 3NTD7pp 3'-nucleotidase ( AMP ) ( periplasm ) [p] : 3amp + h2o --> adn + pi B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides adn, 3amp 2 3NTD9pp 3'-nucleotidase ( GMP ) ( periplasm ) [p] : 3gmp + h2o --> gsn + pi B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides 3gmp, gsn 2 3OAR100 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C10:0 ) [c] : 3odecACP + h + nadph <==> 3hdecACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3odecACP, 3hdecACP 2 3OAR120 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C12:0 ) [c] : 3oddecACP + h + nadph <==> 3hddecACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3hddecACP, 3oddecACP 2 3OAR121 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C12:1 ) [c] : 3ocddec5eACP + h + nadph --> 3hcddec5eACP + nadp B1093 ( RXN0-2142 ) ( ( LEFT REMOVE PROTON ) ) RXN0-2142 :gene-match beta-keto-cis-delta5-dodecenoyl-ACP + NADPH = beta-hydroxy-cis-delta5-dodecenoyl-ACP + NADP+ h 4 3OAR140 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C14:0 ) [c] : 3omrsACP + h + nadph <==> 3hmrsACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3omrsACP, 3hmrsACP 2 3OAR141 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C14:1 ) [c] : 3ocmrs7eACP + h + nadph --> 3hcmrs7eACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3ocmrs7eACP, 3hcmrs7eACP 2 3OAR160 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C16:0 ) [c] : 3opalmACP + h + nadph <==> 3hpalmACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP h 4 3OAR161 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C16:1 ) [c] : 3ocpalm9eACP + h + nadph --> 3hcpalm9eACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3hcpalm9eACP, 3ocpalm9eACP 2 3OAR180 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C18:0 ) [c] : 3ooctdACP + h + nadph <==> 3hoctaACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3hoctaACP, 3ooctdACP 2 3OAR181 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C18:1 ) [c] : 3ocvac11eACP + h + nadph --> 3hcvac11eACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3hcvac11eACP, 3ocvac11eACP 2 3OAR40 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C4:0 ) [c] : actACP + h + nadph <==> 3haACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, actACP, 3haACP 2 3OAR60 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C6:0 ) [c] : 3ohexACP + h + nadph <==> 3hhexACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP h, 3hhexACP, 3ohexACP 2 3OAR80 3-oxoacyl-[acyl-carrier-protein] reductase ( n-C8:0 ) [c] : 3ooctACP + h + nadph <==> 3hoctACP + nadp B1093 ( 3-OXOACYL-ACP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-REDUCT-RXN :gene-match a D-3-hydroxy-acyl-ACP + NADP+ = NADPH + a beta-ketoacyl-ACP 3hpalmACP, 3opalmACP 3ooctACP, h, 3hoctACP 2 3OAS100 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C10:0 ) [c] : h + malACP + ocACP --> 3odecACP + ACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, ocACP, 3odecACP 3 3OAS120 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C12:0 ) [c] : dcaACP + h + malACP --> 3oddecACP + ACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, dcaACP, 3oddecACP 3 3OAS121 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C12:1 ) [c] : cdec3eACP + h + malACP --> 3ocddec5eACP + ACP + co2 B2323 ( RXN0-2141 ) ( ( LEFT REMOVE PROTON ) ) RXN0-2141 :gene-match cis-delta3-decenoyl-ACP + malonyl-ACP = beta-keto-cis-delta5-dodecenoyl-ACP + acyl carrier protein + CO2 h 5 3OAS140 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C14:0 ) [c] : ddcaACP + h + malACP --> 3omrsACP + ACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, 3omrsACP, ddcaACP 3 3OAS141 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C14:1 ) [c] : cddec5eACP + h + malACP --> 3ocmrs7eACP + ACP + co2 B2323 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP cddec5eACP, 3ocmrs7eACP, h 3 3OAS160 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C16:0 ) [c] : h + malACP + myrsACP --> 3opalmACP + ACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP h, myrsACP 4 3OAS161 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C16:1 ) [c] : h + malACP + tdeACP --> 3ocpalm9eACP + ACP + co2 B2323 ( 3-OXOACYL-ACP-SYNTH-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 3opalmACP h, 3ocpalm9eACP 4 3OAS180 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C18:0 ) [c] : h + malACP + palmACP --> 3ooctdACP + ACP + co2 ( B1095 OR B2323 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, 3ooctdACP, palmACP 3 3OAS181 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C18:1 ) [c] : h + hdeACP + malACP --> 3ocvac11eACP + ACP + co2 B1095 ( 3-OXOACYL-ACP-SYNTH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, 3ocvac11eACP, hdeACP 3 3OAS60 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C6:0 ) [c] : butACP + h + malACP --> 3ohexACP + ACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, butACP, 3ohexACP 3 3OAS80 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C8:0 ) [c] : h + hexACP + malACP --> 3ooctACP + ACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP 3ooctACP, h, hexACP 3 3PEPTabcpp tripeptide ( LalaDgluMdap ) transport via ABC system ( periplasm ) LalaDgluMdap[p] + atp[c] + h2o[c] --> LalaDgluMdap[c] + adp[c] + h[c] + pi[c] ( B1329 AND B1244 AND B1245 AND B1246 AND B1247 ) ABC-22-RXN :gene-match ATP + a peptide[periplasmic space] + H2O =ADP + phosphate + a peptide[cytosol] Peptides h, LalaDgluMdap 4 3PEPTtex LalaDgluMdap ( tripeptide ) transport via diffusion ( extracellular to periplasm ) LalaDgluMdap[e] <==> LalaDgluMdap[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da LalaDgluMdap 0 3UMPtex 3UMP transport via diffusion ( extracellular to periplasm ) 3ump[e] <==> 3ump[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 3ump 0 42A12BOOXpp "4-( 2-Aminoethyl )-1,2-benzenediol:oxygen oxidoreductase( deaminating )( flavin-containing )" [p] : dopa + h2o + o2 --> 34dhpac + h2o2 + nh4 B1386 AMINEOXID-RXN :gene-match an aliphatic amine + H2O + O2 = an aldehyde + ammonia + H2O2 an aldehyde, AMMONIA, Aliphatic-Amines nh4, 34dhpac, dopa 3 4HOXPACDtex 4-hydroxyphenylacetaldehyde transport via diffusion ( extracellular to periplasm ) 4hoxpacd[e] <==> 4hoxpacd[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 4hoxpacd 0 4HTHRS 4-Hydroxy-L-threonine synthase [c] : h2o + phthr --> 4hthr + pi B0004 ( :UNMAPPED-CPDS ) THRESYN-RXN :gene-match O-phospho-L-homoserine + H2O = phosphate + L-threonine phom, thr-L phthr, 4hthr 2 4PCP "tetrapeptide L,D-carboxypeptidase" [c] : LalaDgluMdapDala + h2o --> LalaDgluMdap + ala-D B1192 ( :UNMAPPED-CPDS ) RXN0-2061 :gene-match UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanine + H2O -> L-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate ala-L, um4p, ugmd ala-D, LalaDgluMdapDala, LalaDgluMdap 1 4PEPTabcpp tetrapeptide ( LalaDgluMdapDala ) transport via ABC system ( periplasm ) LalaDgluMdapDala[p] + atp[c] + h2o[c] --> LalaDgluMdapDala[c] + adp[c] + h[c] + pi[c] ( B1243 AND B1244 AND B1245 AND B1246 AND B1247 ) ( :UNMAPPED-CPDS ) ABC-22-RXN :gene-match ATP + a peptide[periplasmic space] + H2O =ADP + phosphate + a peptide[cytosol] Peptides h, LalaDgluMdapDala 4 4PEPTtex LalaDgluMdapDala ( pentapeptide ) transport via diffusion ( extracellular to periplasm ) LalaDgluMdapDala[e] <==> LalaDgluMdapDala[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da LalaDgluMdapDala 0 5DGLCNR 5-dehydro-D-gluconate reductase [c] : 5dglcn + h + nadph <==> glcn + nadp B4266 ( GLUCONATE-5-DEHYDROGENASE-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) GLUCONATE-5-DEHYDROGENASE-RXN :gene-match NAD(P)+ + gluconate = NAD(P)H + 5-ketogluconate NAD(P), NAD(P)H nadph, h, nadp 2 5DGLCNt2rpp "5-Dehydro-D-gluconate transport via proton symport, reversible ( periplasm )" 5dglcn[p] + h[p] <==> 5dglcn[c] + h[c] B4265 TRANS-RXN-181 :gene-match H+[periplasmic space] + L-idonate[periplasmic space] =L-idonate[cytosol] + H+[cytosol] idon-L 5dglcn 1 5DGLCNtex 5-Dehydro-D-gluconate transport via diffusion ( extracellular to periplasm ) 5dglcn[e] <==> 5dglcn[p] ( B0241 OR B1377 OR B0929 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 5dglcn 0 5DOAN 5'-deoxyadenosine nuclosidase [c] : dad-5 + h2o --> 5drib + ade B0159 ( :UNMAPPED-CPDS ) ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN :gene-match S-adenosyl-L-homocysteine + H2O -> S-ribosyl-L-homocysteine + adenine rhcys, ahcys dad-5, 5drib 2 A5PISO arabinose-5-phosphate isomerase [c] : ru5p-D <==> ara5p ( B2708 OR B3197 ) ( DARAB5PISOM-RXN ) DARAB5PISOM-RXN :gene-match D-arabinose 5-phosphate = D-ribulose-5-phosphate 2 AACPS1 acyl-[acyl-carrier-protein] synthetase ( n-C14:0 ) [c] : ACP + atp + ttdca --> amp + myrsACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP ttdca, myrsACP 4 AACPS2 acyl-[acyl-carrier-protein] synthetase ( n-C14:1 ) [c] : ACP + atp + ttdcea --> amp + ppi + tdeACP ( B2836 AND B1094 ) ( :UNMAPPED-CPDS ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid ttdcea 5 AACPS3 acyl-[acyl-carrier-protein] synthetase ( n-C16:0 ) [c] : ACP + atp + hdca --> amp + palmACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP hdca, palmACP 4 AACPS4 acyl-[acyl-carrier-protein] synthetase ( n-C16:1 ) [c] : ACP + atp + hdcea --> amp + hdeACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP hdeACP, hdcea 4 AACPS5 acyl-[acyl-carrier-protein] synthetase ( n-C18:1 ) [c] : ACP + atp + ocdcea --> amp + octeACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP octeACP, ocdcea 4 AACPS6 acyl-[acyl-carrier-protein] synthetase ( n-C18:0 ) [c] : ACP + atp + ocdca --> amp + ocdcaACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP ocdcaACP, ocdca 4 AACPS7 acyl-[acyl-carrier-protein] synthetase ( n-C12:0 ) [c] : ACP + atp + ddca --> amp + ddcaACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP ddca, ddcaACP 4 AACPS8 acyl-[acyl-carrier-protein] synthetase ( n-C10:0 ) [c] : ACP + atp + dca --> amp + dcaACP + ppi ( B2836 AND B1094 ) ( ACYLACPSYNTH-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP a fatty acid, tdeACP dcaACP, dca 4 AACPS9 acyl-[acyl-carrier-protein] synthetase ( n-C8:0 ) [c] : ACP + atp + octa --> amp + ocACP + ppi ( B2836 AND B1094 ) ( RXN-5741 ) RXN-5741 :gene-match octanoate + acyl carrier protein + ATP = octanoyl-ACP + AMP + diphosphate 6 AADDGT "dTDP-N-4-acetamido-4,6-dideoxy-D-galactose transferase" [c] : dtdp4aaddg + unagamu --> dtdp + h + unagamuf B4481 ( FUC4NACTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) FUC4NACTRANS-RXN :gene-match undecaprenyl N-acetyl-glucosaminyl-N-acetyl-mannosaminuronate pyrophosphate + dTDP-4-acetamido-4,6-dideoxy-D-galactose = undecaprenyl N-acetyl-glucosaminyl-N-acetyl-mannosaminuronate-4-acetamido-4,6-dideoxy-D-galactose pyrophosphate + dTDP h 4 AAMYL alpha-amylase [c] : 14glucan --> malthx B1927 ALPHA-AMYL-RXN :gene-match a 1,4-alpha-D-glucan = maltodextrin CPD-1790 malthx 1 AAMYLpp alpha-amylase ( periplasm ) [p] : 14glucan --> malthx B3571 ALPHA-AMYL-RXN :gene-match a 1,4-alpha-D-glucan = maltodextrin CPD-1790 malthx 1 AB6PGH Arbutin 6-phosphate glucohydrolase [c] : arbt6p + h2o --> g6p + hqn B2901 6-PHOSPHO-BETA-GLUCOSIDASE-RXN :gene-match 6-phospho-beta-D-glucosyl-(1,4)-D-glucose + H2O -> beta-D-glucose-6-phosphate + beta-D-glucose GLC, CPD-507 hqn, arbt6p 2 ABTA 4-aminobutyrate transaminase [c] : 4abut + akg --> glu-L + sucsal ( B2662 OR B1302 ) ( GABATRANSAM-RXN ) GABATRANSAM-RXN :gene-match alpha-ketoglutarate + 4-aminobutyrate = L-glutamate + succinate semialdehyde 4 ABUTD Aminobutyraldehyde dehydrogenase [c] : 4abutn + h2o + nad --> 4abut + ( 2 ) h + nadh B1444 ( AMINOBUTDEHYDROG-RXN ) AMINOBUTDEHYDROG-RXN :gene-match 4-amino-butyraldehyde + NAD+ + H2O = 4-aminobutyrate + NADH h 5 ABUTt2pp 4-aminobutyrate transport in via proton symport ( periplasm ) 4abut[p] + h[p] --> 4abut[c] + h[c] B2663 ( TRANS-RXN-57 ) TRANS-RXN-57 :gene-match H+[periplasmic space] + 4-aminobutyrate[periplasmic space] =H+[cytosol] + 4-aminobutyrate[cytosol] 2 ABUTtex 4-aminobutyrate transport via diffusion ( extracellular to periplasm ) 4abut[e] <==> 4abut[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 4abut 0 ACACCT acetyl-CoA:acetoacetyl-CoA transferase [c] : acac + accoa --> aacoa + ac ( B2221 AND B2222 ) ( ACETOACETYL-COA-TRANSFER-RXN ) ACETOACETYL-COA-TRANSFER-RXN :gene-match acetoacetate + acetyl-CoA = acetoacetyl-CoA + acetate 4 ACACT1r acetyl-CoA C-acetyltransferase [c] : ( 2 ) accoa <==> aacoa + coa B2224 ( ACETYL-COA-ACETYLTRANSFER-RXN ) ACETYL-COA-ACETYLTRANSFER-RXN :gene-match 2 acetyl-CoA = acetoacetyl-CoA + coenzyme A 3 ACACtex acetoacetate transport via diffusion ( extracellular to periplasm ) acac[e] <==> acac[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acac 0 ACALD acetaldehyde dehydrogenase ( acetylating ) [c] : acald + coa + nad <==> accoa + h + nadh ( B0351 OR B1241 ) ( ACETALD-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) ACETALD-DEHYDROG-RXN :gene-match NAD+ + coenzyme A + acetaldehyde = NADH + acetyl-CoA h 5 ACALDtex acetaldehyde transport via diffusion ( extracellular to periplasm ) acald[e] <==> acald[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acald 0 ACANTHAT acetyl-CoA:anthranilate acetyltransferase [c] : accoa + anth --> acanth + coa B1463 2.3.1.118-RXN :gene-match an N-hydroxy-arylamine + acetyl-CoA = an N-acetoxyarylamine + coenzyme A N-Acetoxy-Arylamines, N-Hydroxy-Arylamines anth, acanth 2 ACBIPGT Adenosyl cobinamide phosphate guanyltransferase [c] : adocbip + gtp + h --> agdpcbi + ppi B1993 ( COBINPGUANYLYLTRANS-RXN ) ( ( LEFT REMOVE PROTON ) ) COBINPGUANYLYLTRANS-RXN :gene-match adenosylcobinamide-P + GTP = adenosylcobinamide-GDP + diphosphate h 4 ACCOAC acetyl-CoA carboxylase [c] : accoa + atp + hco3 --> adp + h + malcoa + pi ( B0185 AND B2316 AND B3255 AND B3256 ) ACETYL-COA-CARBOXYLTRANSFER-RXN :gene-match ATP + acetyl-CoA + HCO3- + H+ = malonyl-CoA + phosphate + ADP 7 ACGAL1Ptex N-acetyl-D-galactosamine 1-phosphate transport via diffusion ( extracellular to periplasm ) acgal1p[e] <==> acgal1p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acgal1p 0 ACGALtex N-acetyl-D-galactosamine transport via diffusion ( extracellular to periplasm ) acgal[e] <==> acgal[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acgal 0 ACGAM1Ptex N-acetyl-D-glucosamine 1-phosphate transport via diffusion ( extracellular to periplasm ) acgam1p[e] <==> acgam1p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acgam1p 0 ACGAMK N-acetylglucosamine kinase [c] : acgam + atp --> acgam6p + adp + h B1119 ( N-ACETYLGLUCOSAMINE-KINASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) N-ACETYLGLUCOSAMINE-KINASE-RXN :gene-match N-acetyl-D-glucosamine + ATP = N-acetyl-D-glucosamine-6-phosphate + ADP h 4 ACGAMT UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase [c] : uacgam + udcpp --> ump + unaga B3784 ( GLCNACPTRANS-RXN ) GLCNACPTRANS-RXN :gene-match UDP-N-acetyl-D-glucosamine + undecaprenyl phosphate = UMP + undecaprenyl-N-acetyl-alpha-D-glucosaminyl-pyrophosphate 4 ACGAptspp N-Acetyl-D-glucosamine transport via PEP:Pyr PTS ( periplasm ) acgam[p] + pep[c] --> acgam6p[c] + pyr[c] ( ( B2417 AND B1101 AND B2415 AND B2416 ) OR ( B0679 AND B2415 AND B2416 ) ) ( TRANS-RXN-167 ) TRANS-RXN-167 :gene-match phosphoenolpyruvate + N-acetyl-D-glucosamine[periplasmic space] =N-acetyl-D-glucosamine-6-phosphate[cytosol] + pyruvate 4 ACGAtex N-Acetyl-D-glucosamine transport via diffusion ( extracellular to periplasm ) acgam[e] <==> acgam[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acgam 0 ACGK acetylglutamate kinase [c] : acglu + atp --> acg5p + adp B3959 ( ACETYLGLUTKIN-RXN ) ACETYLGLUTKIN-RXN :gene-match N-acetyl-L-glutamate + ATP = N-acetylglutamyl-phosphate + ADP 4 ACGS N-acetylglutamate synthase [c] : accoa + glu-L --> acglu + coa + h B2818 ( N-ACETYLTRANSFER-RXN ) ( ( RIGHT REMOVE PROTON ) ) N-ACETYLTRANSFER-RXN :gene-match L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + coenzyme A h 4 ACHBS 2-aceto-2-hydroxybutanoate synthase [c] : 2obut + h + pyr --> 2ahbut + co2 ( ( B3670 AND B3671 ) OR ( B0077 AND B0078 ) ) ( ACETOOHBUTSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) ACETOOHBUTSYN-RXN :gene-match pyruvate + 2-oxobutanoate = 2-aceto-2-hydroxy-butyrate + CO2 h 4 ACKr acetate kinase [c] : ac + atp <==> actp + adp ( B3115 OR B2296 OR B1849 ) ( ACETATEKIN-RXN ) ACETATEKIN-RXN :gene-match acetate + ATP = acetylphosphate + ADP 4 ACLS acetolactate synthase [c] : h + ( 2 ) pyr --> alac-S + co2 ( ( B3670 AND B3671 ) OR ( B0077 AND B0078 ) ) ( ACETOLACTSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) ACETOLACTSYN-RXN :gene-match 2 pyruvate = 2-acetolactate + CO2 h 3 ACMAMUT UDP-N-acetyl-D-mannosaminuronic acid transferase [c] : uacmamu + unaga --> h + udp + unagamu B3794 ( UDPMANACATRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) UDPMANACATRANS-RXN :gene-match UDP-N-acetyl-beta-D-mannosaminouronate + undecaprenyl-N-acetyl-alpha-D-glucosaminyl-pyrophosphate = undecaprenyl N-acetyl-glucosaminyl-N-acetyl-mannosaminuronate pyrophosphate + UDP h 4 ACMANAptspp N-acetyl-D-mannosamine transport via PTS ( periplasm ) acmana[p] + pep[c] --> acmanap[c] + pyr[c] ( B1817 AND B1818 AND B1819 AND B2415 AND B2416 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate sbt6p, sbt-D acmanap, acmana 2 ACMANAtex N-acetyl-D-mannosamine transport via diffusion ( extracellular to periplasm ) acmana[e] <==> acmana[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acmana 0 ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS ( periplasm ) acmum[p] + pep[c] --> acmum6p[c] + pyr[c] ( B2417 AND B2429 AND B2415 AND B2416 ) RXN0-17 :gene-match N-acetylmuramate[periplasmic space] + phosphoenolpyruvate =MurNAc-6-P[cytoplasm] + pyruvate 4 ACMUMtex N-acetylmuramate transport via diffusion ( extracellular to periplasm ) acmum[e] --> acmum[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acmum 0 ACNAMt2pp N-acetylneuraminate proton symport ( periplasm ) acnam[p] + h[p] --> acnam[c] + h[c] B3224 ( TRANS-RXN-25 ) TRANS-RXN-25 :gene-match H+[periplasmic space] + N-acetylneuraminate[periplasmic space] =H+[cytosol] + N-acetylneuraminate[cytosol] 2 ACNAMtex N-acetylneuraminate transport via diffusion ( extracellular to periplasm ) acnam[e] <==> acnam[p] ( B4311 OR B0929 OR B2215 ) RXN0-0 :gene-match N-acetylneuraminate[extracellular space] =N-acetylneuraminate[periplasmic space] 1 ACNML N-Acetylneuraminate lyase [c] : acnam --> acmana + pyr B3225 ( ACNEULY-RXN ) ACNEULY-RXN :gene-match N-acetylneuraminate = N-acetylmannosamine + pyruvate 3 ACOAD1f acyl-CoA dehydrogenase ( butanoyl-CoA ) [c] : btcoa + fad --> b2coa + fadh2 B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa b2coa, btcoa 2 ACOAD2f acyl-CoA dehydrogenase ( hexanoyl-CoA ) [c] : fad + hxcoa --> fadh2 + hx2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa hxcoa, hx2coa 2 ACOAD3f acyl-CoA dehydrogenase ( octanoyl-CoA ) [c] : fad + occoa --> fadh2 + oc2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa occoa, oc2coa 2 ACOAD4f acyl-CoA dehydrogenase ( decanoyl-CoA ) [c] : dcacoa + fad --> dc2coa + fadh2 B0221 ( ACYLCOADEHYDROG-RXN ) ( :EXPANDED-RXN-MATCH ) ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa dc2coa, dcacoa 2 ACOAD5f acyl-CoA dehydrogenase ( dodecanoyl-CoA ) [c] : ddcacoa + fad --> dd2coa + fadh2 B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa ddcacoa, dd2coa 2 ACOAD6f acyl-CoA dehydrogenase ( tetradecanoyl-CoA ) [c] : fad + tdcoa --> fadh2 + td2coa B0221 ( ACYLCOADEHYDROG-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa tdcoa, td2coa 2 ACOAD7f acyl-CoA dehydrogenase ( hexadecanoyl-CoA ) [c] : fad + pmtcoa --> fadh2 + hdd2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa pmtcoa, hdd2coa 2 ACOAD8f acyl-CoA dehydrogenase ( octadecanoyl-CoA ) [c] : fad + stcoa --> fadh2 + od2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa od2coa, stcoa 2 ACOATA Acetyl-CoA ACP transacylase [c] : ACP + accoa <==> acACP + coa ( B1094 AND B1091 ) ( ACP-S-ACETYLTRANSFER-RXN ) ACP-S-ACETYLTRANSFER-RXN :gene-match acyl carrier protein + acetyl-CoA = acetyl-ACP + coenzyme A 4 ACODA acetylornithine deacetylase [c] : acorn + h2o --> ac + orn B3957 ( ACETYLORNDEACET-RXN ) ACETYLORNDEACET-RXN :gene-match N-acetyl-L-ornithine + H2O = L-ornithine + acetate 4 ACONMT Trans-aconitate methyltransferase [c] : acon-T + amet --> aconm + ahcys B1519 ( RXN0-2441 ) RXN0-2441 :gene-match trans-aconitate + S-adenosyl-L-methionine -> (E)-3-(methoxycarbonyl)pent-2-enedioate + S-adenosyl-L-homocysteine 4 ACONTa "aconitase ( half-reaction A, Citrate hydro-lyase )" [c] : cit <==> acon-C + h2o ( B1276 OR B0118 ) ( ACONITATEDEHYDR-RXN ) ACONITATEDEHYDR-RXN :gene-match citrate = cis-aconitate + H2O 3 ACONTb "aconitase ( half-reaction B, Isocitrate hydro-lyase )" [c] : acon-C + h2o <==> icit ( B0118 OR B1276 ) ( ACONITATEHYDR-RXN ) ACONITATEHYDR-RXN :gene-match cis-aconitate + H2O = isocitrate 3 ACOTA acetylornithine transaminase [c] : acorn + akg <==> acg5sa + glu-L ( B3359 OR B1748 ) ( ACETYLORNTRANSAM-RXN ) ACETYLORNTRANSAM-RXN :gene-match N-acetyl-L-ornithine + alpha-ketoglutarate = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate 4 ACPS1 acyl-carrier protein synthase [c] : apoACP + coa --> ACP + h + pap ( B2563 OR B3475 ) ( HOLO-ACP-SYNTH-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) HOLO-ACP-SYNTH-RXN :gene-match apo-[acyl-carrier protein] + coenzyme A = adenosine-3',5'-bisphosphate + acyl carrier protein apo-ACP apoACP, h 3 ACS acetyl-CoA synthetase [c] : ac + atp + coa --> accoa + amp + ppi B4069 ( ACETATE--COA-LIGASE-RXN ) ACETATE--COA-LIGASE-RXN :gene-match coenzyme A + acetate + ATP = acetyl-CoA + diphosphate + AMP 6 ACSERtex O-Acetyl-L-serine transport via diffusion ( extracellular to periplasm ) acser[e] <==> acser[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da acser 0 ACSERtpp O-Acetyl-L-serine export via facilitated transport acser[c] --> acser[p] ( B2578 OR B1533 ) ( RXN0-1923 ) RXN0-1923 :gene-match O-acetyl-L-serine[cytosol] =O-acetyl-L-serine[periplasmic space] 1 ACt4pp Na+/Acetate symport ( periplasm ) ac[p] + na1[p] --> ac[c] + na1[c] B4067 RXN0-1981 :gene-match acetate[periplasmic space] =acetate[cytosol] na1 1 ACtex Acetate transport via diffusion ( extracellular to periplasm ) ac[e] <==> ac[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ac 0 ADA Adenosine deaminase [c] : adn + h + h2o --> ins + nh4 B1623 ( ADENODEAMIN-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ADENODEAMIN-RXN :gene-match H2O + adenosine = ammonia + inosine AMMONIA h, nh4 3 ADCL 4-aminobenzoate synthase [c] : 4adcho --> 4abz + h + pyr B1096 ( ADCLY-RXN ) ( ( RIGHT REMOVE PROTON ) ) ADCLY-RXN :gene-match 4-amino-4-deoxychorismate = p-aminobenzoate + pyruvate h 3 ADCS 4-amino-4-deoxychorismate synthase [c] : chor + gln-L --> 4adcho + glu-L ( B3360 AND B1812 ) ( PABASYN-RXN ) PABASYN-RXN :gene-match L-glutamine + chorismate = 4-amino-4-deoxychorismate + L-glutamate 4 ADD adenine deaminase [c] : ade + h + h2o --> hxan + nh4 B3665 ( ADENINE-DEAMINASE-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ADENINE-DEAMINASE-RXN :gene-match H2O + adenine -> ammonia + hypoxanthine AMMONIA h, nh4 3 ADEt2rpp adenine transport via proton symport ( reversible ) ( periplasm ) ade[p] + h[p] <==> ade[c] + h[c] B3654 RXN-5076 :gene-match xanthine[periplasmic space] + H+[periplasmic space] =xanthine[cytosol] + H+[cytosol] xan ade 1 ADEtex adenine transport via diffusion ( extracellular to periplasm ) ade[e] <==> ade[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ade 0 ADK1 adenylate kinase [c] : amp + atp <==> ( 2 ) adp B0474 ( ADENYL-KIN-RXN ) ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP 3 ADK3 adentylate kinase ( GTP ) [c] : amp + gtp <==> adp + gdp B0474 ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP atp gtp, gdp 2 ADK4 adentylate kinase ( ITP ) [c] : amp + itp <==> adp + idp B0474 ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP atp itp, idp 2 ADMDC adenosylmethionine decarboxylase [c] : amet + h --> ametam + co2 B0120 ( SAMDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) SAMDECARB-RXN :gene-match S-adenosyl-L-methionine = CO2 + S-adenosyl-L-methioninamine h 3 ADNCYC adenylate cyclase [c] : atp --> camp + ppi B3806 ( ADENYLATECYC-RXN ) ADENYLATECYC-RXN :gene-match ATP = cyclic-AMP + diphosphate 3 ADNK1 adenosine kinase [c] : adn + atp --> adp + amp + h B0474 ( ADENOSINE-KINASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP adn, h 3 ADNt2pp adenosine transport in via proton symport ( periplasm ) adn[p] + h[p] --> adn[c] + h[c] ( B2964 OR B2393 ) ( TRANS-RXN-108A ) TRANS-RXN-108A :gene-match H+[periplasmic space] + adenosine[periplasmic space] =H+[cytosol] + adenosine[cytosol] 2 ADNt2rpp "adenosine transport in via proton symport, reversible ( periplasm )" adn[p] + h[p] <==> adn[c] + h[c] B2406 ( TRANS-RXN-108A ) TRANS-RXN-31 :gene-match H+[periplasmic space] + xanthosine[periplasmic space] =H+[cytosol] + xanthosine[cytosol] xtsn adn 1 ADNUC adenosine hydrolase [c] : adn + h2o --> ade + rib-D B0030 ( ADENOSINE-NUCLEOSIDASE-RXN ) ADENOSINE-NUCLEOSIDASE-RXN :gene-match adenosine + H2O -> adenine + D-ribose 4 ADOCBIK Adenosyl cobinamide kinase [c] : adocbi + atp --> adocbip + adp + h B1993 ( COBINAMIDEKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) COBINAMIDEKIN-RXN :gene-match adenosylcobinamide + ATP = adenosylcobinamide-P + ADP h 4 ADOCBLabcpp Adenosylcobalamin transport via ABC system ( periplasm ) adocbl[p] + atp[c] + h2o[c] --> adocbl[c] + adp[c] + h[c] + pi[c] ( B1711 AND B1709 AND B0158 ) ABC-5-RXN :gene-match ATP + cob(I)alamin[periplasmic space] + H2O =ADP + phosphate + cob(I)alamin[cytosol] cbl1 h, adocbl 4 ADOCBLS Adenosylcobalamin 5'-phosphate synthase [c] : agdpcbi + rdmbzi --> adocbl + gmp + h B1992 ( COBALAMINSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) COBALAMINSYN-RXN :gene-match adenosylcobinamide-GDP + alpha-ribazole = coenzyme B12 + GMP h 4 ADOCBLtonex Adenosylcobalimin transport via ton system ( extermal ) adocbl[e] + h[p] --> adocbl[p] + h[c] ( B3966 AND ( B1252 AND B3005 AND B3006 ) ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] fe3dcit h, adocbl 0 ADPRDP ADPribose diphosphatase [c] : adprib + h2o --> amp + ( 2 ) h + r5p B3397 ( RXN0-1441 ) ( ( RIGHT REMOVE PROTON ) ) ADPSUGPPHOSPHAT-RXN :gene-match an ADP-sugar + H2O -> AMP + an alpha-D-aldose-1-phosphate ADP-SUGARS, Alpha-D-aldose-1-phosphates h, r5p, adprib 2 ADPT adenine phosphoribosyltransferase [c] : ade + prpp --> amp + ppi B0469 ( ADENPRIBOSYLTRAN-RXN ) ADENPRIBOSYLTRAN-RXN :gene-match diphosphate + AMP = 5-phosphoribosyl 1-pyrophosphate + adenine 4 ADSK adenylyl-sulfate kinase [c] : aps + atp --> adp + h + paps B2750 ( ADENYLYLSULFKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) ADENYLYLSULFKIN-RXN :gene-match APS + ATP = 3'-phosphoadenylyl-sulfate + ADP h 4 ADSL1r adenylsuccinate lyase [c] : dcamp <==> amp + fum B1131 ( AMPSYN-RXN ) AMPSYN-RXN :gene-match adenylo-succinate = fumarate + AMP 3 ADSL2r adenylosuccinate lyase [c] : 25aics <==> aicar + fum B1131 ( AICARSYN-RXN ) AICARSYN-RXN :gene-match 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole = fumarate + AICAR 3 ADSS adenylosuccinate synthase [c] : asp-L + gtp + imp --> dcamp + gdp + ( 2 ) h + pi B4177 ( ADENYLOSUCCINATE-SYNTHASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) ADENYLOSUCCINATE-SYNTHASE-RXN :gene-match L-aspartate + inosine-5'-phosphate + GTP = adenylo-succinate + phosphate + GDP h 6 AGDC N-acetylglucosamine-6-phosphate deacetylase [c] : acgam6p + h2o --> ac + gam6p B0677 ( NAG6PDEACET-RXN ) NAG6PDEACET-RXN :gene-match H2O + N-acetyl-D-glucosamine-6-phosphate -> acetate + D-glucosamine-6-phosphate 4 AGM4PCP "N-Acetyl-D-glucosamine( anhydrous )N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase" [c] : anhgm4p + h2o --> ala-D + anhgm3p B1192 ( :UNMAPPED-CPDS ) RXN0-2061 :gene-match UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanine + H2O -> L-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate ala-L, um4p, ugmd anhgm4p, anhgm3p, ala-D 1 AGMHE ADP-D-glycero-D-manno-heptose epimerase [c] : adphep-DD --> adphep-LD B3619 ( 5.1.3.20-RXN ) 5.1.3.20-RXN :gene-match ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose 2 AGMT agmatinase [c] : agm + h2o --> ptrc + urea B2937 ( AGMATIN-RXN ) AGMATIN-RXN :gene-match H2O + agmatine = urea + putrescine 4 AGMtex agmatine transport via diffusion ( extracellular to periplasm ) agm[e] <==> agm[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da agm 0 AGPAT120 1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C12:0 ) [c] : 1ddecg3p + ddcaACP --> ACP + pa120 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) ( :EXPANDED-RXN-MATCH ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein tdeACP, pa181, 1tdecg3p pa120, 1ddecg3p, ddcaACP 1 AGPAT140 1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C14:0 ) [c] : 1tdecg3p + myrsACP --> ACP + pa140 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) ( :EXPANDED-RXN-MATCH ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein tdeACP, pa181 pa140, myrsACP 2 AGPAT141 1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C14:1 ) [c] : 1tdec7eg3p + tdeACP --> ACP + pa141 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein 1tdecg3p, pa181 pa141, 1tdec7eg3p 2 AGPAT160 1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C16:0 ) [c] : 1hdecg3p + palmACP --> ACP + pa160 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein tdeACP, pa181, 1tdecg3p 1hdecg3p, pa160, palmACP 1 AGPAT161 1-hexadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C16:1 ) [c] : 1hdec9eg3p + hdeACP --> ACP + pa161 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) ( :EXPANDED-RXN-MATCH ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein tdeACP, pa181, 1tdecg3p hdeACP, pa161, 1hdec9eg3p 1 AGPAT180 1-octadecanoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C18:0 ) [c] : 1odecg3p + ocdcaACP --> ACP + pa180 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein tdeACP, pa181, 1tdecg3p ocdcaACP, 1odecg3p, pa180 1 AGPAT181 1-octadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase ( n-C18:1 ) [c] : 1odec11eg3p + octeACP --> ACP + pa181 B3018 ( 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN ) 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match a 1-acyl-sn-glycerol-3P + an acyl-ACP -> an L-phosphatidate + acyl carrier protein tdeACP, 1tdecg3p octeACP, 1odec11eg3p 2 AGPR N-acetyl-g-glutamyl-phosphate reductase [c] : acg5sa + nadp + pi <==> acg5p + h + nadph B3958 ( N-ACETYLGLUTPREDUCT-RXN ) ( ( RIGHT REMOVE PROTON ) ) N-ACETYLGLUTPREDUCT-RXN :gene-match N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetylglutamyl-phosphate + NADPH h 5 AGt3 silver transport out via proton antiport ag[c] + h[e] --> ag[e] + h[c] ( B0572 AND B0573 AND B0574 AND B0575 ) TRANS-RXN-90 :gene-match H+[periplasmic space] =H+[cytosol] ag 1 AHCYSNS S-adenosylhomocysteine nucleosidase [c] : ahcys + h2o --> ade + rhcys B0159 ( ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN ) ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN :gene-match S-adenosyl-L-homocysteine + H2O -> S-ribosyl-L-homocysteine + adenine 4 AICART phosphoribosylaminoimidazolecarboxamide formyltransferase [c] : 10fthf + aicar <==> fprica + thf B4006 ( AICARTRANSFORM-RXN ) AICARTRANSFORM-RXN :gene-match N10-formyl-THF + AICAR = tetrahydrofolate + phosphoribosyl-formamido-carboxamide 4 AIRC2 phosphoribosylaminoimidazole carboxylase [c] : air + atp + hco3 --> 5caiz + adp + h + pi B0522 RXN0-742 :gene-match 5-aminoimidazole ribonucleotide + ATP + H2O + CO2 = N5-carboxyaminoimidazole ribonucleotide + ADP + phosphate h2o, co2 h, hco3 5 AIRC3 phosphoribosylaminoimidazole carboxylase ( mutase rxn ) [c] : 5aizc <==> 5caiz B0523 ( RXN0-743 ) RXN0-743 :gene-match N5-carboxyaminoimidazole ribonucleotide = 4-carboxyaminoimidazole ribonucleotide 2 AKGDH 2-Oxogluterate dehydrogenase [c] : akg + coa + nad --> co2 + nadh + succoa ( B0116 AND B0726 AND B0727 ) ( 2OXOGLUTARATEDEH-RXN ) 2OXOGLUTARATEDEH-RXN :gene-match alpha-ketoglutarate + coenzyme A + NAD+ = succinyl-CoA + CO2 + NADH 6 AKGt2rpp 2-oxoglutarate reversible transport via symport ( periplasm ) akg[p] + h[p] <==> akg[c] + h[c] B2587 ( TRANS-RXN-23 ) TRANS-RXN-23 :gene-match H+[periplasmic space] + alpha-ketoglutarate[periplasmic space] =H+[cytosol] + alpha-ketoglutarate[cytosol] 2 AKGtex alpha-ketoglutarate transport via diffusion ( extracellular to periplasm ) akg[e] <==> akg[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da akg 0 ALAabcpp L-alanine transport via ABC system ( periplasm ) ala-L[p] + atp[c] + h2o[c] --> adp[c] + ala-L[c] + h[c] + pi[c] ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ABC-35-RXN :gene-match ATP + L-leucine[periplasmic space] + H2O =ADP + phosphate + L-leucine[cytosol] leu-L h, ala-L 4 ALAALAabcpp D-alanyl-D-alanine ( DalaDala ) transport via ABC system ( periplasm ) alaala[p] + atp[c] + h2o[c] --> adp[c] + alaala[c] + h[c] + pi[c] ( ( B3544 AND B3543 AND B3542 AND B3541 AND B3540 ) OR ( B1487 AND B1486 AND B1485 AND B1484 AND B1483 ) ) ( ABC-8-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) ABC-8-RXN :gene-match ATP + a dipeptide[periplasmic space] + H2O =ADP + phosphate + a dipeptide[cytosol] DIPEPTIDES h, alaala 4 ALAALAr D-alanine-D-alanine ligase ( reversible ) [c] : ( 2 ) ala-D + atp <==> adp + alaala + h + pi ( B0381 OR B0092 ) ( DALADALALIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) DALADALALIG-RXN :gene-match 2 D-alanine + ATP = D-alanyl-D-alanine + phosphate + ADP h 5 ALAALAtex D-alanyl-D-alanine ( DalaDala ) transport via diffusion ( extracellular to periplasm ) alaala[e] <==> alaala[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da alaala 0 ALAR alanine racemase [c] : ala-L <==> ala-D ( B4053 OR B1190 ) ( ALARACECAT-RXN ) ALARACECAT-RXN :gene-match L-alanine = D-alanine 2 ALAt2pp L-alanine transport in via proton symport ( periplasm ) ala-L[p] + h[p] --> ala-L[c] + h[c] B4208 TRANS-RXN-62A :gene-match H+[periplasmic space] + D-alanine[periplasmic space] =H+[cytosol] + D-alanine[cytosol] ala-D ala-L 1 ALAt4pp L-alanine transport in via sodium symport ( periplasm ) ala-L[p] + na1[p] --> ala-L[c] + na1[c] B0007 ( TRANS-RXN-125 ) TRANS-RXN-125 :gene-match Na+[periplasmic space] + L-alanine[periplasmic space] =Na+[cytosol] + L-alanine[cytosol] 2 ALATA_D2 D-alanine transaminase [c] : ala-D + pydx5p --> pyam5p + pyr ( B2551 OR B0870 ) LTAA-RXN :gene-match L-allo-threonine = glycine + acetaldehyde gly, athr-L, acald pydx5p, ala-D, pyam5p, pyr 0 ALATA_L2 alanine transaminase [c] : ala-L + pydx5p --> pyam5p + pyr ( B2551 OR B0870 ) LTAA-RXN :gene-match L-allo-threonine = glycine + acetaldehyde gly, athr-L, acald pydx5p, ala-L, pyam5p, pyr 0 ALAtex L-alanine transport via diffusion ( extracellular to periplasm ) ala-L[e] <==> ala-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ala-L 0 ALATRS Alanyl-tRNA synthetase [c] : ala-L + atp + trnaala --> alatrna + amp + ppi B2697 ( ALANINE--TRNA-LIGASE-RXN ) ALANINE--TRNA-LIGASE-RXN :gene-match tRNAala + L-alanine + ATP -> L-alanyl-tRNAala + diphosphate + AMP 6 ALCD19 alcohol dehydrogenase ( glycerol ) [c] : glyald + h + nadh <==> glyc + nad B0356 RXN-2962 :gene-match S-hydroxymethylglutathione + NAD(P)+ = S-formylglutathione + NAD(P)H + H+ NAD(P), hmgth, NAD(P)H, Sfglutth glyald, nadh, nad, glyc 1 ALCD2x alcohol dehydrogenase ( ethanol ) [c] : etoh + nad <==> acald + h + nadh ( B0356 OR B1478 OR B1241 ) ( ALCOHOL-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) ALCOHOL-DEHYDROG-RXN :gene-match acetaldehyde + NADH = ethanol + NAD+ h 4 ALDD19x "aldehyde dehydrogenase ( phenylacetaldehyde, NAD )" [c] : h2o + nad + pacald --> ( 2 ) h + nadh + pac B1385 ( PHENDEHYD-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHENDEHYD-RXN :gene-match H2O + NAD+ + phenylacetaldehyde = NADH + phenylacetate h 5 ALDD2x "aldehyde dehydrogenase ( acetaldehyde, NAD )" [c] : acald + h2o + nad --> ac + ( 2 ) h + nadh B1300 ( RXN66-3 ) ( :METACYC ( RIGHT REMOVE PROTON ) ) RXN0-3922 :gene-match gamma-glutamyl-gamma-aminobutyraldehyde + NAD(P)+ + H2O = gamma-glutamyl-gamma-aminobutyrate + NAD(P)H + H+ NAD(P), gg4abut, NAD(P)H, ggbutal ac, nadh, acald, nad 2 ALDD2y "aldehyde dehydrogenase ( acetaldehyde, NADP )" [c] : acald + h2o + nadp --> ac + ( 2 ) h + nadph B3588 ( RXN0-3962 ) RXN0-3962 :gene-match acetaldehyde + NADP+ + H2O -> acetate + NADPH + H+ 6 ALDD3y "aldehyde dehydrogenase ( propanal, NADP )" [c] : h2o + nadp + ppal --> ( 2 ) h + nadph + ppa B3588 RXN0-3962 :gene-match acetaldehyde + NADP+ + H2O -> acetate + NADPH + H+ ac, acald ppa, ppal 4 ALLabcpp D-allose transport via ABC system ( periplasm ) all-D[p] + atp[c] + h2o[c] --> adp[c] + all-D[c] + h[c] + pi[c] ( B4087 AND B4088 AND B4086 ) ( ABC-42-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-42-RXN :gene-match D-allose[periplasmic space] + ATP + H2O =D-allose[cytosol] + ADP + phosphate h 5 ALLK Allose kinase [c] : all-D + atp --> adp + all6p + h B4084 ( ALLOSE-KINASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) ALLOSE-KINASE-RXN :gene-match D-allose + ATP -> D-allose-6-phosphate + ADP h 4 ALLPI Allose 6-phosphate isomerase [c] : all6p <==> allul6p B4090 ( RXN0-303 ) RXN0-303 :gene-match D-allose-6-phosphate = D-allulose-6-phosphate 2 ALLTAMH allantoate amidohydrolase [c] : alltt + ( 2 ) h + ( 2 ) h2o --> co2 + ( 2 ) nh4 + urdglyc B0516 ALLANTOICASE-RXN :gene-match allantoate + H2O = (S)-ureidoglycolate + urea urea h, co2, nh4 3 ALLtex Allose transport via diffusion ( extracellular to periplasm ) all-D[e] <==> all-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da all-D 0 ALLTN allantoinase [c] : alltn + h2o --> alltt + h B0512 ( ALLANTOINASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) ALLANTOINASE-RXN :gene-match H2O + allantoin = allantoate h 3 ALLTNtex allantoin transport via diffusion ( extracellular to periplasm ) alltn[e] <==> alltn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da alltn 0 ALLULPE Allulose 6-phosphate epimerase [c] : allul6p <==> f6p B4085 ( RXN0-304 ) RXN0-304 :gene-match D-allulose-6-phosphate = D-fructose-6-phosphate 2 ALR2 aldose reductase ( methylglyoxal ) [c] : h + mthgxl + nadph --> acetol + nadp ( B3012 OR B0207 OR B1781 OR B3001 ) ( RXN0-4281 ) ( ( LEFT REMOVE PROTON ) ) RXN0-4281 :gene-match methylglyoxal + NADPH -> acetol + NADP+ h 4 ALR4x aldose reductase ( acetol ) [c] : acetol + h + nadh --> 12ppd-R + nad B3945 ( :UNMAPPED-CPDS ) GLYCDEH-RXN :gene-match NAD+ + glycerol = NADH + dihydroxy-acetone glyc, dha acetol, h, 12ppd-R 2 ALTRH altronate hydrolase [c] : altrn --> 2ddglcn + h2o B3091 ( ALTRODEHYDRAT-RXN ) ALTRODEHYDRAT-RXN :gene-match D-altronate -> H2O + 2-dehydro-3-deoxy-D-gluconate 3 AM4PCP "anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase" [c] : anhm4p + h2o --> ala-D + anhm3p B1192 ( :UNMAPPED-CPDS ) RXN0-2061 :gene-match UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanine + H2O -> L-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate ala-L, um4p, ugmd ala-D, anhm4p, anhm3p 1 AMALT1 Amylomaltase ( maltotriose ) [c] : malt + malttr --> glc-D + maltttr B3416 ( AMYLOMALT-RXN ) AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC glc-D 3 AMALT2 Amylomaltase ( maltotetraose ) [c] : malt + maltttr --> glc-D + maltpt B3416 AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC, malttr maltpt, glc-D 2 AMALT3 Amylomaltase ( maltopentaose ) [c] : malt + maltpt --> glc-D + malthx B3416 AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC, malttr, maltttr malthx, maltpt, glc-D 1 AMALT4 Amylomaltase ( maltohexaose ) [c] : malt + malthx --> glc-D + malthp B3416 AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC, malttr, maltttr malthx, malthp, glc-D 1 AMANAPEr N-acetylmannosamine 6-phosphate epimerase [c] : acmanap <==> acgam6p B3223 ( NANE-RXN ) NANE-RXN :gene-match N-acetyl-D-mannosamine-6-phosphate = N-acetyl-D-glucosamine-6-phosphate 2 AMANK N-acetyl-D-mannosamine kinase [c] : acmana + atp --> acmanap + adp + h B3222 ( NANK-RXN ) ( ( RIGHT REMOVE PROTON ) ) NANK-RXN :gene-match N-acetylmannosamine + ATP = N-acetyl-D-mannosamine-6-phosphate + ADP h 4 AMAOTr adenosylmethionine-8-amino-7-oxononanoate transaminase [c] : 8aonn + amet <==> amob + dann B0774 ( DAPASYN-RXN ) DAPASYN-RXN :gene-match S-adenosyl-L-methionine + 8-amino-7-oxononanoate = S-adenosyl-4-methylthio-2-oxobutanoate + 7,8-diaminononanoate 4 AMMQLT8 S-adenosylmethione:2-demthylmenaquinole methyltransferase ( menaquinone 8 ) [c] : 2dmmql8 + amet --> ahcys + h + mql8 B3833 ADOMET-DMK-METHYLTRANSFER-RXN :gene-match demethylmenaquinone-8 + S-adenosyl-L-methionine = menaquinone-8 + S-adenosyl-L-homocysteine mqn8 h, mql8 3 AMPMS2 4-amino-2-methyl-5-phosphomethylpyrimidine synthetase [c] : air + h2o + nad --> 4ampm + ( 2 ) for + ( 3 ) h + nadh B3994 PYRIMSYN1-RXN :gene-match 5-aminoimidazole ribonucleotide = hydroxymethylpyrimidine phosphate h, h2o, nadh, for, nad 2 AMPN AMP nucleosidase [c] : amp + h2o --> ade + r5p B1982 ( AMP-NUCLEOSID-RXN ) AMP-NUCLEOSID-RXN :gene-match H2O + AMP = D-ribose-5-phosphate + adenine 4 AMPTASECG alanyl aminopeptidase ( cys-gly ) [c] : cgly + h2o --> cys-L + gly ( B0237 OR B4260 OR B2523 OR B0932 ) ( :UNMAPPED-CPDS ) 3.4.11.1-RXN :gene-match a peptide + H2O = an amino acid + a peptide Peptides, Amino-Acid gly, cys-L, cgly 1 AMPTASEPG aminopeptidase ( pro-gly ) [c] : h2o + progly --> gly + pro-L ( B0932 OR B4260 OR B0237 OR B2523 ) ( :UNMAPPED-CPDS ) 3.4.11.1-RXN :gene-match a peptide + H2O = an amino acid + a peptide Peptides, Amino-Acid gly, pro-L, progly 1 AMPtex AMP transport via diffusion ( extracellular to periplasm ) amp[e] <==> amp[p] ( B0929 OR B1377 OR B2215 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da amp 0 ANHGMtex GlcNAc-anhMurNAc transport via diffusion ( extracellular to periplasm ) anhgm[e] <==> anhgm[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da anhgm 0 ANHMK "1,6-anhydrous-N-Acetylmuramate kinase" [c] : anhm + atp + h2o --> acmum6p + adp + h B1640 RXN0-4621 :gene-match 1,6-anhMurNAc + ATP = MurNAc-6-P + ADP h, h2o 4 ANPRT anthranilate phosphoribosyltransferase [c] : anth + prpp --> ppi + pran B1263 ( PRTRANS-RXN ) PRTRANS-RXN :gene-match N-(5'-phosphoribosyl)-anthranilate + diphosphate = anthranilate + 5-phosphoribosyl 1-pyrophosphate 4 ANS anthranilate synthase [c] : chor + gln-L --> anth + glu-L + h + pyr ( B1263 AND B1264 ) ( ANTHRANSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) ANTHRANSYN-RXN :gene-match chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate h 5 AOXSr 8-amino-7-oxononanoate synthase [c] : ala-L + h + pmcoa <==> 8aonn + co2 + coa B0776 ( 7KAPSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) 7KAPSYN-RXN :gene-match L-alanine + pimelyl-CoA = CO2 + coenzyme A + 8-amino-7-oxononanoate h 5 AP4AH Ap4A hydrolase [c] : ap4a + h2o --> ( 2 ) adp + ( 2 ) h B0049 ( 3.6.1.41-RXN ) ( ( RIGHT REMOVE PROTON ) ) 3.6.1.41-RXN :gene-match H2O + P(1),P(4)-bis(5'-adenosyl)tetraphosphate -> 2 ADP h 3 AP5AH Ap5A hydrolase [c] : ap5a + h2o --> adp + atp + ( 2 ) h B0049 ( :UNMAPPED-CPDS ) 3.6.1.41-RXN :gene-match H2O + P(1),P(4)-bis(5'-adenosyl)tetraphosphate -> 2 ADP ap4a ap5a, atp, h 2 APRAUR 5-amino-6-( 5-phosphoribosylamino )uracil reductase [c] : 5apru + h + nadph --> 5aprbu + nadp B0414 ( RIBOFLAVINSYNREDUC-RXN ) RIBOFLAVINSYNREDUC-RXN :gene-match 5-amino-6-(5'-phosphoribitylamino)uracil + NADP+ = 5-amino-6-(5'-phosphoribosylamino)uracil + NADPH + H+ 5 ARAI L-arabinose isomerase [c] : arab-L <==> rbl-L B0062 ( ARABISOM-RXN ) ARABISOM-RXN :gene-match L-arabinose = L-ribulose 2 ARBabcpp L-arabinose transport via ABC system ( periplasm ) arab-L[p] + atp[c] + h2o[c] --> adp[c] + arab-L[c] + h[c] + pi[c] ( B1901 AND B1900 AND B4460 ) ( ABC-2-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-2-RXN :gene-match H2O + alpha-L-arabinose[periplasmic space] + ATP =alpha-L-arabinose[cytosol] + phosphate + ADP ARABINOSE h, arab-L 4 ARBt2rpp L-arabinose transport via proton symport ( periplasm ) arab-L[p] + h[p] <==> arab-L[c] + h[c] B2841 ( TRANS-RXN-10 ) TRANS-RXN-10 :gene-match H+[periplasmic space] + alpha-L-arabinose[periplasmic space] =H+[cytosol] + alpha-L-arabinose[cytosol] ARABINOSE arab-L 1 ARBt3ipp L-arabinose transport via proton antiport ( periplasm ) arab-L[c] + h[p] --> arab-L[p] + h[c] B1528 ( TRANS-RXN-40 ) TRANS-RXN-40 :gene-match alpha-L-arabinose[cytosol] + H+[periplasmic space] =alpha-L-arabinose[periplasmic space] + H+[cytosol] ARABINOSE arab-L 1 ARBtex L-arabinose transport via diffusion ( extracellular to periplasm ) arab-L[e] <==> arab-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da arab-L 0 ARBTNabcpp aerobactin transport via ABC system ( periplasm ) arbtn-fe3[p] + atp[c] + h2o[c] --> adp[c] + arbtn-fe3[c] + h[c] + pi[c] ( B0153 AND B0151 AND B0152 ) ( :UNMAPPED-CPDS ) ABC-11-RXN :gene-match ATP + iron (III) hydroxamate complex[periplasmic space] + H2O =ADP + phosphate + iron (III) hydroxamate complex[cytosol] fe3hox h, arbtn-fe3 4 ARGabcpp L-arginine transport via ABC system ( periplasm ) arg-L[p] + atp[c] + h2o[c] --> adp[c] + arg-L[c] + h[c] + pi[c] ( ( B0863 AND B0860 AND B0861 AND B0864 AND B0862 ) OR ( B2310 AND B2307 AND B2306 AND B2308 ) ) ( ABC-4-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-4-RXN :gene-match ATP + L-arginine[periplasmic space] + H2O =ADP + phosphate + L-arginine[cytosol] h 5 ARGAGMt7pp Arginine/agmatine antiport ( periplasm ) agm[c] + arg-L[p] <==> agm[p] + arg-L[c] B4115 ( RXN0-2162 ) RXN0-2162 :gene-match L-arginine[periplasmic space] + agmatine[cytosol] =L-arginine[cytosol] + agmatine[periplasmic space] 2 ARGDC arginine decarboxylase [c] : arg-L + h --> agm + co2 B4117 ( ARGDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) ARGDECARBOX-RXN :gene-match L-arginine = CO2 + agmatine h 3 ARGDCpp arginine decarboxylase [p] : arg-L + h --> agm + co2 B2938 ARGDECARBOX-RXN :gene-match L-arginine = CO2 + agmatine h 3 ARGSL argininosuccinate lyase [c] : argsuc <==> arg-L + fum B3960 ( ARGSUCCINLYA-RXN ) ARGSUCCINLYA-RXN :gene-match L-arginino-succinate = L-arginine + fumarate 3 ARGSS argininosuccinate synthase [c] : asp-L + atp + citr-L --> amp + argsuc + h + ppi B3172 ( ARGSUCCINSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) ARGSUCCINSYN-RXN :gene-match L-aspartate + citrulline + ATP = L-arginino-succinate + diphosphate + AMP h 6 ARGtex L-arginine transport via diffusion ( extracellular to periplasm ) arg-L[e] <==> arg-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da arg-L 0 ARGTRS Arginyl-tRNA synthetase [c] : arg-L + atp + trnaarg --> amp + argtrna + ppi B1876 ( ARGININE--TRNA-LIGASE-RXN ) ARGININE--TRNA-LIGASE-RXN :gene-match tRNAarg + L-arginine + ATP = L-arginyl-tRNAarg + diphosphate + AMP 6 ASAD aspartate-semialdehyde dehydrogenase [c] : aspsa + nadp + pi <==> 4pasp + h + nadph B3433 ( ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN :gene-match NADP+ + phosphate + L-aspartate-semialdehyde = NADPH + L-aspartyl-4-phosphate h 5 ASCBptspp L-ascorbate transport via PEP:Pyr PTS ( periplasm ) ascb-L[p] + pep[c] --> ascb6p[c] + pyr[c] ( B2415 AND B2416 AND B4195 AND B4194 AND B4193 ) ( RXN0-2461 ) RXN0-2461 :gene-match phosphoenolpyruvate + L-ascorbate[periplasmic space] =L-ascorbate-6-phosphate[cytosol] + pyruvate 4 ASCBtex L-ascorbate transport via diffusion ( extracellular to periplasm ) ascb-L[e] <==> ascb-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ascb-L 0 ASNN L-asparaginase [c] : asn-L + h2o --> asp-L + nh4 ( B1767 OR B0828 ) ( ASPARAGHYD-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ASPARAGHYD-RXN :gene-match L-asparagine + H2O = L-aspartate + ammonia AMMONIA nh4 3 ASNNpp L-asparaginase [p] : asn-L + h2o --> asp-L + nh4 B2957 ASPARAGHYD-RXN :gene-match L-asparagine + H2O = L-aspartate + ammonia AMMONIA nh4 3 ASNS1 asparagine synthase ( glutamine-hydrolysing ) [c] : asp-L + atp + gln-L + h2o --> amp + asn-L + glu-L + h + ppi B0674 ( ASNSYNB-RXN ) ( ( RIGHT REMOVE PROTON ) ) ASNSYNB-RXN :gene-match L-glutamine + L-aspartate + ATP + H2O -> L-glutamate + L-asparagine + diphosphate + AMP h 8 ASNS2 asparagine synthetase [c] : asp-L + atp + nh4 --> amp + asn-L + h + ppi B3744 ( ASNSYNA-RXN ) ( ( LEFT SUBSTITUTE AMMONIA AMMONIUM ) ( RIGHT REMOVE PROTON ) ) ASNSYNA-RXN :gene-match ammonia + L-aspartate + ATP -> L-asparagine + diphosphate + AMP AMMONIA h, nh4 5 ASNt2rpp L-asparagine reversible transport via proton symport ( periplasm ) asn-L[p] + h[p] <==> asn-L[c] + h[c] B1453 ( TRANS-RXN-262 ) TRANS-RXN-262 :gene-match L-asparagine[periplasmic space] + H+[periplasmic space] =H+[cytosol] + L-asparagine[cytosol] 2 ASNtex L-asparagine transport via diffusion ( extracellular to periplasm ) asn-L[e] <==> asn-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da asn-L 0 ASNTRS Asparaginyl-tRNA synthetase [c] : asn-L + atp + trnaasn --> amp + asntrna + ppi B0930 ( ASPARAGINE--TRNA-LIGASE-RXN ) ASPARAGINE--TRNA-LIGASE-RXN :gene-match tRNAasn + L-asparagine + ATP -> L-asparaginyl-tRNAasn + diphosphate + AMP 6 ASO3t8pp arsenite efflux via ATP hydrolysis ( periplasm ) aso3[c] + atp[c] + h2o[c] --> adp[c] + aso3[p] + h[c] + pi[c] B3502 ( 3.6.3.16-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) TRANS-RXN-7 :gene-match ATP + arsenate[cytosol] + H2O =ADP + phosphate + arsenate[periplasmic space] aso4 h, aso3 4 ASO3tex arsenite transport via diffusion ( extracellular to periplasm ) aso3[e] <==> aso3[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da aso3 0 ASP1DC aspartate 1-decarboxylase [c] : asp-L + h --> ala-B + co2 B0131 ( ASPDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) ASPDECARBOX-RXN :gene-match L-aspartate = beta-alanine + CO2 h 3 ASPabcpp L-aspartate transport via ABC system ( periplasm ) asp-L[p] + atp[c] + h2o[c] --> adp[c] + asp-L[c] + h[c] + pi[c] ( B0655 AND B0654 AND B0653 AND B0652 ) ABC-13-RXN :gene-match ATP + L-glutamate[periplasmic space] + H2O =ADP + phosphate + L-glutamate[cytosol] glu-L h, asp-L 4 ASPCT aspartate carbamoyltransferase [c] : asp-L + cbp --> cbasp + h + pi ( B4244 AND B4245 ) ( ASPCARBTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) ASPCARBTRANS-RXN :gene-match L-aspartate + carbamoyl-phosphate = carbamoyl-L-aspartate + phosphate h 4 ASPK aspartate kinase [c] : asp-L + atp <==> 4pasp + adp ( B0002 OR B3940 OR B4024 ) ( ASPARTATEKIN-RXN ) ASPARTATEKIN-RXN :gene-match L-aspartate + ATP = L-aspartyl-4-phosphate + ADP 4 ASPO3 L-aspartate oxidase [c] : asp-L + q8 --> h + iasp + q8h2 B2574 L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate o2, h2o2 q8, q8h2, h 2 ASPO4 L-aspartate oxidase [c] : asp-L + mqn8 --> h + iasp + mql8 B2574 L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate o2, h2o2 mqn8, h, mql8 2 ASPO5 L-aspartate oxidase [c] : asp-L + fum --> h + iasp + succ B2574 L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate o2, h2o2 h, succ, fum 2 ASPO6 L-aspartate oxidase [c] : asp-L + o2 --> h + h2o2 + iasp B2574 ( L-ASPARTATE-OXID-RXN ) ( ( RIGHT REMOVE PROTON ) ) L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate h 4 ASPT L-aspartase [c] : asp-L --> fum + nh4 B4139 ( ASPARTASE-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ASPARTASE-RXN :gene-match L-aspartate = fumarate + ammonia AMMONIA nh4 2 ASPt2_2pp Aspartate transport via proton symport ( 2 H ) ( periplasm ) asp-L[p] + ( 2 ) h[p] --> asp-L[c] + ( 2 ) h[c] B3528 ( TRANS-RXN-122A ) TRANS-RXN-121 :gene-match Na+[periplasmic space] + succinate[periplasmic space] =Na+[cytosol] + succinate[cytosol] succ, na1 h, asp-L 0 ASPt2_3pp L-asparate transport via proton symport ( 3 H ) ( periplasm ) asp-L[p] + ( 3 ) h[p] --> asp-L[c] + ( 3 ) h[c] ( B4138 OR B4123 ) ( TRANS-RXN-122A ) TRANS-RXN-106A :gene-match a C4-dicarboxylate[periplasmic space] + L-aspartate[cytosol] =L-aspartate[periplasmic space] + a C4-dicarboxylate[cytosol] C4-dicarboxylates h 1 ASPt2pp L-aspartate transport in via proton symport ( periplasm ) asp-L[p] + h[p] --> asp-L[c] + h[c] B4077 ( TRANS-RXN-122A ) TRANS-RXN-122A :gene-match H+[periplasmic space] + L-aspartate[periplasmic space] =H+[cytosol] + L-aspartate[cytosol] 2 ASPTA aspartate transaminase [c] : akg + asp-L <==> glu-L + oaa B0928 ( ASPAMINOTRANS-RXN ) ASPAMINOTRANS-RXN :gene-match L-aspartate + alpha-ketoglutarate = oxaloacetate + L-glutamate 4 ASPtex L-aspartate transport via diffusion ( extracellular to periplasm ) asp-L[e] <==> asp-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da asp-L 0 ASPTRS Aspartyl-tRNA synthetase [c] : asp-L + atp + trnaasp --> amp + asptrna + ppi B1866 ( ASPARTATE--TRNA-LIGASE-RXN ) ASPARTATE--TRNA-LIGASE-RXN :gene-match tRNAasp + L-aspartate + ATP -> L-aspartyl-tRNAasp + diphosphate + AMP 6 ASR arsenate reductase [c] : aso4 + ( 2 ) gthrd --> aso3 + gthox + h2o ( B3503 AND B1064 ) RXN-982 :gene-match arsenate + a reduced glutaredoxin 2 = arsenite + an oxidized glutaredoxin 2 GLUTAREDOXIN-2-OXIDIZED, GLUTAREDOXIN-2-REDUCED gthrd, h2o, gthox 2 AST Arginine succinyltransferase [c] : arg-L + succoa --> coa + h + sucarg B1747 ( ARGININE-N-SUCCINYLTRANSFERASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) ARGININE-N-SUCCINYLTRANSFERASE-RXN :gene-match L-arginine + succinyl-CoA = N2-succinyl-L-arginine + coenzyme A h 4 ATHRDHr L-allo-threonine dehydrogenase [c] : athr-L + nadp <==> 2aobut + h + nadph B1539 RXN0-2201 :gene-match L-serine + NADP+ -> 2-aminomalonate-semialdehyde + NADPH + H+ ser-L, 2amsa 2aobut, athr-L 3 ATPPRT ATP phosphoribosyltransferase [c] : atp + prpp --> ppi + prbatp B2019 ( ATPPHOSPHORIBOSYLTRANS-RXN ) ATPPHOSPHORIBOSYLTRANS-RXN :gene-match phosphoribosyl-ATP + diphosphate = ATP + 5-phosphoribosyl 1-pyrophosphate 4 ATPS4rpp ATP synthase ( four protons for one ATP ) ( periplasm ) adp[c] + ( 4 ) h[p] + pi[c] <==> atp[c] + ( 3 ) h[c] + h2o[c] ( ( ( B3736 AND B3737 AND B3738 ) AND ( B3731 AND B3732 AND B3733 AND B3734 AND B3735 ) ) OR ( ( B3736 AND B3737 AND B3738 ) AND ( B3731 AND B3732 AND B3733 AND B3734 AND B3735 ) AND B3739 ) ) ( ATPSYN-RXN ) ATPSYN-RXN :gene-match H+[cytosol] + H2O + ATP =H+[periplasmic space] + phosphate + ADP 5 BALAt2pp beta-alanine transport in via proton symport ( periplasm ) ala-B[p] + h[p] --> ala-B[c] + h[c] B4208 TRANS-RXN-62A :gene-match H+[periplasmic space] + D-alanine[periplasmic space] =H+[cytosol] + D-alanine[cytosol] ala-D ala-B 1 BALAtex beta-alanine transport via diffusion ( extracellular to periplasm ) ala-B[e] <==> ala-B[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ala-B 0 BETALDHx betaine-aldehyde dehydrogenase [c] : betald + h2o + nad --> glyb + ( 2 ) h + nadh B0312 ( BADH-RXN ) ( ( RIGHT REMOVE PROTON ) ) BADH-RXN :gene-match betaine aldehyde + NAD+ + H2O -> glycine betaine + NADH h 5 BETALDHy betaine-aldehyde dehydrogenase [c] : betald + h2o + nadp --> glyb + ( 2 ) h + nadph B0312 BADH-RXN :gene-match betaine aldehyde + NAD+ + H2O -> glycine betaine + NADH nadh, nad nadph, h, nadp 3 BSORx Biotin sulfoxide reductase [c] : btnso + h + nadh --> btn + h2o + nad B3551 R401-RXN :gene-match d-biotin d-sulfoxide + 2 e- + 2 H+ = biotin + H2O E- nadh, nad 4 BSORy Biotin sulfoxide reductase [c] : btnso + h + nadph --> btn + h2o + nadp B3551 R401-RXN :gene-match d-biotin d-sulfoxide + 2 e- + 2 H+ = biotin + H2O E- nadph, nadp 4 BTS4 Biotin synthase [c] : amet + dtbt + s --> btn + dad-5 + h + met-L B0775 ( 2.8.1.6-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2.8.1.6-RXN :gene-match dethiobiotin + 2 S-adenosyl-L-methionine + sulfur donor -> biotin + 2 5'-deoxyadenosine + 2 L-methionine h 6 BUTCT Acetyl-CoA:butyrate-CoA transferase [c] : accoa + but --> ac + btcoa ( B2221 AND B2222 ) ( R11-RXN ) ( :METACYC ) ACECOATRANS-RXN :gene-match an acyl-CoA + acetate = a fatty acid + acetyl-CoA a fatty acid, tdecoa btcoa, but 2 BUTSO3abcpp butanesulfonate transport via ABC system ( periplasm ) atp[c] + butso3[p] + h2o[c] --> adp[c] + butso3[c] + h[c] + pi[c] ( ( B0936 AND B0933 AND B0934 ) OR ( B0365 AND B0366 AND B0367 ) ) ABC-64-RXN :gene-match taurine[periplasmic space] + ATP + H2O =taurine[cytosol] + ADP + phosphate taur h, butso3 4 BUTSO3tex butanesulfonate transport via diffusion ( extracellular to periplasm ) butso3[e] <==> butso3[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da butso3 0 BUTtex Butyrate transport via diffusion ( extracellular to periplasm ) but[e] <==> but[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da but 0 CA2t3pp calcium ( Ca+2 ) transport out via proton antiport ( periplasm ) ca2[c] + h[p] --> ca2[p] + h[c] B1216 ( TRANS-RXN-144 ) TRANS-RXN-144 :gene-match Ca2+[cytosol] + H+[periplasmic space] =Ca2+[periplasmic space] + H+[cytosol] 2 CA2tex calcium ( Ca+2 ) transport via diffusion ( extracellular to periplasm ) ca2[e] <==> ca2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ca2 0 CADVtpp Lysine/Cadaverine antiporter ( periplasm ) 15dap[c] + h[p] + lys-L[p] --> 15dap[p] + h[c] + lys-L[c] B4132 TRANS-RXN-68 :gene-match L-lysine[periplasmic space] + cadaverine[cytosol] + H+[periplasmic space] =L-lysine[cytosol] + cadaverine[periplasmic space] + H+[cytosol] 3 CAT catalase [c] : ( 2 ) h2o2 --> ( 2 ) h2o + o2 ( B1732 OR B3942 ) ( CATAL-RXN ) CATAL-RXN :gene-match 2 H2O2 = 2 H2O + O2 3 CAt6pp calcium / sodium antiporter ( 1:1 ) ca2[c] + na1[p] <==> ca2[p] + na1[c] B3196 ( TRANS-RXN-128 ) TRANS-RXN-128 :gene-match Na+[periplasmic space] + Ca2+[cytosol] =Na+[cytosol] + Ca2+[periplasmic space] 2 CBIAT Cobinamide adenyltransferase [c] : atp + cbi + h <==> adocbi + pppi B1270 BTUR2-RXN :gene-match ATP + cobinamide + H2O = phosphate + diphosphate + adenosylcobinamide ppi, pi, h2o h, pppi 3 CBItonex Cobinamide transport via ton system ( extermal ) cbi[e] + h[p] --> cbi[p] + h[c] ( B3966 AND ( B1252 AND B3005 AND B3006 ) ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] fe3dcit h, cbi 0 CBIuabcpp "Cobinamide transport via ABC system ( uptake, periplasm )" atp[c] + cbi[p] + h2o[c] --> adp[c] + cbi[c] + h[c] + pi[c] ( B1711 AND B1709 AND B0158 ) ABC-5-RXN :gene-match ATP + cob(I)alamin[periplasmic space] + H2O =ADP + phosphate + cob(I)alamin[cytosol] cbl1 h, cbi 4 CBL1abcpp Cob( 1 )alamin transport via ABC system ( periplasm ) atp[c] + cbl1[p] + h2o[c] --> adp[c] + cbl1[c] + h[c] + pi[c] ( B1711 AND B1709 AND B0158 ) ( ABC-5-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-5-RXN :gene-match ATP + cob(I)alamin[periplasmic space] + H2O =ADP + phosphate + cob(I)alamin[cytosol] h 5 CBL1tonex Cob( 1 )alamin transport via ton system ( extermal ) cbl1[e] + h[p] --> cbl1[p] + h[c] ( B3966 AND ( B1252 AND B3005 AND B3006 ) ) ( RXN0-1565 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-1565 :gene-match cob(I)alamin[extracellular space] =cob(I)alamin[periplasmic space] h 1 CBLAT cob( I )alamin adenosyltransferase [c] : atp + cbl1 + h <==> adocbl + pppi B1270 COBALADENOSYLTRANS-RXN :gene-match ATP + cob(I)alamin + H2O = coenzyme B12 + PPPi h2o h 4 CBPS carbamoyl-phosphate synthase ( glutamine-hydrolysing ) [c] : ( 2 ) atp + gln-L + h2o + hco3 --> ( 2 ) adp + cbp + glu-L + ( 2 ) h + pi ( B0032 AND B0033 ) CARBPSYN-RXN :gene-match 2 ATP + L-glutamine + CO2 + 2 H2O = carbamoyl-phosphate + L-glutamate + phosphate + 2 ADP co2 h, hco3 7 CD2t3pp cadmium ( Cd+2 ) transport out via proton antiport ( periplasm ) cd2[c] + h[p] --> cd2[p] + h[c] ( B0752 OR B3915 ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 cd2 1 CD2tex cadmium ( Cd+2 ) transport via diffusion ( extracellular to periplasm ) cd2[e] <==> cd2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cd2 0 CD2tpp cadmium ( +2 ) transport in via permease ( no H+ ) cd2[p] --> cd2[c] B3040 RXN0-10 :gene-match Cd2+[periplasmic space] =Cd2+[cytoplasm] 1 CDAPPA120 CDP-Diacylglycerol pyrophostatase ( n-C12:0 ) [c] : cdpdddecg + h2o --> cmp + ( 2 ) h + pa120 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate cdpdtdecg, pa181 h, cdpdddecg, pa120 2 CDAPPA140 CDP-Diacylglycerol pyrophostatase ( n-C14:0 ) [c] : cdpdtdecg + h2o --> cmp + ( 2 ) h + pa140 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate pa181 h, pa140 3 CDAPPA141 CDP-Diacylglycerol pyrophostatase ( n-C14:1 ) [c] : cdpdtdec7eg + h2o --> cmp + ( 2 ) h + pa141 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate cdpdtdecg, pa181 h, pa141, cdpdtdec7eg 2 CDAPPA160 CDP-Diacylglycerol pyrophostatase ( n-C16:0 ) [c] : cdpdhdecg + h2o --> cmp + ( 2 ) h + pa160 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate cdpdtdecg, pa181 cdpdhdecg, pa160, h 2 CDAPPA161 CDP-Diacylglycerol pyrophostatase ( n-C16:1 ) [c] : cdpdhdec9eg + h2o --> cmp + ( 2 ) h + pa161 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate cdpdtdecg, pa181 cdpdhdec9eg, pa161, h 2 CDAPPA180 CDP-Diacylglycerol pyrophostatase ( n-C18:0 ) [c] : cdpdodecg + h2o --> cmp + ( 2 ) h + pa180 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate cdpdtdecg, pa181 h, cdpdodecg, pa180 2 CDAPPA181 CDP-Diacylglycerol pyrophostatase ( n-C18:1 ) [c] : cdpdodec11eg + h2o --> cmp + ( 2 ) h + pa181 B3918 ( CDPDIGLYPYPHOSPHA-RXN ) ( ( RIGHT REMOVE PROTON ) ) CDPDIGLYPYPHOSPHA-RXN :gene-match a CDP-diacylglycerol + H2O = CMP + an L-phosphatidate cdpdtdecg h, cdpdodec11eg 3 CDPMEK 4-( cytidine 5'-diphospho )-2-C-methyl-D-erythritol kinase [c] : 4c2me + atp --> 2p4c2me + adp + h B1208 ( 2.7.1.148-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2.7.1.148-RXN :gene-match 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ATP = 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ADP h 4 CFAS160E "cyclopropane fatty acid synthase ( Phosphatidylethanolamine, n-C16:0 )" [c] : ( 2 ) amet + pe161 --> ( 2 ) ahcys + cpe160 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine cpg180, Phospholipid-Olefinic-Fatty-Acids pe161, h, cpe160 2 CFAS160G "cyclopropane fatty acid synthase ( Phosphatidylglycerol, n-C16:0 )" [c] : ( 2 ) amet + pg161 --> ( 2 ) ahcys + cpg160 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine cpg180, Phospholipid-Olefinic-Fatty-Acids h, pg161, cpg160 2 CFAS180E "cyclopropane fatty acid synthase ( Phosphatidylethanolamine, n-C18:0 )" [c] : ( 2 ) amet + pe181 --> ( 2 ) ahcys + cpe180 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine cpg180, Phospholipid-Olefinic-Fatty-Acids h, pe181, cpe180 2 CFAS180G "cyclopropane fatty acid synthase ( Phosphatidylglycerol, n-C18:0 )" [c] : ( 2 ) amet + pg181 --> ( 2 ) ahcys + cpg180 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine Phospholipid-Olefinic-Fatty-Acids pg181, h 3 CGLYabcpp L-Cysteinylglycine ( Cys-Gly ) transport via ABC system ( periplasm ) atp[c] + cgly[p] + h2o[c] --> adp[c] + cgly[c] + h[c] + pi[c] ( B3544 AND B3543 AND B3542 AND B3541 AND B3540 ) ( :UNMAPPED-CPDS ) ABC-8-RXN :gene-match ATP + a dipeptide[periplasmic space] + H2O =ADP + phosphate + a dipeptide[cytosol] DIPEPTIDES h, cgly 4 CGLYtex L-Cysteinylglycine transport via diffusion ( extracellular to periplasm ) cgly[e] <==> cgly[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cgly 0 CHLt2pp choline transport via proton symport ( periplasm ) chol[p] + h[p] --> chol[c] + h[c] ( B0314 OR B1801 ) ( TRANS-RXN-99 ) TRANS-RXN-99 :gene-match H+[periplasmic space] + choline[periplasmic space] =H+[cytosol] + choline[cytosol] 2 CHLtex choline transport via diffusion ( extracellular to periplasm ) chol[e] <==> chol[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da chol 0 CHORM chorismate mutase [c] : chor --> pphn ( B2599 OR B2600 ) ( CHORISMATEMUT-RXN ) CHORISMATEMUT-RXN :gene-match chorismate = prephenate 2 CHORS chorismate synthase [c] : 3psme --> chor + pi B2329 ( CHORISMATE-SYNTHASE-RXN ) CHORISMATE-SYNTHASE-RXN :gene-match 5-enolpyruvyl-shikimate-3-phosphate -> phosphate + chorismate 3 CHRPL Chorismate pyruvate lyase [c] : chor --> 4hbz + pyr B4039 ( CHORPYRLY-RXN ) CHORPYRLY-RXN :gene-match chorismate -> p-hydroxybenzoate + pyruvate 3 CINNDO Cinnamate dioxygenase [c] : cinnm + h + nadh + o2 --> cenchddd + nad ( B2538 AND B2539 AND B2540 AND B2542 ) HCAMULTI-RXN :gene-match 3-phenylpropionate + NADH + O2 + H+ = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ pppn cinnm 5 CITL Citrate lyase [c] : cit --> ac + oaa ( ( B0615 AND B0616 AND B0617 ) AND B0614 ) ( CITLY-RXN ) CITLY-RXN :gene-match citrate = acetate + oxaloacetate 3 CITt7pp Citrate transport via succinate antiport ( periplasm ) cit[p] + succ[c] --> cit[c] + succ[p] B0612 ( TRANS-RXN-201 ) TRANS-RXN-201 :gene-match succinate[cytosol] + citrate[periplasmic space] =citrate[cytosol] + succinate[periplasmic space] 2 CITtex citrate transport via diffusion ( extracellular to periplasm ) cit[e] <==> cit[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cit 0 CLPNS120pp "cardiolipin synthase ( periplasmic, n-C12:0 )" [p] : ( 2 ) pg120 <==> clpn120 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 clpn120, pg120 1 CLPNS140pp "cardiolipin synthase ( periplasmic, n-C14:0 )" [p] : ( 2 ) pg140 <==> clpn140 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 clpn140, pg140 1 CLPNS141pp "cardiolipin synthase ( periplasmic, n-C14:1 )" [p] : ( 2 ) pg141 <==> clpn141 + glyc ( B0789 OR B1249 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 clpn141, pg141 1 CLPNS160pp "cardiolipin synthase ( periplasmic, n-C16:0 )" [p] : ( 2 ) pg160 <==> clpn160 + glyc ( B0789 OR B1249 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 pg160, clpn160 1 CLPNS161pp "cardiolipin synthase ( periplasmic, n-C16:1 )" [p] : ( 2 ) pg161 <==> clpn161 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 pg161, clpn161 1 CLPNS180pp "cardiolipin synthase ( periplasmic, n-C18:0 )" [p] : ( 2 ) pg180 <==> clpn180 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 pg180, clpn180 1 CLPNS181pp "cardiolipin synthase ( periplasmic, n-C18:1 )" [p] : ( 2 ) pg181 <==> clpn181 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol 3 CLt3_2pp chloride transport out via proton antiport ( 2:1 ) ( periplasm ) ( 2 ) cl[p] + h[c] --> ( 2 ) cl[c] + h[p] ( B0155 OR B1592 ) ( RXN0-2501 ) RXN0-2501 :gene-match chloride[periplasmic space] + H+[cytosol] =chloride[cytosol] + H+[periplasmic space] 2 CLtex chloride ( Cl-1 ) transport via diffusion ( extracellular to periplasm ) cl[e] <==> cl[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cl 0 CMPtex CMP transport via diffusion ( extracellular to periplasm ) cmp[e] <==> cmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cmp 0 CO2tex CO2 transport via diffusion ( extracellular to periplasm ) co2[e] <==> co2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da co2 0 COBALT2t3pp cobalt ( Co+2 ) transport out via proton antiport ( periplasm ) cobalt2[c] + h[p] --> cobalt2[p] + h[c] ( B3915 OR B0752 ) ( TRANS-RXN-141A ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 cobalt2 1 COBALT2tex cobalt ( Co+2 ) transport via diffusion ( extracellular to periplasm ) cobalt2[e] <==> cobalt2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cobalt2 0 COBALT2tpp cobalt transport in via permease ( no H+ ) cobalt2[p] --> cobalt2[c] ( B3040 OR B3816 ) ( TRANS-RXN-141A ) TRANS-RXN-141A :gene-match Co2+[periplasmic space] =Co2+[cytosol] 1 COLIPAabcpp core oligosaccharide lipid A transport via ABC system ( periplasm ) atp[c] + colipa[c] + h2o[c] --> adp[c] + colipa[p] + h[c] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, colipa 4 CPGNabcpp coprogen transport via ABC system ( periplasm ) atp[c] + cpgn[p] + h2o[c] --> adp[c] + cpgn[c] + h[c] + pi[c] ( B0153 AND B0151 AND B0152 ) ABC-11-RXN :gene-match ATP + iron (III) hydroxamate complex[periplasmic space] + H2O =ADP + phosphate + iron (III) hydroxamate complex[cytosol] fe3hox h, cpgn 4 CPGNtonex Coprogen transport via ton system ( extracellular ) cpgn[e] + h[p] --> cpgn[p] + h[c] ( B1102 AND ( B1252 AND B3005 AND B3006 ) ) ( RXN0-1702 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-1702 :gene-match ferric coprogen[extracellular space] =ferric coprogen[periplasmic space] h 1 CPPPGO coproporphyrinogen oxidase ( O2 required ) [c] : cpppg3 + ( 2 ) h + o2 --> ( 2 ) co2 + ( 2 ) h2o + pppg9 B2436 ( RXN0-1461 ) RXN0-1461 :gene-match coproporphyrinogen III + O2 + 2 H+ = protoporphyrinogen IX + 2 CO2 + 2 H2O 6 CPPPGO2 Oxygen Independent coproporphyrinogen-III oxidase [c] : ( 2 ) amet + cpppg3 --> ( 2 ) co2 + ( 2 ) dad-5 + ( 2 ) met-L + pppg9 B3867 ( HEMN-RXN ) HEMN-RXN :gene-match coproporphyrinogen III + 2 S-adenosyl-L-methionine = protoporphyrinogen IX + 2 CO2 + 2 L-methionine + 2 5'-deoxyadenosine 6 CRNabcpp L-carnitine transport via ABC system ( periplasm ) atp[c] + crn[p] + h2o[c] --> adp[c] + crn[c] + h[c] + pi[c] ( B2677 AND B2678 AND B2679 ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] pro-L h, crn 4 CRNBTCT gamma-butyrobetainyl-CoA: carnitine CoA transferase [c] : bbtcoa + crn <==> crncoa + gbbtn B0038 ( RXN0-3601 ) RXN0-3601 :gene-match L-carnitine + gamma-butyrobetainyl-CoA = L-carnitinyl-CoA + gamma-butyrobetaine 4 CRNCAL2 Carnitine-CoA Ligase [c] : atp + coa + crn --> adp + crncoa + pi B0037 LCARNCOALIG-RXN :gene-match coenzyme A + L-carnitine = L-carnitinyl-CoA + H2O h2o pi, atp, adp 3 CRNCAR carnitine-CoA racemase [c] : crncoa <==> crnDcoa B0036 ( CARNCOARACE-RXN ) CARNCOARACE-RXN :gene-match D-carnitinyl-CoA = L-carnitinyl-CoA 2 CRNCBCT crotonobetainyl-CoA: carnitine CoA transferase [c] : crn + ctbtcoa <==> crncoa + ctbt B0038 RXN0-3601 :gene-match L-carnitine + gamma-butyrobetainyl-CoA = L-carnitinyl-CoA + gamma-butyrobetaine gbbtn, bbtcoa ctbtcoa, ctbt 2 CRNCDH Carnityl-CoA dehydratse [c] : crncoa <==> ctbtcoa + h2o B0036 ( RXN0-3561 ) RXN0-3561 :gene-match L-carnitinyl-CoA = crotonobetainyl-CoA + H2O 3 CRNDabcpp D-carnitine transport via ABC system ( periplasm ) atp[c] + crn-D[p] + h2o[c] --> adp[c] + crn-D[c] + h[c] + pi[c] ( B2677 AND B2678 AND B2679 ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] pro-L h, crn-D 4 CRNDCAL2 D-Carnitine-CoA Ligase [c] : atp + coa + crn-D --> adp + crnDcoa + pi B0037 DCARNCOALIG-RXN :gene-match coenzyme A + D-carnitine = D-carnitinyl-CoA + H2O h2o pi, atp, adp 3 CRNDt2rpp D-carnitine outward transport ( H+ antiport ) crn-D[p] + h[p] <==> crn-D[c] + h[c] B4111 TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] pro-L crn-D 1 CRNt2rpp L-carnitine outward transport ( H+ antiport ) crn[p] + h[p] <==> crn[c] + h[c] B4111 TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] pro-L crn 1 CRNt7pp Carnitine/butyrobetaine antiporter ( periplasm ) crn[p] + gbbtn[c] --> crn[c] + gbbtn[p] B0040 ( TRANS-RXN-100 ) TRANS-RXN-100 :gene-match gamma-butyrobetaine[cytosol] + L-carnitine[periplasmic space] =gamma-butyrobetaine[periplasmic space] + L-carnitine[cytosol] 2 CRNt8pp L-carnitine/D-carnitine antiporter ( periplasm ) crn[p] + crn-D[c] --> crn[c] + crn-D[p] B0040 TRANS-RXN-100 :gene-match gamma-butyrobetaine[cytosol] + L-carnitine[periplasmic space] =gamma-butyrobetaine[periplasmic space] + L-carnitine[cytosol] gbbtn crn-D 1 CRNtex L-carnitine transport via diffusion ( extracellular to periplasm ) crn[e] <==> crn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da crn 0 CS citrate synthase [c] : accoa + h2o + oaa --> cit + coa + h B0720 ( CITSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) CITSYN-RXN :gene-match oxaloacetate + acetyl-CoA + H2O = citrate + coenzyme A h 5 CSND Cytosine deaminase [c] : csn + h + h2o --> nh4 + ura B0337 ( CYTDEAM-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) CYTDEAM-RXN :gene-match H2O + cytosine -> ammonia + uracil AMMONIA h, nh4 3 CSNt2pp cytosine transport in via proton symport ( periplasm ) csn[p] + h[p] --> csn[c] + h[c] B0336 ( TRANS-RXN-116 ) TRANS-RXN-116 :gene-match H+[periplasmic space] + cytosine[periplasmic space] =H+[cytosol] + cytosine[cytosol] 2 CSNtex cytosine transport via diffusion ( extracellular to periplasm ) csn[e] <==> csn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da csn 0 CTBTabcpp crotonobetaine transport via ABC system ( periplasm ) atp[c] + ctbt[p] + h2o[c] --> adp[c] + ctbt[c] + h[c] + pi[c] ( B2677 AND B2678 AND B2679 ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] pro-L h, ctbt 4 CTBTCAL2 Crotonobetaine-CoA Ligase [c] : atp + coa + ctbt --> adp + ctbtcoa + pi B0037 CROTCOALIG-RXN :gene-match coenzyme A + crotono-betaine = crotonobetainyl-CoA + H2O h2o pi, atp, adp 3 CTBTt2rpp cronobetaine outward transport ( H+ antiport ) ctbt[p] + h[p] <==> ctbt[c] + h[c] B4111 TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] pro-L ctbt 1 CTPS2 CTP synthase ( glutamine ) [c] : atp + gln-L + h2o + utp --> adp + ctp + glu-L + ( 2 ) h + pi B2780 CTPSYN-RXN :gene-match ATP + UTP + ammonia -> ADP + phosphate + CTP AMMONIA h, h2o, glu-L, gln-L 5 CU1Opp Cuprous Oxidase ( Cu+1 ) [p] : ( 4 ) cu + ( 4 ) h + o2 --> ( 4 ) cu2 + ( 2 ) h2o B0123 RXN0-2945 :gene-match 4 Cu+ + 4 H+ + O2 -> 4 Cu2+ + 2 H2O 5 CU2tex copper ( Cu+2 ) transport via diffusion ( extracellular to periplasm ) cu2[e] <==> cu2[p] ( B2215 OR B0241 OR B0929 OR B1377 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cu2 0 CU2tpp copper transport in via permease ( no H+ ) cu2[p] --> cu2[c] B3040 RXN0-14 :gene-match Cu2+[periplasmic space] =Cu2+[cytoplasm] 1 CUt3 copper transport out via proton antiport cu[c] + h[e] --> cu[e] + h[c] ( B0572 AND B0573 AND B0574 AND B0575 ) TRANS-RXN-90 :gene-match H+[periplasmic space] =H+[cytosol] cu 1 CUtex copper ( Cu+1 ) transport via diffusion ( extracellular to periplasm ) cu[e] <==> cu[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cu 0 CYANST Cyanide sulfurtransferase [c] : cyan + tsul --> h + so3 + tcynt B3425 ( THIOSULFATE-SULFURTRANSFERASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) THIOSULFATE-SULFURTRANSFERASE-RXN :gene-match hydrogen cyanide + thiosulfate = thiocyanate + sulfite h 4 CYANSTpp Cyanide sulfurtransferase ( periplasmic ) [p] : cyan + tsul --> h + so3 + tcynt B1308 THIOSULFATE-SULFURTRANSFERASE-RXN :gene-match hydrogen cyanide + thiosulfate = thiocyanate + sulfite h 4 CYANtex Cyanide transport via diffusion ( extracellular to periplasm ) cyan[e] <==> cyan[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cyan 0 CYNTAH Cyanate aminohydrolase [c] : cynt + ( 3 ) h + hco3 --> ( 2 ) co2 + nh4 B0340 4.3.99.1-RXN :gene-match HCO3- + cyanate = carbamate + CO2 CARBAMATE h, nh4 3 CYNTt2pp Cyanate transport via proton symport ( periplasm ) cynt[p] + h[p] --> cynt[c] + h[c] B0341 ( TRANS-RXN-14 ) TRANS-RXN-14 :gene-match H+[periplasmic space] + cyanate[periplasmic space] =H+[cytosol] + cyanate[cytosol] 2 CYNTtex Cyanate transport via diffusion ( extracellular to periplasm ) cynt[e] <==> cynt[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cynt 0 CYSabc2pp L-cysteine export via ABC system ( cytoplasm to periplasm ) atp[c] + cys-L[c] + h2o[c] --> adp[c] + cys-L[p] + h[c] + pi[c] ( B0886 AND B0887 ) RXN0-3 :gene-match L-cysteine[cytoplasm] + ATP + H2O =L-cysteine[periplasmic space] + ADP + phosphate h 5 CYSDDS D-cysteine desulfhydrase [c] : cys-D + h2o --> h2s + nh4 + pyr B1919 ( DCYSDESULF-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) DCYSDESULF-RXN :gene-match D-cysteine + H2O = pyruvate + hydrogen sulfide + ammonia AMMONIA nh4 4 CYSDS Cysteine Desulfhydrase [c] : cys-L + h2o --> h2s + nh4 + pyr ( B3708 OR B3008 ) ( LCYSDESULF-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) LCYSDESULF-RXN :gene-match L-cysteine + H2O = pyruvate + ammonia + hydrogen sulfide AMMONIA nh4 4 CYSDtex D-cysteine transport via diffusion ( extracellular to periplasm ) cys-D[e] <==> cys-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cys-D 0 CYSS cysteine synthase [c] : acser + h2s --> ac + cys-L + h ( B2414 OR B2421 ) ( ACSERLY-RXN ) ( ( RIGHT REMOVE PROTON ) ) ACSERLY-RXN :gene-match O-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate h 4 CYSSADS L-cysteine sulfinic acid desulfurase [c] : 3sala + ( 2 ) h --> ala-L + so2 B2810 ( RXN0-279 ) ( ( LEFT REMOVE PROTON ) ) RXN0-279 :gene-match 3-sulfinoalanine = L-alanine + sulphur dioxide h 3 CYStex L-cysteine transport via diffusion ( extracellular to periplasm ) cys-L[e] <==> cys-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cys-L 0 CYSTL cystathionine b-lyase [c] : cyst-L + h2o --> hcys-L + nh4 + pyr ( B1622 OR B3008 ) ( CYSTATHIONINE-BETA-LYASE-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) CYSTATHIONINE-BETA-LYASE-RXN :gene-match cystathionine + H2O = pyruvate + ammonia + L-homocysteine AMMONIA nh4 4 CYStpp L-cysteine export via facilitated transport cys-L[c] --> cys-L[p] ( B2578 OR B1533 ) ( RXN0-1924 ) RXN0-1924 :gene-match L-cysteine[cytosol] =L-cysteine[periplasmic space] 1 CYSTRS Cysteinyl-tRNA synthetase [c] : atp + cys-L + trnacys --> amp + cystrna + ppi B0526 ( CYSTEINE--TRNA-LIGASE-RXN ) CYSTEINE--TRNA-LIGASE-RXN :gene-match tRNAcys + L-cysteine + ATP -> L-cysteinyl-tRNAcys + diphosphate + AMP 6 CYTBD2pp cytochrome oxidase bd ( menaquinol-8: 2 protons ) ( periplasm ) ( 2 ) h[c] + mql8[c] + ( 0.5 ) o2[c] --> ( 2 ) h[p] + h2o[c] + mqn8[c] ( B0978 AND B0979 ) CYT-UBIQUINOL-OXID-RXN :gene-match ubiquinol-8 + O2 = ubiquinone-8 + 2 H2O q8, q8h2 mqn8, h, mql8 2 CYTBDpp cytochrome oxidase bd ( ubiquinol-8: 2 protons ) ( periplasm ) ( 2 ) h[c] + ( 0.5 ) o2[c] + q8h2[c] --> ( 2 ) h[p] + h2o[c] + q8[c] ( ( B0978 AND B0979 ) OR ( B0733 AND B0734 ) ) ( CYT-UBIQUINOL-OXID-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) CYT-UBIQUINOL-OXID-RXN :gene-match ubiquinol-8 + O2 = ubiquinone-8 + 2 H2O h 4 CYTBO3_4pp cytochrome oxidase bo3 ( ubiquinol-8: 4 protons ) ( periplasm ) ( 4 ) h[c] + ( 0.5 ) o2[c] + q8h2[c] --> ( 4 ) h[p] + h2o[c] + q8[c] ( B0429 AND B0430 AND B0431 AND B0432 ) ( CYT-UBIQUINOL-OXID-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) CYT-UBIQUINOL-OXID-RXN :gene-match ubiquinol-8 + O2 = ubiquinone-8 + 2 H2O h 4 CYTD cytidine deaminase [c] : cytd + h + h2o --> nh4 + uri B2143 ( CYTIDEAM2-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) CYTIDEAM2-RXN :gene-match H2O + cytidine -> ammonia + uridine AMMONIA h, nh4 3 CYTDH Cytidine hydrolase [c] : cytd + h2o --> csn + rib-D ( B2162 OR B0651 OR B0030 ) ( RXN0-361 ) RXN0-361 :gene-match cytidine + H2O -> cytosine + D-ribose 4 CYTDK2 cytidine kinase ( GTP ) [c] : cytd + gtp --> cmp + gdp + h B2066 ( CYTIDINEKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) CYTIDINEKIN-RXN :gene-match cytidine + GTP = CMP + GDP h 4 CYTDt2pp cytidine transport in via proton symport ( periplasm ) cytd[p] + h[p] --> cytd[c] + h[c] ( B2393 OR B2964 ) ( TRANS-RXN-108B ) TRANS-RXN-108B :gene-match H+[periplasmic space] + cytidine[periplasmic space] =H+[cytosol] + cytidine[cytosol] 2 CYTDt2rpp "cytidine transport in via proton symport, reversible ( periplasm )" cytd[p] + h[p] <==> cytd[c] + h[c] B2406 ( TRANS-RXN-108B ) TRANS-RXN-31 :gene-match H+[periplasmic space] + xanthosine[periplasmic space] =H+[cytosol] + xanthosine[cytosol] xtsn cytd 1 CYTDtex cytidine transport via diffusion ( extracellular to periplasm ) cytd[e] <==> cytd[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da cytd 0 CYTK1 cytidylate kinase ( CMP ) [c] : atp + cmp <==> adp + cdp B0910 ( CMPKI-RXN ) CMPKI-RXN :gene-match CMP + ATP = CDP + ADP 4 CYTK2 cytidylate kinase ( dCMP ) [c] : atp + dcmp <==> adp + dcdp B0910 ( RXN-7913 ) ( :METACYC ) CMPKI-RXN :gene-match CMP + ATP = CDP + ADP cdp, cmp dcmp, dcdp 2 DAAD D-Amino acid dehydrogenase [c] : ala-D + fad + h2o --> fadh2 + nh4 + pyr B1189 DALADEHYDROG-RXN :gene-match D-alanine + H2O = pyruvate + ammonia AMMONIA nh4, fadh2, fad 3 DADA Deoxyadenosine deaminase [c] : dad-2 + h + h2o --> din + nh4 B1623 ( ADDALT-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ADDALT-RXN :gene-match ammonia + deoxyinosine = H2O + deoxyadenosine AMMONIA h, nh4 3 DADK deoxyadenylate kinase [c] : atp + damp <==> adp + dadp B0474 ( |( DEOXY )ADENYLATE-KINASE-RXN| ) ( :METACYC ) ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP amp damp, dadp 2 DADNt2pp deoxyadenosine transport in via proton symport ( periplasm ) dad-2[p] + h[p] --> dad-2[c] + h[c] ( B2393 OR B2964 ) ( TRANS-RXN-108C ) TRANS-RXN-108C :gene-match H+[periplasmic space] + deoxyadenosine[periplasmic space] =H+[cytosol] + deoxyadenosine[cytosol] 2 DAGK120 diacylglycerol kinase ( n-C12:0 ) [c] : 12dgr120 + atp --> adp + h + pa120 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate 12dgr181, pa181 h, 12dgr120, pa120 2 DAGK140 diacylglycerol kinase ( n-C14:0 ) [c] : 12dgr140 + atp --> adp + h + pa140 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate 12dgr181, pa181 12dgr140, pa140, h 2 DAGK141 diacylglycerol kinase ( n-C14:1 ) [c] : 12dgr141 + atp --> adp + h + pa141 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate 12dgr181, pa181 12dgr141, h, pa141 2 DAGK160 diacylglycerol kinase ( n-C16:0 ) [c] : 12dgr160 + atp --> adp + h + pa160 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate 12dgr181, pa181 h, 12dgr160, pa160 2 DAGK161 diacylglycerol kinase ( n-C16:1 ) [c] : 12dgr161 + atp --> adp + h + pa161 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate 12dgr181, pa181 h, 12dgr161, pa161 2 DAGK180 diacylglycerol kinase ( n-C18:0 ) [c] : 12dgr180 + atp --> adp + h + pa180 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate 12dgr181, pa181 h, 12dgr180, pa180 2 DAGK181 diacylglycerol kinase ( n-C18:1 ) [c] : 12dgr181 + atp --> adp + h + pa181 B4042 ( DIACYLGLYKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIACYLGLYKIN-RXN :gene-match ATP + a 1,2-diacylglycerol = ADP + an L-phosphatidate h 4 DALAt2pp D-alanine transport in via proton symport ( periplasm ) ala-D[p] + h[p] --> ala-D[c] + h[c] B4208 ( TRANS-RXN-62A ) TRANS-RXN-62A :gene-match H+[periplasmic space] + D-alanine[periplasmic space] =H+[cytosol] + D-alanine[cytosol] 2 DALAtex D-Alanine transport via diffusion ( extracellular to periplasm ) ala-D[e] <==> ala-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ala-D 0 DAMPtex dAMP transport via diffusion ( extracellular to periplasm ) damp[e] <==> damp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da damp 0 DAPAL "2,3-diaminopropionate amonnia lyase" [c] : 23dappa + h2o --> ( 2 ) nh4 + pyr B2871 ( 4.3.1.15-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) 4.3.1.15-RXN :gene-match 2,3-diaminopropionate + H2O -> 2 ammonia + pyruvate AMMONIA nh4 3 DAPDC diaminopimelate decarboxylase [c] : 26dap-M + h --> co2 + lys-L B2838 ( DIAMINOPIMDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) DIAMINOPIMDECARB-RXN :gene-match meso-diaminopimelate = L-lysine + CO2 h 3 DAPE diaminopimelate epimerase [c] : 26dap-LL <==> 26dap-M B3809 ( DIAMINOPIMEPIM-RXN ) DIAMINOPIMEPIM-RXN :gene-match L,L-diaminopimelate = meso-diaminopimelate 2 DAPtex "1,5-Diaminopentane transport via diffusion ( extracellular to periplasm )" 15dap[e] <==> 15dap[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 15dap 0 DASYN120 CDP-diacylglycerol synthetase ( n-C12:0 ) [c] : ctp + h + pa120 --> cdpdddecg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol cdpdtdecg, pa181 h, cdpdddecg, pa120 2 DASYN140 CDP-diacylglycerol synthetase ( n-C14:0 ) [c] : ctp + h + pa140 --> cdpdtdecg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol pa181 h, pa140 3 DASYN141 CDP-diacylglycerol synthetase ( n-C14:1 ) [c] : ctp + h + pa141 --> cdpdtdec7eg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol cdpdtdecg, pa181 h, pa141, cdpdtdec7eg 2 DASYN160 CDP-diacylglycerol synthetase ( n-C16:0 ) [c] : ctp + h + pa160 --> cdpdhdecg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol cdpdtdecg, pa181 h, pa160, cdpdhdecg 2 DASYN161 CDP-diacylglycerol synthetase ( n-C16:1 ) [c] : ctp + h + pa161 --> cdpdhdec9eg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol cdpdtdecg, pa181 h, pa161, cdpdhdec9eg 2 DASYN180 CDP-diacylglycerol synthetase ( n-C18:0 ) [c] : ctp + h + pa180 --> cdpdodecg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol cdpdtdecg, pa181 h, cdpdodecg, pa180 2 DASYN181 CDP-diacylglycerol synthetase ( n-C18:1 ) [c] : ctp + h + pa181 --> cdpdodec11eg + ppi B0175 ( CDPDIGLYSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) CDPDIGLYSYN-RXN :gene-match CTP + an L-phosphatidate = diphosphate + a CDP-diacylglycerol cdpdtdecg h, cdpdodec11eg 3 DB4PS "3,4-Dihydroxy-2-butanone-4-phosphate synthase" [c] : ru5p-D --> db4p + for + h B3041 ( DIOHBUTANONEPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIOHBUTANONEPSYN-RXN :gene-match D-ribulose-5-phosphate = 3,4-dihydroxy-2-butanone-4-P + formate h 3 DBTS dethiobiotin synthase [c] : atp + co2 + dann --> adp + dtbt + ( 3 ) h + pi B0778 ( DETHIOBIOTIN-SYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DETHIOBIOTIN-SYN-RXN :gene-match CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP h 6 DCAtex Decanoate transport via diffusion ( extracellular to periplasm ) dca[e] <==> dca[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dca 0 DCMPtex dCMP transport via diffusion ( extracellular to periplasm ) dcmp[e] <==> dcmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dcmp 0 DCTPD dCTP deaminase [c] : dctp + h + h2o --> dutp + nh4 B2065 ( DCTP-DEAM-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) DCTP-DEAM-RXN :gene-match H2O + dCTP -> ammonia + dUTP AMMONIA h, nh4 3 DCYTD deoxycytidine deaminase [c] : dcyt + h + h2o --> duri + nh4 B2143 ( CYTIDEAM-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) CYTIDEAM-RXN :gene-match H2O + deoxycytidine -> ammonia + deoxyuridine AMMONIA h, nh4 3 DCYTt2pp deoxycytidine transport in via proton symport ( periplasm ) dcyt[p] + h[p] --> dcyt[c] + h[c] ( B2393 OR B2964 ) ( TRANS-RXN-108D ) TRANS-RXN-108D :gene-match H+[periplasmic space] + deoxycytidine[periplasmic space] =H+[cytosol] + deoxycytidine[cytosol] 2 DDCAtexi Fatty acid ( dodecanoate ) transport via facilitated irreversible diffusion ( extracellular to periplasm ) ddca[e] --> ddca[p] B2344 ( RXN0-1802 ) ( :EXPANDED-RXN-MATCH ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid ddca 0 DDGALK 2-dehydro-3-deoxygalactonokinase [c] : 2dh3dgal + atp --> 2dh3dgal6p + adp + h B3693 ( DEHYDDEOXGALACTKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DEHYDDEOXGALACTKIN-RXN :gene-match 2-dehydro-3-deoxy-D-galactonate + ATP = 2-dehydro-3-deoxy-D-galactonate-6-phosphate + ADP h 4 DDGLCNt2rpp "2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible ( periplasm )" 2ddglcn[p] + h[p] <==> 2ddglcn[c] + h[c] B3909 ( TRANS-RXN-113 ) TRANS-RXN-113 :gene-match H+[periplasmic space] + 2-dehydro-3-deoxy-D-gluconate[periplasmic space] =H+[cytosol] + 2-dehydro-3-deoxy-D-gluconate[cytosol] 2 DDGLCNtex 2-dehydro-3-deoxy-D-gluconate transport via diffusion ( extracellular to periplasm ) 2ddglcn[e] <==> 2ddglcn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 2ddglcn 0 DDGLK 2-dehydro-3-deoxygluconokinase [c] : 2ddglcn + atp --> 2ddg6p + adp + h B3526 ( DEOXYGLUCONOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DEOXYGLUCONOKIN-RXN :gene-match 2-dehydro-3-deoxy-D-gluconate + ATP = 2-keto-3-deoxy-6-phospho-gluconate + ADP h 4 DDPA 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase [c] : e4p + h2o + pep --> 2dda7p + pi ( B2601 OR B0754 OR B1704 ) ( DAHPSYN-RXN ) DAHPSYN-RXN :gene-match phosphoenolpyruvate + D-erythrose-4-phosphate + H2O = 3-deoxy-D-arabino-heptulosonate-7-phosphate + phosphate 5 DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [c] : 2dh3dgal6p <==> g3p + pyr B4477 ( DEHYDDEOXPHOSGALACT-ALDOL-RXN ) DEHYDDEOXPHOSGALACT-ALDOL-RXN :gene-match 2-dehydro-3-deoxy-D-galactonate-6-phosphate = D-glyceraldehyde-3-phosphate + pyruvate 3 DGK1 deoxyguanylate kinase ( dGMP:ATP ) [c] : atp + dgmp <==> adp + dgdp B3648 ( GMKALT-RXN ) GMKALT-RXN :gene-match ATP + dGMP = ADP + dGDP 4 DGMPtex dGMP transport via diffusion ( extracellular to periplasm ) dgmp[e] <==> dgmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dgmp 0 DGSNt2pp deoxyguanosine transport in via proton symport ( periplasm ) dgsn[p] + h[p] --> dgsn[c] + h[c] B2964 ( TRANS-RXN-108 ) ( :EXPANDED-RXN-MATCH ) TRANS-RXN-108 :gene-match H+[periplasmic space] + a nucleoside[periplasmic space] =H+[cytosol] + a nucleoside[cytosol] Nucleosides dgsn 1 DGSNtex deoxyguanosine transport via diffusion ( extracellular to periplasm ) dgsn[e] <==> dgsn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dgsn 0 DHAD1 "dihydroxy-acid dehydratase ( 2,3-dihydroxy-3-methylbutanoate )" [c] : 23dhmb --> 3mob + h2o B3771 ( DIHYDROXYISOVALDEHYDRAT-RXN ) DIHYDROXYISOVALDEHYDRAT-RXN :gene-match 2,3-dihydroxy-isovalerate = 2-keto-isovalerate + H2O 3 DHAD2 "Dihydroxy-acid dehydratase ( 2,3-dihydroxy-3-methylpentanoate )" [c] : 23dhmp --> 3mop + h2o B3771 ( DIHYDROXYMETVALDEHYDRAT-RXN ) DIHYDROXYMETVALDEHYDRAT-RXN :gene-match 2,3-dihydroxy-3-methylvalerate = 2-keto-3-methyl-valerate + H2O 3 DHAPT Dihydroxyacetone phosphotransferase [c] : dha + pep --> dhap + pyr ( B1200 AND B1199 AND B1198 AND B2415 AND B2416 ) ( 2.7.1.121-RXN ) 2.7.1.121-RXN :gene-match dihydroxy-acetone + phosphoenolpyruvate -> dihydroxy-acetone-phosphate + pyruvate 4 DHAtex Dihydroxyacetone transport via diffusion ( extracellular to periplasm ) dha[e] <==> dha[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dha 0 DHBD "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" [c] : 23ddhb + nad <==> 23dhb + h + nadh B0596 ( DHBDEHYD-RXN ) ( ( RIGHT REMOVE PROTON ) ) DHBDEHYD-RXN :gene-match NAD+ + 2,3-dihydro-2,3-dihydroxybenzoate -> NADH + 2,3-dihydroxybenzoate h 4 DHBS "2,3-dihydroxybenzoate adenylate synthase" [c] : 23dhb + atp + h --> 23dhba + ppi B0594 ( DHBAMPLIG-RXN ) ( ( LEFT REMOVE PROTON ) ) DHBAMPLIG-RXN :gene-match ATP + 2,3-dihydroxybenzoate = diphosphate + (2,3-dihydroxybenzoyl)adenylate h 4 DHCIND "2,3-dihydroxycinnamate dehydrogenase" [c] : cenchddd + nad --> dhcinnm + h + nadh B2541 ( :UNMAPPED-CPDS ) PHENPRODIOLDEHYDROG-RXN :gene-match cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ = 3-(2,3-dihydroxyphenyl)propionate + NADH dhpppn h, dhcinnm 3 DHCINDO "2,3-dihydroxycinnamate 1,2-dioxygenase" [c] : dhcinnm + o2 --> h + hkntd B0348 ( :UNMAPPED-CPDS ) 1.13.11.16-RXN :gene-match 3-(2,3-dihydroxyphenyl)propionate + O2 = 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate hkndd, dhpppn h, dhcinnm, hkntd 1 DHDPRy dihydrodipicolinate reductase ( NADPH ) [c] : 23dhdp + h + nadph --> nadp + thdp B0031 ( DIHYDROPICRED-RXN ) ( :EXPANDED-RXN-MATCH ) DIHYDROPICRED-RXN :gene-match tetrahydrodipicolinate + NAD(P)+ -> L-2,3-dihydrodipicolinate + NAD(P)H + H+ NAD(P), NAD(P)H nadph, nadp 3 DHDPS dihydrodipicolinate synthase [c] : aspsa + pyr --> 23dhdp + h + ( 2 ) h2o B2478 ( DIHYDRODIPICSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIHYDRODIPICSYN-RXN :gene-match pyruvate + L-aspartate-semialdehyde = 2 H2O + L-2,3-dihydrodipicolinate h 4 DHFR dihydrofolate reductase [c] : dhf + h + nadph <==> nadp + thf ( B1606 OR B0048 ) ( DIHYDROFOLATEREDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) DIHYDROFOLATEREDUCT-RXN :gene-match NADP+ + tetrahydrofolate = NADPH + 7,8-dihydrofolate h 4 DHFS dihydrofolate synthase [c] : atp + dhpt + glu-L --> adp + dhf + h + pi B2315 ( DIHYDROFOLATESYNTH-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIHYDROFOLATESYNTH-RXN :gene-match L-glutamate + 7,8-dihydropteroate + ATP = 7,8-dihydrofolate + phosphate + ADP h 6 DHNAOT4 "1,4-dihydroxy-2-naphthoate octaprenyltransferase" [c] : dhna + h + octdp --> 2dmmql8 + co2 + ppi B3930 ( DMK-RXN ) ( ( LEFT REMOVE PROTON ) ) DMK-RXN :gene-match octaprenyl diphosphate + 1,4-dihydroxy-2-naphthoate = demethylmenaquinone-8 + diphosphate + CO2 h 5 DHNPA2 dihydroneopterin aldolase [c] : dhnpt --> 6hmhpt + gcald B3058 ( H2NEOPTERINALDOL-RXN ) H2NEOPTERINALDOL-RXN :gene-match dihydro-neo-pterin -> glycolaldehyde + 6-hydroxymethyl-dihydropterin 3 DHORD2 dihydoorotic acid dehydrogenase ( quinone8 ) [c] : dhor-S + q8 --> orot + q8h2 B0945 DIHYDROOROTOX-RXN :gene-match O2 + dihydroorotate = H2O2 + orotate o2, h2o2 q8, q8h2 2 DHORD5 dihydroorotic acid ( menaquinone-8 ) [c] : dhor-S + mqn8 --> mql8 + orot B0945 DIHYDROOROTOX-RXN :gene-match O2 + dihydroorotate = H2O2 + orotate o2, h2o2 mqn8, mql8 2 DHORTS dihydroorotase [c] : dhor-S + h2o <==> cbasp + h B1062 ( DIHYDROOROT-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIHYDROOROT-RXN :gene-match dihydroorotate + H2O = carbamoyl-L-aspartate h 3 DHPPD "2,3-dihydroxyphenylpropionate dehydrogenase" [c] : cechddd + nad --> dhpppn + h + nadh B2541 ( PHENPRODIOLDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHENPRODIOLDEHYDROG-RXN :gene-match cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ = 3-(2,3-dihydroxyphenyl)propionate + NADH cenchddd h, cechddd 3 DHPPDA2 diaminohydroxyphosphoribosylaminopryrimidine deaminase ( 25drapp ) [c] : 25drapp + h + h2o --> 5apru + nh4 B0414 ( RIBOFLAVINSYNDEAM-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) RIBOFLAVINSYNDEAM-RXN :gene-match H2O + 2,5-diamino-6-(ribosylamino)-4-(3H)-pyrimidinone 5'-phosphate = 5-amino-6-(5'-phosphoribosylamino)uracil + ammonia AMMONIA nh4, h 3 DHPS2 dihydropteroate synthase [c] : 4abz + 6hmhptpp --> dhpt + ppi B3177 ( H2PTEROATESYNTH-RXN ) H2PTEROATESYNTH-RXN :gene-match p-aminobenzoate + 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate -> 7,8-dihydropteroate + diphosphate 4 DHPTPE dihydroneopterin triphosphate 2'-epimerase [c] : ahdt <==> dhmptp B2303 ( H2NTPEPIM-RXN ) H2NTPEPIM-RXN :gene-match 7,8-dihydroneopterin 3'-triphosphate = dihydromonapterin-triphosphate 2 DHQD 3-dehydroquinate dehydratase [c] : 3dhq <==> 3dhsk + h2o B1693 ( 3-DEHYDROQUINATE-DEHYDRATASE-RXN ) 3-DEHYDROQUINATE-DEHYDRATASE-RXN :gene-match 3-dehydroquinate = H2O + 3-dehydro-shikimate 3 DHQS 3-dehydroquinate synthase [c] : 2dda7p --> 3dhq + pi B3389 ( 3-DEHYDROQUINATE-SYNTHASE-RXN ) 3-DEHYDROQUINATE-SYNTHASE-RXN :gene-match 3-deoxy-D-arabino-heptulosonate-7-phosphate = phosphate + 3-dehydroquinate 3 DIMPtex dIMP transport via diffusion ( extracellular to periplasm ) dimp[e] <==> dimp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dimp 0 DINSt2pp deoxyinosine transport in via proton symport ( periplasm ) din[p] + h[p] --> din[c] + h[c] B2964 ( TRANS-RXN-108E ) TRANS-RXN-108 :gene-match H+[periplasmic space] + a nucleoside[periplasmic space] =H+[cytosol] + a nucleoside[cytosol] Nucleosides din 1 DINStex deoxyinosine transport via diffusion ( extracellular to periplasm ) din[e] <==> din[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da din 0 DKGLCNR1 "2,5-diketo-D-gluconate reductase" [c] : 25dkglcn + h + nadph --> 2dhguln + nadp ( B3012 OR B0207 ) ( 1.1.1.274-RXN ) ( ( LEFT REMOVE PROTON ) ) 1.1.1.274-RXN :gene-match NADPH + 2,5-didehydro-D-gluconate = 2-dehydro-D-gluconate + NADP+ h 4 DKGLCNR2x "2,5-diketo-D-gluconate reductase ( NADH )" [c] : 25dkglcn + h + nadh --> 5dglcn + nad B3553 YIAE1-RXN :gene-match 2,5-didehydro-D-gluconate + NADPH = 5-ketogluconate + NADP+ nadph, nadp h, nadh, nad 2 DKGLCNR2y "2,5-diketo-D-gluconate reductase ( NADPH )" [c] : 25dkglcn + h + nadph --> 5dglcn + nadp B3553 ( YIAE1-RXN ) ( ( LEFT REMOVE PROTON ) ) YIAE1-RXN :gene-match 2,5-didehydro-D-gluconate + NADPH = 5-ketogluconate + NADP+ h 4 D-LACt2pp D-lactate transport via proton symport ( periplasm ) h[p] + lac-D[p] <==> h[c] + lac-D[c] ( B3603 OR B2975 ) TRANS-RXN-105 :gene-match H+[periplasmic space] + glycolate[periplasmic space] =H+[cytosol] + glycolate[cytosol] glyclt lac-D 1 D-LACtex D-lactate transport via diffusion ( extracellular to periplasm ) lac-D[e] <==> lac-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da lac-D 0 DMATT dimethylallyltranstransferase [c] : dmpp + ipdp --> grdp + ppi B0421 ( GPPSYN-RXN ) GPPSYN-RXN :gene-match dimethylallyl-pyrophosphate + delta3-isopentenyl-PP = diphosphate + geranyl-PP 4 DMPPS 1-hydroxy-2-methyl-2-( E )-butenyl 4-diphosphate reductase ( dmpp ) [c] : h + h2mb4p + nadh --> dmpp + h2o + nad B0029 ( RXN0-884 ) ( :EXPANDED-RXN-MATCH ) RXN0-884 :gene-match 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + NAD(P)H + H+ = dimethylallyl-pyrophosphate + NAD(P)+ + H2O NAD(P), NAD(P)H nadh, nad 4 DMQMT 3-Dimethylubiquinonol 3-methyltransferase [c] : 2omhmbl + amet --> ahcys + h + q8h2 B2232 DHHB-METHYLTRANSFER-RXN :gene-match 3-demethylubiquinone-8 + S-adenosyl-L-methionine = ubiquinone-8 + S-adenosyl-L-homocysteine q8 h, q8h2 3 DMSOR1 Dimethyl sulfoxide reductase ( Menaquinol 8 ) [c] : dmso + mql8 --> dms + h2o + mqn8 ( ( B1587 AND B1588 AND B1589 AND B1590 ) OR ( B0894 AND B0895 AND B0896 ) ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 h 5 DMSOR1pp Dimethyl sulfoxide reductase ( Menaquinol 8 ) ( periplasm ) dmso[p] + mql8[c] --> dms[p] + h2o[p] + mqn8[c] ( B1872 AND B1873 ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, h, tmao, Cytochromes-C, tma mqn8, dmso, mql8, dms 1 DMSOR2 Dimethyl sulfoxide reductase ( Demethylmenaquinol 8 ) [c] : 2dmmql8 + dmso --> 2dmmq8 + dms + h2o ( B0894 AND B0895 AND B0896 ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 mqn8, h, mql8 2dmmq8, 2dmmql8 3 DMSOR2pp Dimethyl sulfoxide reductase ( Demethylmenaquinol 8 ) ( periplasm ) 2dmmql8[c] + dmso[p] --> 2dmmq8[c] + dms[p] + h2o[p] ( B1872 AND B1873 ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, h, tmao, Cytochromes-C, tma 2dmmq8, dmso, 2dmmql8, dms 1 DMSOtex Dimethyl sulfoxide transport via diffusion ( extracellular to periplasm ) dmso[e] <==> dmso[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dmso 0 DMStex Dimethyl sulfide transport via diffusion ( extracellular to periplasm ) dms[e] <==> dms[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dms 0 DNTPPA Dihydroneopterin triphosphate pyrophosphatase [c] : ahdt + h2o --> dhpmp + h + ppi ( B1865 OR B0099 ) ( H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN ) ( ( RIGHT REMOVE PROTON ) ) RXN0-385 :gene-match dGTP + H2O = dGMP + diphosphate dgmp, dgtp h, dhpmp, ahdt 2 DOGULNR "2,3 dioxo-L-gulonate reductase" [c] : 23doguln + h + nadh --> 3dhguln + nad B3575 ( RXN0-703 ) ( ( LEFT REMOVE PROTON ) ) RXN0-703 :gene-match 2,3-diketo-L-gulonate + NADH -> 3-keto-L-gulonate + NAD+ h 4 DOPAtex dopamine transport via diffusion ( extracellular to periplasm ) dopa[e] <==> dopa[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dopa 0 DPCOAK dephospho-CoA kinase [c] : atp + dpcoa --> adp + coa + h B0103 ( DEPHOSPHOCOAKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) DEPHOSPHOCOAKIN-RXN :gene-match dephospho-CoA + ATP = coenzyme A + ADP h 4 DPR 2-dehydropantoate 2-reductase [c] : 2dhp + h + nadph --> nadp + pant-R ( B0425 OR B3774 ) ( 2-DEHYDROPANTOATE-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) 2-DEHYDROPANTOATE-REDUCT-RXN :gene-match L-pantoate + NADP+ = 2-dehydropantoate + NADPH h 4 DRPA deoxyribose-phosphate aldolase [c] : 2dr5p --> acald + g3p B4381 ( DEOXYRIBOSE-P-ALD-RXN ) DEOXYRIBOSE-P-ALD-RXN :gene-match deoxyribose-5-phosphate = acetaldehyde + D-glyceraldehyde-3-phosphate 3 DSBAO1 DsbA protein reoxidation reaction ( aerobic ) dsbard[p] + q8[c] --> dsbaox[p] + q8h2[c] ( B3860 AND B1185 ) ( :UNMAPPED-CPDS ) DISULFOXRED-RXN :gene-match a protein with reduced sulfide groups = a protein with oxidized disulfide bonds Protein-Ox-Disulfides, Protein-Red-Disulfides dsbard, q8, q8h2, dsbaox 0 DSBAO2 DsbA protein reoxidation reaction ( anaerobic ) dsbard[p] + mqn8[c] --> dsbaox[p] + mql8[c] ( B3860 AND B1185 ) ( :UNMAPPED-CPDS ) DISULFOXRED-RXN :gene-match a protein with reduced sulfide groups = a protein with oxidized disulfide bonds Protein-Ox-Disulfides, Protein-Red-Disulfides dsbard, mqn8, mql8, dsbaox 0 DSBCGT DsbC:glutathione thiotransferase [p] : dsbcox + ( 2 ) gthrd --> dsbcrd + gthox B2893 ( :UNMAPPED-CPDS ) DISULFOXRED-RXN :gene-match a protein with reduced sulfide groups = a protein with oxidized disulfide bonds Protein-Ox-Disulfides, Protein-Red-Disulfides gthrd, dsbcox, dsbcrd, gthox 0 DSBDR DsbD reductase [c] : dsbdox + trdrd --> dsbdrd + trdox ( ( B4136 AND B2582 ) OR ( B4136 AND B3781 ) ) ( :UNMAPPED-CPDS ) DSBD-RXN :gene-match DsbGoxidized + DsbDreduced = DsbGreduced + DsbDoxidized dsbgox, dsbgrd trdrd, trdox 2 DSBGGT DsbG:glutathione thiotransferase [p] : dsbgox + ( 2 ) gthrd --> dsbgrd + gthox B0604 ( :UNMAPPED-CPDS ) DISULFOXRED-RXN :gene-match a protein with reduced sulfide groups = a protein with oxidized disulfide bonds Protein-Ox-Disulfides, Protein-Red-Disulfides gthrd, dsbgox, dsbgrd, gthox 0 DSERDHr D-serine dehydrogenase [c] : nadp + ser-D <==> 2amsa + h + nadph B1539 RXN0-2201 :gene-match L-serine + NADP+ -> 2-aminomalonate-semialdehyde + NADPH + H+ ser-L ser-D 4 DSERt2pp D-serine transport in via proton symport ( periplasm ) h[p] + ser-D[p] --> h[c] + ser-D[c] B4208 ( RXN0-5130 ) RXN0-5130 :gene-match H+[periplasmic space] + D-serine[periplasmic space] =H+[cytosol] + D-serine[cytosol] 2 DSERtex D-serine transport via diffusion ( extracellular to periplasm ) ser-D[e] <==> ser-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ser-D 0 DTMPK dTMP kinase [c] : atp + dtmp <==> adp + dtdp B1098 ( DTMPKI-RXN ) DTMPKI-RXN :gene-match dTMP + ATP = dTDP + ADP 4 DTMPtex dTMP transport via diffusion ( extracellular to periplasm ) dtmp[e] <==> dtmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dtmp 0 DUMPtex dUMP transport via diffusion ( extracellular to periplasm ) dump[e] <==> dump[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da dump 0 DURIK1 deoxyuridine kinase ( ATP:Deoxyuridine ) [c] : atp + duri --> adp + dump + h B1238 ( DURIDKI-RXN ) ( ( RIGHT REMOVE PROTON ) ) DURIDKI-RXN :gene-match deoxyuridine + ATP -> dUMP + ADP h 4 DURIPP deoxyuridine phosphorylase [c] : duri + pi <==> 2dr1p + ura ( B4382 OR B4384 ) ( URA-PHOSPH-RXN ) URA-PHOSPH-RXN :gene-match deoxyuridine + phosphate = deoxyribose-1-phosphate + uracil 4 DURIt2pp deoxyuridine transport in via proton symport ( periplasm ) duri[p] + h[p] --> duri[c] + h[c] ( B2393 OR B2964 ) ( TRANS-RXN-108F ) TRANS-RXN-108F :gene-match H+[periplasmic space] + deoxyuridine[periplasmic space] =H+[cytosol] + deoxyuridine[cytosol] 2 DUTPDP dUTP diphosphatase [c] : dutp + h2o --> dump + h + ppi ( B3640 OR B2251 ) ( DUTP-PYROP-RXN ) ( ( RIGHT REMOVE PROTON ) ) DUTP-PYROP-RXN :gene-match dUTP + H2O -> dUMP + diphosphate h 4 DXPRIi 1-deoxy-D-xylulose reductoisomerase [c] : dxyl5p + h + nadph --> 2me4p + nadp B0173 ( DXPREDISOM-RXN ) ( ( LEFT REMOVE PROTON ) ) DXPREDISOM-RXN :gene-match 2-C-methyl-D-erythritol-4-phosphate + NADP+ = 1-deoxy-D-xylulose 5-phosphate + NADPH h 4 DXPS 1-deoxy-D-xylulose 5-phosphate synthase [c] : g3p + h + pyr --> co2 + dxyl5p B0420 ( DXS-RXN ) ( ( LEFT REMOVE PROTON ) ) DXS-RXN :gene-match pyruvate + D-glyceraldehyde-3-phosphate = CO2 + 1-deoxy-D-xylulose 5-phosphate h 4 DXYLK 1-Deoxy-D-xylulose kinase [c] : atp + dxyl --> adp + dxyl5p + h B3564 ( RXN0-382 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-382 :gene-match ATP + 1-deoxy-D-xylulose = 1-deoxy-D-xylulose 5-phosphate + ADP h 4 E4PD Erythrose 4-phosphate dehydrogenase [c] : e4p + h2o + nad <==> 4per + ( 2 ) h + nadh B2927 ( ERYTH4PDEHYDROG-RXN ) ERYTH4PDEHYDROG-RXN :gene-match D-erythrose-4-phosphate + H2O + NAD+ = erythronate-4-phosphate + NADH h 5 EAR100x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C10:0 ) [c] : h + nadh + tdec2eACP --> dcaACP + nad B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, dcaACP, tdec2eACP 2 EAR100y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C10:0 ) [c] : h + nadph + tdec2eACP --> dcaACP + nadp B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, dcaACP, tdec2eACP 2 EAR120x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C12:0 ) [c] : h + nadh + tddec2eACP --> ddcaACP + nad B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, tddec2eACP, ddcaACP 2 EAR120y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C12:0 ) [c] : h + nadph + tddec2eACP --> ddcaACP + nadp B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, tddec2eACP, ddcaACP 2 EAR121x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C12:1 ) [c] : h + nadh + t3c5ddeceACP --> cddec5eACP + nad B1288 ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP t3c5ddeceACP, h, cddec5eACP 2 EAR121y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C12:1 ) [c] : h + nadph + t3c5ddeceACP --> cddec5eACP + nadp B1288 ( RXN0-2145 ) ( ( LEFT REMOVE PROTON ) ) RXN0-2145 :gene-match trans-delta3-cis-delta5-dodecenoyl-ACP + NADPH = NADP+ + cis-delta5-dodecenoyl-ACP h 4 EAR140x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C14:0 ) [c] : h + nadh + tmrs2eACP --> myrsACP + nad B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP tmrs2eACP, h, myrsACP 2 EAR140y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C14:0 ) [c] : h + nadph + tmrs2eACP --> myrsACP + nadp B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP tmrs2eACP, h, myrsACP 2 EAR141x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C14:1 ) [c] : h + nadh + t3c7mrseACP --> nad + tdeACP B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tpalm2eACP h, t3c7mrseACP 3 EAR141y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C14:1 ) [c] : h + nadph + t3c7mrseACP --> nadp + tdeACP B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tpalm2eACP h, t3c7mrseACP 3 EAR160x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C16:0 ) [c] : h + nadh + tpalm2eACP --> nad + palmACP B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP h, palmACP 3 EAR160y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C16:0 ) [c] : h + nadph + tpalm2eACP --> nadp + palmACP B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP h, palmACP 3 EAR161x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C16:1 ) [c] : h + nadh + t3c9palmeACP --> hdeACP + nad B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP t3c9palmeACP, h, hdeACP 2 EAR161y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C16:1 ) [c] : h + nadph + t3c9palmeACP --> hdeACP + nadp B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP t3c9palmeACP, h, hdeACP 2 EAR180x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C18:0 ) [c] : h + nadh + toctd2eACP --> nad + ocdcaACP B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, ocdcaACP, toctd2eACP 2 EAR180y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C18:0 ) [c] : h + nadph + toctd2eACP --> nadp + ocdcaACP B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, ocdcaACP, toctd2eACP 2 EAR181x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C18:1 ) [c] : h + nadh + t3c11vaceACP --> nad + octeACP B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, octeACP, t3c11vaceACP 2 EAR181y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C18:1 ) [c] : h + nadph + t3c11vaceACP --> nadp + octeACP B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, octeACP, t3c11vaceACP 2 EAR40x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C4:0 ) [c] : but2eACP + h + nadh --> butACP + nad B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, but2eACP, butACP 2 EAR40y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C4:0 ) [c] : but2eACP + h + nadph --> butACP + nadp B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, but2eACP, butACP 2 EAR60x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C6:0 ) [c] : h + nadh + thex2eACP --> hexACP + nad B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, hexACP, thex2eACP 2 EAR60y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C6:0 ) [c] : h + nadph + thex2eACP --> hexACP + nadp B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, hexACP, thex2eACP 2 EAR80x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C8:0 ) [c] : h + nadh + toct2eACP --> nad + ocACP B1288 ( ENOYL-ACP-REDUCT-NADH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, ocACP, toct2eACP 2 EAR80y enoyl-[acyl-carrier-protein] reductase ( NADPH ) ( n-C8:0 ) [c] : h + nadph + toct2eACP --> nadp + ocACP B1288 ( ENOYL-ACP-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) ENOYL-ACP-REDUCT-NADPH-RXN :gene-match an acyl-ACP + NADP+ = NADPH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP h, ocACP, toct2eACP 2 ECOAH1 3-hydroxyacyl-CoA dehydratase ( 3-hydroxybutanoyl-CoA ) [c] : 3hbcoa <==> b2coa + h2o ( B3846 OR B2341 ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hbcoa, b2coa 1 ECOAH2 3-hydroxyacyl-CoA dehydratase ( 3-hydroxyhexanoyl-CoA ) [c] : 3hhcoa <==> h2o + hx2coa ( B3846 OR B2341 ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hhcoa, hx2coa 1 ECOAH3 3-hydroxyacyl-CoA dehydratase ( 3-hydroxyoctanoyl-CoA ) [c] : 3hocoa <==> h2o + oc2coa ( B2341 OR B3846 ) ( ENOYL-COA-HYDRAT-RXN ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hocoa, oc2coa 1 ECOAH4 3-hydroxyacyl-CoA dehydratase ( 3-hydroxydecanoyl-CoA ) [c] : 3hdcoa <==> dc2coa + h2o ( B3846 OR B2341 ) ( ENOYL-COA-HYDRAT-RXN ) ( :EXPANDED-RXN-MATCH ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hdcoa, dc2coa 1 ECOAH5 3-hydroxyacyl-CoA dehydratase ( 3-hydroxydodecanoyl-CoA ) [c] : 3hddcoa <==> dd2coa + h2o ( B3846 OR B2341 ) ( ENOYL-COA-HYDRAT-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hddcoa, dd2coa 1 ECOAH6 3-hydroxyacyl-CoA dehydratase ( 3-hydroxytetradecanoyl-CoA ) [c] : 3htdcoa <==> h2o + td2coa ( B3846 OR B2341 ) ( ENOYL-COA-HYDRAT-RXN ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3 ECOAH7 3-hydroxyacyl-CoA dehydratase ( 3-hydroxyhexadecanoyl-CoA ) [c] : 3hhdcoa <==> h2o + hdd2coa ( B3846 OR B2341 ) ( ENOYL-COA-HYDRAT-RXN ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa hdd2coa, 3hhdcoa 1 ECOAH8 3-hydroxyacyl-CoA dehydratase ( 3-hydroxyoctadecanoyl-CoA ) [c] : 3hodcoa <==> h2o + od2coa ( B3846 OR B2341 ) ( ENOYL-COA-HYDRAT-RXN ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa od2coa, 3hodcoa 1 EDA 2-dehydro-3-deoxy-phosphogluconate aldolase [c] : 2ddg6p --> g3p + pyr B1850 ( KDPGALDOL-RXN ) KDPGALDOL-RXN :gene-match 2-keto-3-deoxy-6-phospho-gluconate = D-glyceraldehyde-3-phosphate + pyruvate 3 EDD 6-phosphogluconate dehydratase [c] : 6pgc --> 2ddg6p + h2o B1851 ( PGLUCONDEHYDRAT-RXN ) PGLUCONDEHYDRAT-RXN :gene-match 6-phospho-D-gluconate = 2-keto-3-deoxy-6-phospho-gluconate + H2O 3 EDTXS1 Endotoxin Synthesis ( lauroyl transferase ) [c] : ddcaACP + kdo2lipid4 --> ACP + kdo2lipid4L B1054 ( LAUROYLACYLTRAN-RXN ) LAUROYLACYLTRAN-RXN :gene-match KDO2-lipid IVA + lauroyl-ACP = KDO2-(lauroyl)-lipid IVA + acyl carrier protein 4 EDTXS2 Endotoxin Synthesis ( myristoyl transferase ) [c] : kdo2lipid4L + myrsACP --> ACP + lipa B1855 ( MYRISTOYLACYLTRAN-RXN ) MYRISTOYLACYLTRAN-RXN :gene-match KDO2-(lauroyl)-lipid IVA + myristoyl-ACP = KDO2-lipid A + acyl carrier protein 4 EDTXS3 Endotoxin Synthesis ( palmitoleoyl ACP ) [c] : hdeACP + kdo2lipid4 --> ACP + kdo2lipid4p B2378 ( PALMITOTRANS-RXN ) PALMITOTRANS-RXN :gene-match KDO2-lipid IVA + palmitoleoyl-ACP = KDO2-(palmitoleoyl)-lipid IVA + acyl carrier protein 4 EDTXS4 Endotoxin Synthesis ( myristoyl transferase ) [c] : kdo2lipid4p + myrsACP --> ACP + lipa_cold B1855 ( MYRPALMTRAN-RXN ) MYRPALMTRAN-RXN :gene-match KDO2-(palmitoleoyl)-lipid IVA + myristoyl-ACP = KDO2-lipid A, cold adapted + acyl carrier protein 4 ENO enolase [c] : 2pg <==> h2o + pep B2779 ( 2PGADEHYDRAT-RXN ) 2PGADEHYDRAT-RXN :gene-match 2-phosphoglycerate = phosphoenolpyruvate + H2O 3 ENTCS enterochelin synthase [c] : ( 3 ) 23dhba + ( 3 ) seramp --> ( 6 ) amp + enter + ( 9 ) h B0583 ( ENTG-RXN ) ( ( RIGHT REMOVE PROTON ) ) ENTMULTI-RXN :gene-match 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 diphosphate + 6 AMP + enterobactin 23dhb, ppi, ser-L, atp h, seramp, 23dhba 2 ENTERES Enterochelin Esterase [c] : enter + ( 3 ) h2o --> ( 3 ) 23dhbzs + ( 3 ) h B0585 ( RXN0-1661 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-1661 :gene-match enterobactin + 3 H2O -> 3 2,3-dihydroxybenzoylserine h 3 ENTERES2 Enterochelin Esterase ( Fe containing ) [c] : feenter + ( 3 ) h2o --> ( 3 ) 23dhbzs + fe3 + ( 3 ) h B0585 RXN0-1661 :gene-match enterobactin + 3 H2O -> 3 2,3-dihydroxybenzoylserine enter feenter, h, fe3 2 ETHAAL Ethanolamine ammonia-lyase [c] : etha --> acald + nh4 ( B2440 AND B2441 ) ( ETHAMLY-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) ETHAMLY-RXN :gene-match ethanolamine = acetaldehyde + ammonia AMMONIA nh4 2 ETHAtex ethanolamine transport via diffusion ( extracellular ) etha[e] <==> etha[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da etha 0 ETHSO3tex ethanesulfonate transport via diffusion ( extracellular to periplasm ) ethso3[e] <==> ethso3[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ethso3 0 ETOHtex ethanol transport via diffusion ( extracellular to periplasm ) etoh[e] <==> etoh[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da etoh 0 F6PA fructose 6-phosphate aldolase [c] : f6p <==> dha + g3p ( B0825 OR B3946 ) ( RXN0-313 ) RXN0-313 :gene-match D-fructose-6-phosphate = dihydroxy-acetone + D-glyceraldehyde-3-phosphate 3 F6PP D-fructose 6-phosphate phosphatase [c] : f6p + h2o --> fru + pi B0822 ( SUGAR-PHOSPHATASE-RXN ) ( :EXPANDED-RXN-MATCH ) SUGAR-PHOSPHATASE-RXN :gene-match H2O + a sugar phosphate = a sugar + phosphate Sugar-Phosphate, Sugar fru, f6p 2 F6Pt6_2pp Fructose-6-phosphate transport via phosphate antiport ( periplasm ) f6p[p] + ( 2 ) pi[c] --> f6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h, g6p pi, f6p 0 F6Ptex fructose 6-phosphate transport via diffusion ( extracellular to periplasm ) f6p[e] <==> f6p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da f6p 0 FA100ACPHi fatty-acyl-ACP hydrolase [c] : dcaACP + h2o --> ACP + dca + h B0404 ( RXN-7902 ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p h, dcaACP, dca 2 FA120ACPHi fatty-acyl-ACP hydrolase [c] : ddcaACP + h2o --> ACP + ddca + h B0404 ( RXN-7902 ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p h, ddca, ddcaACP 2 FA140ACPHi fatty-acyl-ACP hydrolase [c] : h2o + myrsACP --> ACP + h + ttdca B0404 ( RXN-7902 ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p h, myrsACP, ttdca 2 FA141ACPHi fatty-acyl-ACP hydrolase [c] : h2o + tdeACP --> ACP + h + ttdcea B0404 ( :UNMAPPED-CPDS ) 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p h, tdeACP, ttdcea 2 FA160ACPHi fatty-acyl-ACP hydrolase [c] : h2o + palmACP --> ACP + h + hdca B0404 ( RXN-7902 ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p hdca, h, palmACP 2 FA161ACPHi fatty-acyl-ACP hydrolase [c] : h2o + hdeACP --> ACP + h + hdcea B0404 ( RXN-7902 ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p hdeACP, hdcea, h 2 FA80ACPHi fatty-acyl-ACP hydrolase [c] : h2o + ocACP --> ACP + h + octa B0404 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p h, ocACP, octa 2 FACOAE100 fatty-acid-CoA thioesterase ( decanoate ) [c] : dcacoa + h2o --> coa + dca + h B0452 ( 3.1.2.18-RXN 3.1.2.19-RXN ACYL-COA-HYDROLASE-RXN THIOESTER-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa dcacoa, dca, h 2 FACOAE120 fatty-acid-CoA thioesterase ( dodecanoate ) [c] : ddcacoa + h2o --> coa + ddca + h B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa ddcacoa, ddca, h 2 FACOAE140 fatty-acid-CoA thioesterase ( tetradecanoate ) [c] : h2o + tdcoa --> coa + h + ttdca B0452 ( 3.1.2.18-RXN 3.1.2.19-RXN ACYL-COA-HYDROLASE-RXN THIOESTER-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, tdcoa, ttdca 2 FACOAE141 fatty-acid-CoA thioesterase ( tetradecenoate ) [c] : h2o + tdecoa --> coa + h + ttdcea B0452 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid h, ttdcea 3 FACOAE160 fatty-acid-CoA thioesterase ( hexadecanoate ) [c] : h2o + pmtcoa --> coa + h + hdca B0452 ( PALMITOYL-COA-HYDROLASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa hdca, h, pmtcoa 2 FACOAE161 fatty-acid-CoA thioesterase ( hexadecenoate ) [c] : h2o + hdcoa --> coa + h + hdcea B0452 ( THIOESTER-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, hdcoa, hdcea 2 FACOAE180 fatty-acid-CoA thioesterase ( octadecanoate ) [c] : h2o + stcoa --> coa + h + ocdca B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, stcoa, ocdca 2 FACOAE181 fatty-acid-CoA thioesterase ( octadecenoate ) [c] : h2o + odecoa --> coa + h + ocdcea B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, odecoa, ocdcea 2 FACOAE60 fatty-acid-CoA thioesterase ( hexanoate ) [c] : h2o + hxcoa --> coa + h + hxa B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, hxa, hxcoa 2 FACOAE80 fatty-acid-CoA thioesterase ( octanoate ) [c] : h2o + occoa --> coa + h + octa B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa occoa, h, octa 2 FACOAL100t2pp fatty-acid-CoA ligase ( decanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + dca[p] + h[p] --> amp[c] + dcacoa[c] + h[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, dcacoa, dca 4 FACOAL120t2pp fatty-acid-CoA ligase ( dodecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + ddca[p] + h[p] --> amp[c] + ddcacoa[c] + h[c] + ppi[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, ddca, ddcacoa 4 FACOAL140t2pp fatty-acid-CoA ligase ( tetradecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ttdca[p] --> amp[c] + h[c] + ppi[c] + tdcoa[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa ttdca, tdcoa, h 4 FACOAL141t2pp fatty-acid-CoA ligase ( tetradecenoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ttdcea[p] --> amp[c] + h[c] + ppi[c] + tdecoa[c] ( B1701 OR B1805 ) ( :UNMAPPED-CPDS ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid h, ttdcea 5 FACOAL160t2pp fatty-acid-CoA ligase ( hexadecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + hdca[p] --> amp[c] + h[c] + pmtcoa[c] + ppi[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa hdca, h, pmtcoa 4 FACOAL161t2pp fatty-acid-CoA ligase ( hexadecenoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + hdcea[p] --> amp[c] + h[c] + hdcoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, hdcoa, hdcea 4 FACOAL180t2pp fatty-acid-CoA ligase ( octadecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ocdca[p] --> amp[c] + h[c] + ppi[c] + stcoa[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, stcoa, ocdca 4 FACOAL181t2pp fatty-acid-CoA ligase ( octadecenoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ocdcea[p] --> amp[c] + h[c] + odecoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, odecoa, ocdcea 4 FACOAL60t2pp fatty-acid-CoA ligase ( hexanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + hxa[p] --> amp[c] + h[c] + hxcoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, hxa, hxcoa 4 FACOAL80t2pp fatty-acid-CoA ligase ( octanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + octa[p] --> amp[c] + h[c] + occoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa occoa, h, octa 4 FADRx FAD reductase [c] : fad + h + nadh --> fadh2 + nad B3844 FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), fmn, fmnh2, NAD(P)H fadh2, nadh, fad, nad 1 FADRx2 FAD reductase [c] : fad + h + nadph --> fadh2 + nadp ( B2763 AND B2764 ) SULFITE-REDUCT-RXN :gene-match 3 H2O + 3 NADP+ + hydrogen sulfide = 3 NADPH + sulfite h2o, so3, h2s h, fadh2, fad 2 FALDH2 formaldehyde dehydrogenase [c] : hmgth + nad <==> Sfglutth + h + nadh B0356 ( RXN-2962 ) ( :EXPANDED-RXN-MATCH ) RXN-2962 :gene-match S-hydroxymethylglutathione + NAD(P)+ = S-formylglutathione + NAD(P)H + H+ NAD(P), NAD(P)H nadh, nad 3 FALDtex formaldehyde transport via diffusion ( extracellular to periplasm ) fald[e] <==> fald[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fald 0 FBA fructose-bisphosphate aldolase [c] : fdp <==> dhap + g3p ( B2097 OR B1773 OR B2925 ) ( F16ALDOLASE-RXN ) F16ALDOLASE-RXN :gene-match fructose-1,6-bisphosphate = dihydroxy-acetone-phosphate + D-glyceraldehyde-3-phosphate 3 FBP fructose-bisphosphatase [c] : fdp + h2o --> f6p + pi ( B3925 OR B4232 ) ( F16BDEPHOS-RXN ) F16BDEPHOS-RXN :gene-match fructose-1,6-bisphosphate + H2O = D-fructose-6-phosphate + phosphate 4 FCI L-fucose isomerase [c] : fuc-L <==> fcl-L B2802 ( FUCISOM-RXN ) FUCISOM-RXN :gene-match L-fucose = L-fuculose 2 FCLK L-fuculokinase [c] : atp + fcl-L --> adp + fc1p + h B2803 ( FUCULOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) FUCULOKIN-RXN :gene-match L-fuculose + ATP -> fuculose-1-phosphate + ADP h 4 FCLPA L-fuculose 1-phosphate aldolase [c] : fc1p <==> dhap + lald-L ( B2800 OR B2738 ) ( FUCPALDOL-RXN ) FUCPALDOL-RXN :gene-match fuculose-1-phosphate = lactaldehyde + dihydroxy-acetone-phosphate 3 FCLT Ferrochelatase [c] : fe2 + ppp9 --> ( 2 ) h + pheme B0475 ( PROTOHEMEFERROCHELAT-RXN ) PROTOHEMEFERROCHELAT-RXN :gene-match Fe2+ + protoporphyrin IX = 2 H+ + protoheme IX 4 FDH4pp formate dehydrogenase ( quinone-8 ) ( periplasm ) for[p] + ( 2 ) h[c] + q8[c] --> co2[c] + h[p] + q8h2[c] ( ( B3892 AND B3893 AND B3894 ) OR ( B1474 AND B1475 AND B1476 ) ) FORMATEDEHYDROG-RXN :gene-match formate + menaquinone-8 = CO2 + menaquinol mqn8, mql8 h, q8h2, q8 2 FDH5pp Formate Dehydrogenase ( menaquinone-8 ) ( periplasm ) for[p] + ( 2 ) h[c] + mqn8[c] --> co2[c] + h[p] + mql8[c] ( ( B1474 AND B1475 AND B1476 ) OR ( B3892 AND B3893 AND B3894 ) ) FORMATEDEHYDROG-RXN :gene-match formate + menaquinone-8 = CO2 + menaquinol h 4 FDMO FMNH2-dependent monooxygenase [c] : fmnh2 + isetac + o2 --> fmn + gcald + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac h, isetac, gcald 5 FDMO2 FMNH2-dependent monooxygenase ( methanesulfonate ) [c] : fmnh2 + mso3 + o2 --> fald + fmn + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac h, mso3, fald 5 FDMO3 FMNH2-dependent monooxygenase ( ethanesulfonate ) [c] : ethso3 + fmnh2 + o2 --> acald + fmn + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac ethso3, h, acald 5 FDMO4 FMNH2-dependent monooxygenase ( butanesulfonate ) [c] : butso3 + fmnh2 + o2 --> btal + fmn + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac h, butso3, btal 5 FDMO6 FMNH2-dependent monooxygenase ( sulfoacetate ) [c] : fmnh2 + o2 + sulfac --> fmn + glx + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde glx, h 6 FE2abcpp iron ( II ) transport via ABC system ( periplasm ) atp[c] + fe2[p] + h2o[c] --> adp[c] + fe2[c] + h[c] + pi[c] B3409 TRANS-RXN-8 :gene-match Fe2+[periplasmic space] =Fe2+[cytosol] h, h2o, pi, atp, adp 1 FE2t2pp iron ( II ) transport in via proton symport ( periplasm ) fe2[p] + h[p] --> fe2[c] + h[c] B2392 ( RXN0-2421 ) RXN0-2421 :gene-match Fe2+[periplasmic space] + H+[periplasmic space] =Fe2+[cytosol] + H+[cytosol] 2 FE2t3pp iron ( Fe+2 ) transport out via proton antiport ( periplasm ) fe2[c] + h[p] --> fe2[p] + h[c] B3915 ( TRANS-RXN-8 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-6 :gene-match Fe2+[cytoplasm] + H+[periplasmic space] =Fe2+[periplasmic space] + H+[cytoplasm] 2 FE2tex iron ( II ) transport via diffusion ( extracellular to periplasm ) fe2[e] <==> fe2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fe2 0 FE2tpp iron ( +2 ) transport in via permease ( no H+ ) fe2[p] --> fe2[c] B3040 ( TRANS-RXN-8 ) TRANS-RXN-8 :gene-match Fe2+[periplasmic space] =Fe2+[cytosol] 1 FE3DCITabcpp iron transport from ferric-dicitrate via ABC system ( periplasm ) atp[c] + fe3dcit[p] + h2o[c] --> adp[c] + ( 2 ) cit[c] + fe3[c] + h[c] + pi[c] ( B4290 AND B4289 AND B4288 AND B4287 ) ABC-9-RXN :gene-match ATP + ferric dicitrate[periplasmic space] + H2O =ADP + phosphate + ferric dicitrate[cytosol] h, fe3, cit 5 FE3DCITtonex ferric-dicitrate transport via ton system ( extracellular ) fe3dcit[e] + h[p] --> fe3dcit[p] + h[c] ( B4291 AND ( B1252 AND B3005 AND B3006 ) ) ( RXN0-1684 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] h 1 FE3DHBZSabcpp "ferric 2,3-dihydroxybenzoylserine transport via ABC system ( periplasm )" atp[c] + fe3dhbzs[p] + h2o[c] --> adp[c] + fe3dhbzs[c] + h[c] + pi[c] ( B0592 AND B0588 AND B0590 AND B0589 ) ABC-10-RXN :gene-match ATP + ferric enterobactin[periplasmic space] + H2O =ADP + phosphate + ferric enterobactin[cytosol] feenter fe3dhbzs, h 4 FE3DHBZStonex "ferric 2,3-dihydroxybenzoylserine transport via ton system ( extracellular )" fe3dhbzs[e] + h[p] --> fe3dhbzs[p] + h[c] ( ( B0805 AND ( B1252 AND B3005 AND B3006 ) ) OR ( B2155 AND ( B1252 AND B3005 AND B3006 ) ) ) ( RXN0-1721 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-1721 :gene-match ferric dihydroxybenzoylserine[extracellular space] =ferric dihydroxybenzoylserine[periplasmic space] h 1 FE3HOXabcpp ferric-dicitrate transport via ABC system ( periplasm ) atp[c] + fe3hox[p] + h2o[c] --> adp[c] + fe3hox[c] + h[c] + pi[c] ( B0153 AND B0151 AND B0152 ) ( ABC-11-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-11-RXN :gene-match ATP + iron (III) hydroxamate complex[periplasmic space] + H2O =ADP + phosphate + iron (III) hydroxamate complex[cytosol] h 5 FE3HOXtonex Fe( III )hydroxamine transport via ton system ( extracellular ) fe3hox[e] + h[p] --> fe3hox[p] + h[c] ( B0150 AND ( B1252 AND B3005 AND B3006 ) ) ( RXN0-1701 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-1701 :gene-match iron (III) hydroxamate complex[extracellular space] =iron (III) hydroxamate complex[periplasmic space] h 1 FE3Ri Fe( III ) reduction [c] : fadh2 + ( 2 ) fe3 --> fad + ( 2 ) fe2 + ( 2 ) h B3844 FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), fmn, fmnh2, NAD(P)H fadh2, fe2, fe3, fad 1 FE3tex iron ( III ) transport via diffusion ( extracellular to periplasm ) fe3[e] <==> fe3[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fe3 0 FECRMabcpp ferrichrome transport via ABC system ( periplasm ) atp[c] + fecrm[p] + h2o[c] --> adp[c] + fecrm[c] + h[c] + pi[c] ( B0153 AND B0151 AND B0152 ) ( :UNMAPPED-CPDS ) ABC-11-RXN :gene-match ATP + iron (III) hydroxamate complex[periplasmic space] + H2O =ADP + phosphate + iron (III) hydroxamate complex[cytosol] fe3hox fecrm, h 4 FECRMtonex ferrichrome transport via ton system ( extracellular ) fecrm[e] + h[p] --> fecrm[p] + h[c] ( B0150 AND ( B1252 AND B3005 AND B3006 ) ) ( :UNMAPPED-CPDS ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] fe3dcit fecrm, h 0 FEENTERabcpp Fe-enterobactin transport via ABC system ( periplasm ) atp[c] + feenter[p] + h2o[c] --> adp[c] + feenter[c] + h[c] + pi[c] ( B0592 AND B0588 AND B0590 AND B0589 ) ( ABC-10-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-10-RXN :gene-match ATP + ferric enterobactin[periplasmic space] + H2O =ADP + phosphate + ferric enterobactin[cytosol] h 5 FEENTERtonex Fe-enterobactin transport via ton system ( extracellular ) feenter[e] + h[p] --> feenter[p] + h[c] ( B0584 AND ( B1252 AND B3005 AND B3006 ) ) ( RXN0-1682 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-1682 :gene-match ferric enterobactin[extracellular space] =ferric enterobactin[periplasmic space] h 1 FEENTERtpp enterochelin transport ( secretion ) enter[c] + h[p] --> enter[p] + h[c] B0591 RXN0-8 :gene-match enterobactin[cytoplasm] + H+[extracellular space] =enterobactin[extracellular space] + H+[cytoplasm] 2 FEOXAMabcpp ferroxamine transport via ABC system ( periplasm ) atp[c] + feoxam[p] + h2o[c] --> adp[c] + feoxam[c] + h[c] + pi[c] ( B0153 AND B0151 AND B0152 ) ( :UNMAPPED-CPDS ) ABC-11-RXN :gene-match ATP + iron (III) hydroxamate complex[periplasmic space] + H2O =ADP + phosphate + iron (III) hydroxamate complex[cytosol] fe3hox h, feoxam 4 FEOXAMtonex ferroxamine transport via ton system ( extracellular ) feoxam[e] + h[p] --> feoxam[p] + h[c] ( B0150 AND ( B1252 AND B3005 AND B3006 ) ) ( :UNMAPPED-CPDS ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] fe3dcit h, feoxam 0 FEROpp ferroxidase [p] : ( 4 ) fe2 + ( 4 ) h + o2 --> ( 4 ) fe3 + ( 2 ) h2o B0123 RXN0-1483 :gene-match 4 Fe2+ + 4 H+ + O2 -> 4 Fe3+ + 2 H2O 5 FHL Formate-hydrogen lyase [c] : for + h --> co2 + h2 ( ( B4079 AND ( B2481 AND B2482 AND B2483 AND B2484 AND B2485 AND B2486 AND B2487 AND B2488 AND B2489 AND B2490 ) ) OR ( B4079 AND ( B2719 AND B2720 AND B2721 AND B2722 AND B2723 AND B2724 ) ) ) ( FHLMULTI-RXN ) ( ( LEFT REMOVE PROTON ) ) FHLMULTI-RXN :gene-match formate = CO2 + H2 h 3 FLDR flavodoxin reductase ( NADPH ) [c] : fldox + h + nadph --> fldrd + nadp ( ( B0684 AND B3924 ) OR ( B2895 AND B3924 ) ) ( FLAVONADPREDUCT-RXN ) FLAVONADPREDUCT-RXN :gene-match reduced flavodoxin + NADP+ = oxidized flavodoxin + NADPH + H+ 5 FLVR flavin reductase [c] : h + nadph + ribflv --> nadp + rbflvrd ( ( B2763 AND B2764 ) OR B3844 ) ( |NADPH-DEHYDROGENASE-( FLAVIN )-RXN| ) ( :METACYC ( LEFT REMOVE PROTON ) ) SULFITE-REDUCT-RXN :gene-match 3 H2O + 3 NADP+ + hydrogen sulfide = 3 NADPH + sulfite h2o, so3, h2s h, rbflvrd, ribflv 2 FLVR(NAD) flavin reductase ( NAD ) [c] : h + nadh + ribflv --> nad + rbflvrd B3844 FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), fmn, fmnh2, NAD(P)H nadh, rbflvrd, nad, ribflv 1 FMETTRS Methionyl-tRNA formyltransferase [c] : 10fthf + mettrna --> fmettrna + h + thf B3288 METHIONYL-TRNA-FORMYLTRANSFERASE-RXN :gene-match N10-formyl-THF + L-methionyl-tRNAfmet + H2O = tetrahydrofolate + N-formyl-L-methionyl-tRNAfmet L-methionyl-tRNAfmet, h2o, N-formyl-L-methionyl-tRNAfmet mettrna, h, fmettrna 2 FMNAT FMN adenylyltransferase [c] : atp + fmn + h --> fad + ppi B0025 ( FADSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) FADSYN-RXN :gene-match FMN + ATP = FAD + diphosphate h 4 FMNRx FMN reductase [c] : fmn + h + nadh --> fmnh2 + nad ( B0937 OR B3844 ) ( FMNREDUCT-RXN ) ( :EXPANDED-RXN-MATCH ) FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), NAD(P)H nadh, nad 3 FMNRx2 FMN reductase [c] : fmn + h + nadph --> fmnh2 + nadp ( B0937 OR ( B2763 AND B2764 ) OR B3844 ) ( FMNREDUCT-RXN ) ( :EXPANDED-RXN-MATCH ) FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), NAD(P)H nadph, nadp 3 FORt2pp "formate transport via proton symport ( uptake only, periplasm )" for[p] + h[p] --> for[c] + h[c] ( B0904 OR B2492 ) ( TRANS-RXN-1 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) TRANS-RXN-1 :gene-match formate[cytosol] =formate[periplasmic space] h 1 FORtex formate transport via diffusion ( extracellular to periplasm ) for[e] <==> for[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da for 0 FORtppi formate transport via diffusion ( cytoplasm to periplasm ) for[c] --> for[p] ( B0904 OR B2492 ) ( TRANS-RXN-1 ) TRANS-RXN-1 :gene-match formate[cytosol] =formate[periplasmic space] 1 FRD2 fumarate reductase [c] : fum + mql8 --> mqn8 + succ ( B4151 AND B4152 AND B4153 AND B4154 ) R601-RXN :gene-match fumarate + menaquinol + 2 H+ -> succinate + menaquinone-8 h 4 FRD3 fumarate reductase [c] : 2dmmql8 + fum --> 2dmmq8 + succ ( B4151 AND B4152 AND B4153 AND B4154 ) R601-RXN :gene-match fumarate + menaquinol + 2 H+ -> succinate + menaquinone-8 mqn8, h, mql8 2dmmq8, 2dmmql8 2 FRUK fructose-1-phosphate kinase [c] : atp + f1p --> adp + fdp + h B2168 ( 1PFRUCTPHOSN-RXN ) ( ( RIGHT REMOVE PROTON ) ) 1PFRUCTPHOSN-RXN :gene-match ATP + fructose-1-phosphate -> ADP + fructose-1,6-bisphosphate h 4 FRULYSDG Fructoselysine phosphate deglycase [c] : frulysp + h2o <==> g6p + lys-L B3371 ( RXN0-963 ) RXN0-963 :gene-match fructoselysine-6-phosphate + H2O = beta-D-glucose-6-phosphate + L-lysine 4 FRULYSE fructoselysine 3-epimerase [c] : psclys <==> frulys B4474 ( RXN0-4841 ) RXN0-4841 :gene-match psicoselysine = fructoselysine 2 FRULYSK Fructoselysine Kinase [c] : atp + frulys --> adp + frulysp + h B3374 ( RXN0-962 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-962 :gene-match fructoselysine + ATP = fructoselysine-6-phosphate + ADP h 4 FRULYStex fructoselysine transporter via diffusion ( extracellular ) frulys[e] <==> frulys[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da frulys 0 FRUpts2pp Fructose transport via PEP:Pyr PTS ( f6p generating ) ( periplasm ) fru[p] + pep[c] --> f6p[c] + pyr[c] ( B1817 AND B1818 AND B1819 AND B2415 AND B2416 ) ( TRANS-RXN-158A ) TRANS-RXN-158A :gene-match phosphoenolpyruvate + fructose[periplasmic space] =D-fructose-6-phosphate[cytosol] + pyruvate 4 FRUptspp D-fructose transport via PEP:Pyr PTS ( periplasm ) fru[p] + pep[c] --> f1p[c] + pyr[c] ( B2167 AND B2169 AND B2415 AND B2416 ) ( TRANS-RXN-158 ) TRANS-RXN-158 :gene-match phosphoenolpyruvate + fructose[periplasmic space] =fructose-1-phosphate[cytosol] + pyruvate 4 FRUtex D-fructose transport via diffusion ( extracellular to periplasm ) fru[e] <==> fru[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fru 0 FRUURt2rpp "D-fructuronate transport via proton symport, reversible ( periplasm )" fruur[p] + h[p] <==> fruur[c] + h[c] B4321 ( TRANS-RXN-81 ) TRANS-RXN-81 :gene-match H+[periplasmic space] + fructuronate[periplasmic space] =H+[cytosol] + fructuronate[cytosol] 2 FRUURtex D-fructuronate transport via diffusion ( extracellular ) fruur[e] <==> fruur[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fruur 0 FTHFD formyltetrahydrofolate deformylase [c] : 10fthf + h2o --> for + h + thf B1232 ( FORMYLTHFDEFORMYL-RXN ) ( ( RIGHT REMOVE PROTON ) ) FORMYLTHFDEFORMYL-RXN :gene-match H2O + N10-formyl-THF -> tetrahydrofolate + formate h 4 FUCtex L-fucose transport via diffusion ( extracellular to periplasm ) fuc-L[e] <==> fuc-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fuc-L 0 FUCtpp L-fucose transport via proton symport ( periplasm ) fuc-L[p] + h[p] <==> fuc-L[c] + h[c] B2801 ( TRANS-RXN-20 ) TRANS-RXN-20 :gene-match H+[periplasmic space] + L-fucose[periplasmic space] =H+[cytosol] + L-fucose[cytosol] 2 FUM fumarase [c] : fum + h2o <==> mal-L ( B1612 OR B4122 OR B1611 ) ( FUMHYDR-RXN ) FUMHYDR-RXN :gene-match malate = fumarate + H2O 3 FUMt2_2pp Fumarate transport via proton symport ( 2 H ) ( periplasm ) fum[p] + ( 2 ) h[p] --> fum[c] + ( 2 ) h[c] B3528 ( TRANS-RXN-121B TRANS-RXN-202 ) TRANS-RXN-121B :gene-match Na+[periplasmic space] + fumarate[periplasmic space] =Na+[cytosol] + fumarate[cytosol] na1 h 1 FUMt2_3pp Fumarate transport via proton symport ( 3 H ) ( periplasm ) fum[p] + ( 3 ) h[p] --> fum[c] + ( 3 ) h[c] ( B4138 OR B4123 OR B0621 ) ( TRANS-RXN-121B TRANS-RXN-202 ) TRANS-RXN-202 :gene-match H+[periplasmic space] + fumarate[periplasmic space] =fumarate[cytosol] + H+[cytosol] 2 FUMtex Fumarate transport via diffusion ( extracellular to periplasm ) fum[e] <==> fum[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da fum 0 G1PACT glucosamine-1-phosphate N-acetyltransferase [c] : accoa + gam1p --> acgam1p + coa + h B3730 ( 2.3.1.157-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2.3.1.157-RXN :gene-match D-glucosamine 1-phosphate + acetyl-CoA -> N-acetyl-glucosamine-1-phosphate + coenzyme A h 4 G1PPpp Glucose-1-phosphatase [p] : g1p + h2o --> glc-D + pi B1002 GLUCOSE-1-PHOSPHAT-RXN :gene-match H2O + alpha-D-glucose 1-phosphate -> phosphate + beta-D-glucose GLC glc-D 3 G1Ptex D-glucose 1-phosphate transport via diffusion g1p[e] <==> g1p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g1p 0 G1PTT glucose-1-phosphate thymidylyltransferase [c] : dttp + g1p + h --> dtdpglu + ppi ( B3789 OR B2039 ) ( DTDPGLUCOSEPP-RXN ) ( ( LEFT REMOVE PROTON ) ) DTDPGLUCOSEPP-RXN :gene-match alpha-D-glucose 1-phosphate + dTTP = dTDP-D-glucose + diphosphate h 4 G1SAT glutamate-1-semialdehyde aminotransferase [c] : glu1sa <==> 5aop B0154 ( GSAAMINOTRANS-RXN ) GSAAMINOTRANS-RXN :gene-match glutamate-1-semialdehyde = 5-amino-levulinate 2 G2PPpp glycerol 2-phosphate phosphatase ( periplasmic ) [p] : glyc2p + h2o --> glyc + pi B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters glyc2p, glyc 2 G3PAT120 glycerol-3-phosphate acyltransferase ( C12:0 ) [c] : ddcaACP + glyc3p --> 1ddecg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) ( :EXPANDED-RXN-MATCH ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein tdeACP, 1tdecg3p 1ddecg3p, ddcaACP 2 G3PAT140 glycerol-3-phosphate acyltransferase ( C14:0 ) [c] : glyc3p + myrsACP --> 1tdecg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) ( :EXPANDED-RXN-MATCH ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein tdeACP myrsACP 3 G3PAT141 glycerol-3-phosphate acyltransferase ( C14:1 ) [c] : glyc3p + tdeACP --> 1tdec7eg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein 1tdecg3p 1tdec7eg3p 3 G3PAT160 glycerol-3-phosphate acyltransferase ( C16:0 ) [c] : glyc3p + palmACP --> 1hdecg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein tdeACP, 1tdecg3p 1hdecg3p, palmACP 2 G3PAT161 glycerol-3-phosphate acyltransferase ( C16:1 ) [c] : glyc3p + hdeACP --> 1hdec9eg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) ( :EXPANDED-RXN-MATCH ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein tdeACP, 1tdecg3p hdeACP, 1hdec9eg3p 2 G3PAT180 glycerol-3-phosphate acyltransferase ( C18:0 ) [c] : glyc3p + ocdcaACP --> 1odecg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein tdeACP, 1tdecg3p ocdcaACP, 1odecg3p 2 G3PAT181 glycerol-3-phosphate acyltransferase ( C18:1 ) [c] : glyc3p + octeACP --> 1odec11eg3p + ACP B4041 ( GLYCEROL-3-P-ACYLTRANSFER-RXN ) GLYCEROL-3-P-ACYLTRANSFER-RXN :gene-match sn-glycerol-3-phosphate + an acyl-ACP -> a 1-acyl-sn-glycerol-3P + acyl carrier protein tdeACP, 1tdecg3p octeACP, 1odec11eg3p 2 G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system ( periplasm ) atp[c] + g3pc[p] + h2o[c] --> adp[c] + g3pc[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p g3pc, h 4 G3PCtex glycero-3-phosphocholine transport via diffusion ( extracellular to periplasm ) g3pc[e] <==> g3pc[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g3pc 0 G3PD2 glycerol-3-phosphate dehydrogenase ( NADP ) [c] : glyc3p + nadp <==> dhap + h + nadph B3608 ( GLYC3PDEHYDROGBIOSYN-RXN ) ( :EXPANDED-RXN-MATCH ) GLYC3PDEHYDROGBIOSYN-RXN :gene-match sn-glycerol-3-phosphate + NAD(P)+ = dihydroxy-acetone-phosphate + NAD(P)H + H+ NAD(P), NAD(P)H nadph, nadp 3 G3PD5 glycerol-3-phosphate dehydrogenase ( ubiquinone-8 ) [c] : glyc3p + q8 --> dhap + q8h2 ( ( B2241 AND B2242 AND B2243 ) OR B3426 ) ( GLYC3PDEHYDROG-RXN ) GLYC3PDEHYDROG-RXN :gene-match sn-glycerol-3-phosphate + ubiquinone-8 = dihydroxy-acetone-phosphate + ubiquinol-8 4 G3PD6 glycerol-3-phosphate dehydrogenase ( menaquinone-8 ) [c] : glyc3p + mqn8 --> dhap + mql8 ( B2241 AND B2242 AND B2243 ) GLYC3PDEHYDROG-RXN :gene-match sn-glycerol-3-phosphate + ubiquinone-8 = dihydroxy-acetone-phosphate + ubiquinol-8 q8, q8h2 mqn8, mql8 2 G3PD7 glycerol-3-phosphate dehydrogenase ( demethylmenaquinone-8 ) [c] : 2dmmq8 + glyc3p --> 2dmmql8 + dhap ( B2241 AND B2242 AND B2243 ) GLYC3PDEHYDROG-RXN :gene-match sn-glycerol-3-phosphate + ubiquinone-8 = dihydroxy-acetone-phosphate + ubiquinol-8 q8, q8h2 2dmmq8, 2dmmql8 2 G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system ( periplasm ) atp[c] + g3pe[p] + h2o[c] --> adp[c] + g3pe[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3pe 4 G3PEtex glycero-3-phosphoethanolamine transport via diffusion ( extracellular to periplasm ) g3pe[e] <==> g3pe[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g3pe 0 G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system ( periplasm ) atp[c] + g3pg[p] + h2o[c] --> adp[c] + g3pg[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3pg 4 G3PGtex glycerophoglycerol transport via diffusion ( extracellular to periplasm ) g3pg[e] <==> g3pg[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g3pg 0 G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system ( periplasm ) atp[c] + g3pi[p] + h2o[c] --> adp[c] + g3pi[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3pi 4 G3PItex glycero-3-phospho-1-inositol transport via diffusion ( extracellular to periplasm ) g3pi[e] <==> g3pi[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g3pi 0 G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system ( periplasm ) atp[c] + g3ps[p] + h2o[c] --> adp[c] + g3ps[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ( :UNMAPPED-CPDS ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3ps 4 G3PStex glycerophosphserine transport via diffusion ( extracellular to periplasm ) g3ps[e] <==> g3ps[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g3ps 0 G3PT glycerol-3-phosphatase [c] : glyc3p + h2o --> glyc + pi B0822 ( GLYCEROL-1-PHOSPHATASE-RXN ) ( :METACYC ) SUGAR-PHOSPHATASE-RXN :gene-match H2O + a sugar phosphate = a sugar + phosphate Sugar-Phosphate, Sugar glyc, glyc3p 2 G5SD glutamate-5-semialdehyde dehydrogenase [c] : glu5p + h + nadph --> glu5sa + nadp + pi B0243 ( GLUTSEMIALDEHYDROG-RXN ) GLUTSEMIALDEHYDROG-RXN :gene-match L-glutamate gamma-semialdehyde + phosphate + NADP+ = L-glutamate-5-phosphate + NADPH + H+ 6 G6PDA glucosamine-6-phosphate deaminase [c] : gam6p + h2o --> f6p + nh4 B0678 ( GLUCOSAMINE-6-P-DEAMIN-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) GLUCOSAMINE-6-P-DEAMIN-RXN :gene-match H2O + D-glucosamine-6-phosphate = D-fructose-6-phosphate + ammonia AMMONIA nh4 3 G6PDH2r glucose 6-phosphate dehydrogenase [c] : g6p + nadp <==> 6pgl + h + nadph B1852 ( GLU6PDEHYDROG-RXN ) GLU6PDEHYDROG-RXN :gene-match beta-D-glucose-6-phosphate + NADP+ = D-glucono-delta-lactone-6-phosphate + NADPH + H+ 5 G6PP glucose-6-phosphate phosphatase [c] : g6p + h2o --> glc-D + pi B0822 ( SUGAR-PHOSPHATASE-RXN ) ( :EXPANDED-RXN-MATCH ) SUGAR-PHOSPHATASE-RXN :gene-match H2O + a sugar phosphate = a sugar + phosphate Sugar-Phosphate, Sugar g6p, glc-D 2 G6Pt6_2pp Glucose-6-phosphate transport via phosphate antiport ( periplasm ) g6p[p] + ( 2 ) pi[c] --> g6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h pi 1 G6Ptex glucose 6-phosphate transport via diffusion ( extracellular to periplasm ) g6p[e] <==> g6p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da g6p 0 GAL1PPpp D-galactose 1-phosphatase [p] : gal1p + h2o --> gal + pi B1002 GLUCOSE-1-PHOSPHAT-RXN :gene-match H2O + alpha-D-glucose 1-phosphate -> phosphate + beta-D-glucose GLC, g1p gal, gal1p 2 GAL1Ptex D-galactose 1-phosphate transport via diffusion ( extracellular to periplasm ) gal1p[e] <==> gal1p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gal1p 0 GALabcpp D-galactose transport via ABC system ( periplasm ) atp[c] + gal[p] + h2o[c] --> adp[c] + gal[c] + h[c] + pi[c] ( B2149 AND B2150 AND B2148 ) ( ABC-18-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-18-RXN :gene-match ATP + beta-D-galactose[periplasmic space] + H2O =ADP + phosphate + beta-D-galactose[cytosol] gal-bD h, gal 4 GALBDtex beta D-galactose transport via diffusion ( extracellular to periplasm ) gal-bD[e] <==> gal-bD[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gal-bD 0 GALCTD galactarate dehydratase [c] : galct-D --> 5dh4dglc + h2o B3128 ( GALACTARDEHYDRA-RXN ) GALACTARDEHYDRA-RXN :gene-match D-galactarate -> 5-keto-4-deoxy-D-glucarate + H2O 3 GALCTND galactonate dehydratase [c] : galctn-D --> 2dh3dgal + h2o B4478 ( GALACTONDEHYDRAT-RXN ) GALACTONDEHYDRAT-RXN :gene-match D-galactonate = H2O + 2-dehydro-3-deoxy-D-galactonate 3 GALCTNLtex L-galactonate transport via diffusion ( extracellular to periplasm ) galctn-L[e] <==> galctn-L[p] ( B2215 OR B1377 OR B0929 OR B0241 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da galctn-L 0 GALCTNt2pp D-galactonate transport via proton symport ( periplasm ) galctn-D[p] + h[p] --> galctn-D[c] + h[c] B3691 ( TRANS-RXN-16 ) TRANS-RXN-16 :gene-match H+[periplasmic space] + D-galactonate[periplasmic space] =H+[cytosol] + D-galactonate[cytosol] 2 GALCTNtex D-galactonate transport via diffusion ( extracellular to periplasm ) galctn-D[e] <==> galctn-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da galctn-D 0 GALCTtex D-galactarte transport via diffusion ( extracellular to periplasm ) galct-D[e] <==> galct-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da galct-D 0 GALKr galactokinase [c] : atp + gal <==> adp + gal1p + h ( B0757 OR B2045 ) ( GALACTOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GALACTOKIN-RXN :gene-match D-galactose + ATP = alpha-D-galactose 1-phosphate + ADP h 4 GALM2pp aldose-1-epimerase [p] : gal-bD --> gal B0756 ALDOSE1EPIM-RXN :gene-match beta-D-galactose = alpha-D-galactose ALPHA-D-GALACTOSE gal 1 GALS3 a-galactosidase ( melibiose ) [c] : h2o + melib --> gal + glc-D B4119 ( ALPHAGALACTOSID-RXN ) ALPHAGALACTOSID-RXN :gene-match H2O + melibiose = beta-D-glucose + beta-D-galactose GLC, gal-bD gal, glc-D 2 GALT1 galactosyltransferase I ( LPS core synthesis ) [c] : gicolipa + udpg --> gagicolipa + h + udp B3628 ( :UNMAPPED-CPDS ) RXN0-5124 :gene-match glucosyl-heptosyl3-KDO2-lipid A-bisphosphate + UDP-galactose = galactosyl-glucosyl-heptosyl3-KDO2-lipid A-bisphosphate + UDP UDP-GLACTOSE, CPD0-936, CPD0-935 udpg, gagicolipa, gicolipa, h 1 GALt2pp D-galactose transport in via proton symport ( periplasm ) gal[p] + h[p] --> gal[c] + h[c] B2943 ( TRANS-RXN-21 ) TRANS-RXN-21 :gene-match H+[periplasmic space] + beta-D-galactose[periplasmic space] =H+[cytosol] + beta-D-galactose[cytosol] gal-bD gal 1 GALtex D-galactose transport via diffusion ( extracellular to periplasm ) gal[e] <==> gal[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gal 0 GALTptspp Galactitol transport via PEP:Pyr PTS ( periplasm ) galt[p] + pep[c] --> galt1p[c] + pyr[c] ( B2094 AND B2093 AND B2092 AND B2415 AND B2416 ) ( TRANS-RXN-161 ) TRANS-RXN-161 :gene-match phosphoenolpyruvate + galactitol[periplasmic space] =galactitol-1-phosphate[cytosol] + pyruvate 4 GALTtex Galactitol transport via diffusion ( extracellular to periplasm ) galt[e] <==> galt[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da galt 0 GALUi UTP-glucose-1-phosphate uridylyltransferase ( irreversible ) [c] : g1p + h + utp --> ppi + udpg B1236 ( GLUC1PURIDYLTRANS-RXN ) ( ( LEFT REMOVE PROTON ) ) GLUC1PURIDYLTRANS-RXN :gene-match alpha-D-glucose 1-phosphate + UTP -> UDP-D-glucose + diphosphate h 4 GALURt2rpp "D-galacturonate transport via proton symport, reversible ( periplasm )" galur[p] + h[p] <==> galur[c] + h[c] B3093 ( TRANS-RXN-123 ) TRANS-RXN-123 :gene-match H+[periplasmic space] + galacturonate[periplasmic space] =galacturonate[cytosol] + H+[cytosol] 2 GALURtex D-galacturonate transport via diffusion ( extracellular to periplasm ) galur[e] <==> galur[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da galur 0 GAM6Pt6_2pp D-Glucosamine 6-phosphate transport via phosphate antiport ( periplasm ) gam6p[p] + ( 2 ) pi[c] --> gam6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h, g6p gam6p, pi 0 GAMAN6Ptex D-glucosamine 6-phosphate transport via diffusion ( extracellular to periplasm ) gam6p[e] <==> gam6p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gam6p 0 GAMptspp D-glucosamine transport via PEP:Pyr PTS ( periplasm ) gam[p] + pep[c] --> gam6p[c] + pyr[c] ( B1817 AND B1818 AND B1819 AND B2415 AND B2416 ) ( TRANS-RXN-167A ) TRANS-RXN-167A :gene-match phosphoenolpyruvate + glucosamine[periplasmic space] =D-glucosamine-6-phosphate[cytosol] + pyruvate 4 GAMtex D-glucosamine transport via diffusion ( extracellular to periplasm ) gam[e] <==> gam[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gam 0 GAPD glyceraldehyde-3-phosphate dehydrogenase [c] : g3p + nad + pi <==> 13dpg + h + nadh B1779 ( GAPOXNPHOSPHN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GAPOXNPHOSPHN-RXN :gene-match D-glyceraldehyde-3-phosphate + phosphate + NAD+ = 1,3-diphosphateglycerate + NADH h 5 GARFT phosphoribosylglycinamide formyltransferase [c] : 10fthf + gar <==> fgam + h + thf B2500 ( GART-RXN ) ( ( RIGHT REMOVE PROTON ) ) GART-RXN :gene-match N10-formyl-THF + 5-phospho-ribosyl-glycineamide = tetrahydrofolate + 5'-phosphoribosyl-N-formylglycineamide h 4 GART GAR transformylase-T [c] : atp + for + gar --> adp + fgam + h + pi B1849 ( GARTRANSFORMYL2-RXN ) ( ( RIGHT REMOVE PROTON ) ) GARTRANSFORMYL2-RXN :gene-match 5-phospho-ribosyl-glycineamide + formate + ATP = phosphate + 5'-phosphoribosyl-N-formylglycineamide + ADP h 6 GBBTNtex gamma-butyrobetaine transport via diffusion ( extracellular to periplasm ) gbbtn[e] <==> gbbtn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gbbtn 0 GCALDD Glycolaldehyde dehydrogenase [c] : gcald + h2o + nad --> glyclt + ( 2 ) h + nadh B1415 ( GLYCOLALD-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLYCOLALD-DEHYDROG-RXN :gene-match H2O + NAD+ + glycolaldehyde -> NADH + glycolate h 5 GDMANE GDP-4-dehydro-6-deoxy-D-mannose epimerase [c] : gdpddman --> gdpofuc B2052 ( :UNMAPPED-CPDS ) 1.1.1.271-RXN :gene-match NADP+ + GDP-L-fucose = NADPH + GDP-4-dehydro-6-deoxy-D-mannose nadph, nadp, gdpfuc gdpofuc 1 GDPDPK GDP diphosphokinase [c] : atp + gdp --> amp + h + ppgpp ( B2784 OR B3650 ) ( GDPPYPHOSKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GDPPYPHOSKIN-RXN :gene-match ATP + GDP = AMP + guanosine 5'-diphosphate,3'-diphosphate h 4 GDPMNH GDP-mannose mannosyl hydrolase [c] : gdpmann + h2o --> gdp + h + man B2051 ( GDPMANMANHYDRO-RXN ) ( ( RIGHT REMOVE PROTON ) ) GDPMANMANHYDRO-RXN :gene-match GDP-D-mannose + H2O = GDP + mannose h 4 GDPMNP GDP-mannose phyrophosphatase [c] : gdpmann + h2o --> gmp + ( 2 ) h + man1p B2467 ( RXN0-5108 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5108 :gene-match GDP-D-mannose + H2O = GMP + alpha-D-mannose 1-phosphate h 4 GDPtex GDP transport via diffusion ( extracellular to periplasm ) gdp[e] <==> gdp[p] ( B0241 OR B1377 OR B2215 OR B0929 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gdp 0 GF6PTA glutamine-fructose-6-phosphate transaminase [c] : f6p + gln-L --> gam6p + glu-L B3729 ( L-GLN-FRUCT-6-P-AMINOTRANS-RXN ) L-GLN-FRUCT-6-P-AMINOTRANS-RXN :gene-match D-fructose-6-phosphate + L-glutamine -> D-glucosamine-6-phosphate + L-glutamate 4 GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase [c] : ggbutal + h2o + nadp <==> gg4abut + ( 2 ) h + nadph B1300 ( RXN0-3922 ) ( :EXPANDED-RXN-MATCH ) RXN0-3922 :gene-match gamma-glutamyl-gamma-aminobutyraldehyde + NAD(P)+ + H2O = gamma-glutamyl-gamma-aminobutyrate + NAD(P)H + H+ NAD(P), NAD(P)H nadph, nadp 4 GGGABAH gamma-glutamyl-gamma-aminobutyric acid hydrolase [c] : gg4abut + h2o --> 4abut + glu-L B1298 ( RXN0-3942 ) RXN0-3942 :gene-match gamma-glutamyl-gamma-aminobutyrate + H2O = 4-aminobutyrate + L-glutamate 4 GGPTRCO gamma glutamyl putrescine oxidase [c] : ggptrc + h2o + o2 --> ggbutal + h2o2 + nh4 B1301 ( RXN0-3921 ) RXN0-3921 :gene-match gamma-glutamyl-L-putrescine + H2O + O2 = gamma-glutamyl-gamma-aminobutyraldehyde + H2O2 + NH4+ 6 GGPTRCS gamma glutamyl putrescine synthase [c] : atp + glu-L + ptrc --> adp + ggptrc + h + pi B1297 ( RXN0-3901 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-3901 :gene-match putrescine + L-glutamate + ATP = gamma-glutamyl-L-putrescine + ADP + phosphate h 6 GHMT2r "glycine hydroxymethyltransferase, reversible" [c] : ser-L + thf <==> gly + h2o + mlthf B2551 ( GLYOHMETRANS-RXN ) GLYOHMETRANS-RXN :gene-match 5,10-methylene-THF + glycine + H2O = L-serine + tetrahydrofolate 5 GK1 guanylate kinase ( GMP:ATP ) [c] : atp + gmp <==> adp + gdp B3648 ( GUANYL-KIN-RXN ) GUANYL-KIN-RXN :gene-match GMP + ATP = GDP + ADP 4 GLBRAN2 "1,4-alpha-glucan branching enzyme ( glycogen -> bglycogen )" [c] : glycogen --> bglycogen B3432 ( GLYCOGEN-BRANCH-RXN ) GLYCOGEN-BRANCH-RXN :gene-match a 1,4-alpha-D-glucan = a glycogen 14glucan bglycogen 1 GLCabcpp D-glucose transport via ABC system ( periplasm ) atp[c] + glc-D[p] + h2o[c] --> adp[c] + glc-D[c] + h[c] + pi[c] ( B2149 AND B2150 AND B2148 ) ABC-18-RXN :gene-match ATP + beta-D-galactose[periplasmic space] + H2O =ADP + phosphate + beta-D-galactose[cytosol] gal-bD h, glc-D 4 GLCATr D-glucose O-acetyltransferase [c] : accoa + glc-D <==> acglc-D + coa B0459 MALTACETYLTRAN-RXN :gene-match maltose + acetyl-CoA = acetylmaltose + coenzyme A acmalt, malt acglc-D, glc-D 2 GLCDpp Glucose dehydrogenase ( ubiquinone-8 as acceptor ) ( periplasm ) glc-D[p] + h2o[p] + q8[c] --> glcn[p] + h[p] + q8h2[c] B0124 GLUCDEHYDROG-RXN :gene-match beta-D-glucose + a ubiquinone = glucono-delta-lactone + a ubiquinol Ubiquinones, GLC, GLC-D-LACTONE, Ubiquinols q8, glcn, q8h2, h2o, h, glc-D 0 GLCNt2rpp "D-gluconate transport via proton symport, reversible ( periplasm )" glcn[p] + h[p] <==> glcn[c] + h[c] ( B3415 OR B4265 OR B4321 OR B4476 ) TRANS-RXN-81 :gene-match H+[periplasmic space] + fructuronate[periplasmic space] =H+[cytosol] + fructuronate[cytosol] fruur glcn 1 GLCNtex D-gluconate transport via diffusion ( extracellular to periplasm ) glcn[e] <==> glcn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glcn 0 GLCP glycogen phosphorylase [c] : glycogen + pi --> g1p ( B3428 OR B3417 ) MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790, maltttr glycogen 2 GLCP2 glycogen phosphorylase [c] : bglycogen + pi --> g1p ( B3428 OR B3417 ) GLYMALTOPHOSPHORYL-RXN :gene-match a glycogen + phosphate = maltotetraose + alpha-D-glucose 1-phosphate maltttr 3 GLCptspp D-glucose transport via PEP:Pyr PTS ( periplasm ) glc-D[p] + pep[c] --> g6p[c] + pyr[c] ( ( B2417 AND B1621 AND B2415 AND B2416 ) OR ( B2417 AND B1101 AND B2415 AND B2416 ) OR ( B1817 AND B1818 AND B1819 AND B2415 AND B2416 ) ) ( TRANS-RXN-157 ) TRANS-RXN-157 :gene-match phosphoenolpyruvate + beta-D-glucose[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + pyruvate GLC glc-D 3 GLCRAL 5-dehydro-4-deoxyglucarate aldolase [c] : 5dh4dglc --> 2h3oppan + pyr B3126 ( KDGALDOL-RXN ) KDGALDOL-RXN :gene-match 5-keto-4-deoxy-D-glucarate = pyruvate + tartronate semialdehyde 3 GLCRD glucarate dehydratase [c] : glcr --> 5dh4dglc + h2o ( B2787 OR B2788 ) ( GLUCARDEHYDRA-RXN ) GLUCARDEHYDRA-RXN :gene-match D-glucarate -> 5-keto-4-deoxy-D-glucarate + H2O 3 GLCRtex D-glucarate transport via diffusion ( extracellular to periplasm ) glcr[e] <==> glcr[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glcr 0 GLCS1 glycogen synthase ( ADPGlc ) [c] : adpglc --> adp + glycogen + h B3429 GLYCOGENSYN-RXN :gene-match (1,4-alpha-D-glucosyl)(N) + ADP-D-glucose = ADP + (1,4-alpha-D-glucosyl)(n+1) 14glucan h, glycogen 2 GLCt2pp D-glucose transport in via proton symport ( periplasm ) glc-D[p] + h[p] --> glc-D[c] + h[c] B2943 TRANS-RXN-21 :gene-match H+[periplasmic space] + beta-D-galactose[periplasmic space] =H+[cytosol] + beta-D-galactose[cytosol] gal-bD glc-D 1 GLCtex glucose transport via diffusion ( extracellular to periplasm ) glc-D[e] <==> glc-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glc-D 0 GLCtexi D-glucoseMaltotriose transport via diffusion ( extracellular to periplasm ) irreversible glc-D[e] --> glc-D[p] B4036 ( RXN0-1683 ) RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt glc-D 0 GLCTR1 glucosyltransferase I ( LPS core synthesis ) [c] : icolipa + udpg --> gicolipa + h + udp B3631 ( :UNMAPPED-CPDS ) RXN0-5120 :gene-match heptosyl2-KDO2-lipid A + UDP-D-glucose = glucosyl-heptosyl2-KDO2-lipid A + UDP CPD0-932, hhlipa h, icolipa, gicolipa 2 GLCTR2 glucosyltransferase II ( LPS core synthesis ) [c] : gagicolipa + udpg --> ggagicolipa + h + udp B3627 ( :UNMAPPED-CPDS ) RXN0-5125 :gene-match galactosyl-glucosyl-heptosyl3-KDO2-lipid A-bisphosphate + UDP-D-glucose = galactosyl-glucosyl2-heptosyl3-KDO2-lipid A-bisphosphate + UDP CPD0-936, CPD0-937 gagicolipa, h, ggagicolipa 2 GLCTR3 glucosyltransferase III ( LPS core synthesis ) [c] : ggagicolipa + udpg --> gggagicolipa + h + udp B3626 ( :UNMAPPED-CPDS ) 2.4.1.58-RXN :gene-match a lipopolysaccharide + UDP-D-glucose = D-GLUCOSYL-LIPOPOLYSACCHARIDE + UDP D-GLUCOSYL-LIPOPOLYSACCHARIDE, Lipopolysaccharides gggagicolipa, h, ggagicolipa 2 GLCUR1Ptex D-glucuronate 1-phosphate transport via diffusion ( extracellular to periplasm ) glcur1p[e] <==> glcur1p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glcur1p 0 GLCURt2rpp "D-glucuronate transport via proton symport, reversible ( periplasm )" glcur[p] + h[p] <==> glcur[c] + h[c] ( B3909 OR B3093 ) ( TRANS-RXN-35 ) TRANS-RXN-35 :gene-match H+[periplasmic space] + glucuronate[periplasmic space] =H+[cytosol] + glucuronate[cytosol] 2 GLCURtex D-glucuronat transport via diffusion ( extracellular to periplasm ) glcur[e] <==> glcur[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glcur 0 GLGC glucose-1-phosphate adenylyltransferase [c] : atp + g1p + h --> adpglc + ppi B3430 ( GLUC1PADENYLTRANS-RXN ) ( ( LEFT REMOVE PROTON ) ) GLUC1PADENYLTRANS-RXN :gene-match alpha-D-glucose 1-phosphate + ATP -> ADP-D-glucose + diphosphate h 4 GLNabcpp L-glutamine transport via ABC system ( periplasm ) atp[c] + gln-L[p] + h2o[c] --> adp[c] + gln-L[c] + h[c] + pi[c] ( B0811 AND B0810 AND B0809 ) ( ABC-12-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-12-RXN :gene-match ATP + L-glutamine[periplasmic space] + H2O =ADP + phosphate + L-glutamine[cytosol] h 5 GLNS glutamine synthetase [c] : atp + glu-L + nh4 --> adp + gln-L + h + pi ( B3870 OR B1297 ) ( GLUTAMINESYN-RXN ) ( ( LEFT SUBSTITUTE AMMONIA AMMONIUM ) ( RIGHT REMOVE PROTON ) ) GLUTAMINESYN-RXN :gene-match ammonia + L-glutamate + ATP -> L-glutamine + ADP + phosphate AMMONIA h, nh4 5 GLNtex L-glutamine transport via diffusion ( extracellular to periplasm ) gln-L[e] <==> gln-L[p] ( B0929 OR B1377 OR B2215 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gln-L 0 GLNTRS Glutaminyl-tRNA synthetase [c] : atp + gln-L + trnagln --> amp + glntrna + ppi B0680 ( GLUTAMINE--TRNA-LIGASE-RXN ) GLUTAMINE--TRNA-LIGASE-RXN :gene-match tRNAgln + L-glutamine + ATP = L-glutaminyl-tRNAgln + diphosphate + AMP 6 GLTPD Galactitol-1-phosphate dehydrogenase [c] : galt1p + nad <==> h + nadh + tag6p-D B2091 ( GALACTITOLPDEHYD-RXN ) ( ( RIGHT REMOVE PROTON ) ) GALACTITOLPDEHYD-RXN :gene-match galactitol-1-phosphate + NAD+ = tagatose-6-phosphate + NADH h 4 GLU5K glutamate 5-kinase [c] : atp + glu-L --> adp + glu5p B0242 ( GLUTKIN-RXN ) GLUTKIN-RXN :gene-match L-glutamate + ATP -> L-glutamate-5-phosphate + ADP 4 GLUabcpp L-glutamate transport via ABC system ( periplasm ) atp[c] + glu-L[p] + h2o[c] --> adp[c] + glu-L[c] + h[c] + pi[c] ( B0655 AND B0654 AND B0653 AND B0652 ) ( ABC-13-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-13-RXN :gene-match ATP + L-glutamate[periplasmic space] + H2O =ADP + phosphate + L-glutamate[cytosol] h 5 GLUABUTt7pp 4-aminobutyrate/glutamate antiport ( periplasm ) 4abut[c] + glu-L[p] <==> 4abut[p] + glu-L[c] B1492 ( TRANS-RXN-261 ) TRANS-RXN-261 :gene-match 4-aminobutyrate[cytosol] + L-glutamate[periplasmic space] =L-glutamate[cytosol] + 4-aminobutyrate[periplasmic space] 2 GLUCYS gamma-glutamylcysteine synthetase [c] : atp + cys-L + glu-L --> adp + glucys + h + pi B2688 ( GLUTCYSLIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLUTCYSLIG-RXN :gene-match L-cysteine + L-glutamate + ATP = L-gamma-glutamylcysteine + phosphate + ADP h 6 GLUDC Glutamate Decarboxylase [c] : glu-L + h --> 4abut + co2 ( B3517 OR B1493 ) ( GLUTDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) GLUTDECARBOX-RXN :gene-match L-glutamate -> CO2 + 4-aminobutyrate h 3 GLUDy glutamate dehydrogenase ( NADP ) [c] : glu-L + h2o + nadp <==> akg + h + nadph + nh4 B1761 GLUTDEHYD-RXN :gene-match L-glutamate + H2O + NADP+ = alpha-ketoglutarate + ammonia + NADPH AMMONIA h, nh4 5 GLUN glutaminase [c] : gln-L + h2o --> glu-L + nh4 ( B1812 OR B0485 OR B1524 ) ( GLUTAMIN-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) GLUTAMIN-RXN :gene-match L-glutamine + H2O = L-glutamate + ammonia AMMONIA nh4 3 GLUNpp glutaminase [p] : gln-L + h2o --> glu-L + nh4 B2957 ASPARAGHYD-RXN :gene-match L-asparagine + H2O = L-aspartate + ammonia asn-L, AMMONIA, asp-L nh4, glu-L, gln-L 1 GLUPRT glutamine phosphoribosyldiphosphate amidotransferase [c] : gln-L + h2o + prpp --> glu-L + ppi + pram B2312 ( PRPPAMIDOTRANS-RXN ) PRPPAMIDOTRANS-RXN :gene-match 5-phospho-beta-D-ribosyl-amine + diphosphate + L-glutamate -> 5-phosphoribosyl 1-pyrophosphate + L-glutamine + H2O 6 GLUR glutamate racemase [c] : glu-D <==> glu-L B3967 ( GLUTRACE-RXN ) GLUTRACE-RXN :gene-match L-glutamate = D-glutamate 2 GLUSy glutamate synthase ( NADPH ) [c] : akg + gln-L + h + nadph --> ( 2 ) glu-L + nadp ( B3212 AND B3213 ) ( GLUTAMATESYN-RXN ) ( ( LEFT REMOVE PROTON ) ) GLUTAMATESYN-RXN :gene-match 2 L-glutamate + NADP+ = L-glutamine + alpha-ketoglutarate + NADPH h 5 GLUt2rpp "L-glutamate transport via proton symport, reversible ( periplasm )" glu-L[p] + h[p] <==> glu-L[c] + h[c] B4077 ( TRANS-RXN-162 ) TRANS-RXN-162 :gene-match H+[periplasmic space] + L-glutamate[periplasmic space] =H+[cytosol] + L-glutamate[cytosol] 2 GLUt4pp Na+/glutamate symport ( periplasm ) glu-L[p] + na1[p] --> glu-L[c] + na1[c] B3653 ( TRANS-RXN-122 ) TRANS-RXN-122 :gene-match Na+[periplasmic space] + L-glutamate[periplasmic space] =Na+[cytosol] + L-glutamate[cytosol] 2 GLUtex L-glutamate transport via diffusion ( extracellular to periplasm ) glu-L[e] <==> glu-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glu-L 0 GLUTRR glutamyl-tRNA reductase [c] : glutrna + h + nadph --> glu1sa + nadp + trnaglu B1210 ( GLUTRNAREDUCT-RXN ) GLUTRNAREDUCT-RXN :gene-match glutamate-1-semialdehyde + NADP+ + tRNAGlu = L-glutamyl-tRNAGlu + NADPH + H+ 6 GLUTRS Glutamyl-tRNA synthetase [c] : atp + glu-L + trnaglu --> amp + glutrna + ppi B2400 ( GLURS-RXN ) GLURS-RXN :gene-match tRNAGlu + L-glutamate + ATP = L-glutamyl-tRNAGlu + diphosphate + AMP 6 GLXCL glyoxalate carboligase [c] : ( 2 ) glx + h --> 2h3oppan + co2 B0507 ( GLYOCARBOLIG-RXN ) ( ( LEFT REMOVE PROTON ) ) GLYOCARBOLIG-RXN :gene-match 2 glyoxylate = CO2 + tartronate semialdehyde h 3 GLYALDtex Glyceraldehyde transport via diffusion ( extracellular to periplasm ) glyald[e] <==> glyald[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyald 0 GLYALDtpp Glyceraldehyde facilitated diffusion ( periplasm ) glyald[p] <==> glyald[c] B3927 TRANS-RXN-131 :gene-match glycerol[periplasmic space] =glycerol[cytosol] glyc glyald 0 GLYAT glycine C-acetyltransferase [c] : accoa + gly <==> 2aobut + coa B3617 ( AKBLIG-RXN ) AKBLIG-RXN :gene-match glycine + acetyl-CoA = 2-amino-3-oxobutanoate + coenzyme A 4 GLYBtex Glycine betaine transport via diffusion ( extracellular to periplasm ) glyb[e] <==> glyb[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyb 0 GLYC2Ptex Glycerol-2-phosphate transport via diffusion ( extracellular to periplasm ) glyc2p[e] <==> glyc2p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyc2p 0 GLYC3Pabcpp sn-Glycerol 3-phosphate transport via ABC system ( periplasm ) atp[c] + glyc3p[p] + h2o[c] --> adp[c] + glyc3p[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ( ABC-34-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] h 5 GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter ( periplasm ) glyc3p[p] + pi[c] --> glyc3p[c] + pi[p] B2240 TRANS-RXN-22 :gene-match H+[periplasmic space] + sn-glycerol-3-phosphate[periplasmic space] =H+[cytosol] + sn-glycerol-3-phosphate[cytosol] h pi 1 GLYC3Ptex Glycerol-3-phosphate transport via diffusion ( extracellular to periplasm ) glyc3p[e] <==> glyc3p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyc3p 0 GLYCAtex D-glycerate transport via diffusion ( extracellular to periplasm ) glyc-R[e] <==> glyc-R[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyc-R 0 GLYCDx Glycerol dehydrogenase [c] : glyc + nad --> dha + h + nadh B3945 ( GLYCDEH-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLYCDEH-RXN :gene-match NAD+ + glycerol = NADH + dihydroxy-acetone h 4 GLYCK glycerate kinase [c] : atp + glyc-R --> 3pg + adp + h B0514 ( GLY3KIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLY3KIN-RXN :gene-match glycerate + ATP = 3-phosphoglycerate + ADP h 4 GLYCK2 glycerate kinase [c] : atp + glyc-R --> 2pg + adp + h B3124 ( GKI-RXN ) ( ( RIGHT REMOVE PROTON ) ) GKI-RXN :gene-match ATP + glycerate = 2-phosphoglycerate + ADP h 4 GLYCL Glycine Cleavage System [c] : gly + nad + thf --> co2 + mlthf + nadh + nh4 ( B2904 AND B2903 AND B2905 AND B0116 ) ( GCVMULTI-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) GCVMULTI-RXN :gene-match NAD+ + glycine + tetrahydrofolate = 5,10-methylene-THF + ammonia + CO2 + NADH AMMONIA nh4 6 GLYCLTDx Glycolate dehydrogenase ( NAD ) [c] : glx + h + nadh --> glyclt + nad ( B3553 OR B1033 ) ( GLYCOLATE-REDUCTASE-RXN ) ( :METACYC ( LEFT REMOVE PROTON ) ) GLYOXYLATE-REDUCTASE-(NADP+)-RXN :gene-match glycolate + NADP+ = NADPH + glyoxylate nadph, nadp h, nadh, nad 2 GLYCLTDy Glycolate dehydrogenase ( NADP ) [c] : glx + h + nadph --> glyclt + nadp ( B3553 OR B1033 ) ( |GLYOXYLATE-REDUCTASE-( NADP+ )-RXN| ) ( ( LEFT REMOVE PROTON ) ) GLYOXYLATE-REDUCTASE-(NADP+)-RXN :gene-match glycolate + NADP+ = NADPH + glyoxylate h 4 GLYCLTt2rpp "glycolate transport via proton symport, reversible ( periplasm )" glyclt[p] + h[p] <==> glyclt[c] + h[c] ( B3603 OR B2975 ) ( TRANS-RXN-105 ) TRANS-RXN-105 :gene-match H+[periplasmic space] + glycolate[periplasmic space] =H+[cytosol] + glycolate[cytosol] 2 GLYCLTt4pp glycolate transport via sodium symport ( periplasm ) glyclt[p] + na1[p] --> glyclt[c] + na1[c] B4067 RXN0-5111 :gene-match glycolate[periplasmic space] =glycolate[cytosol] na1 1 GLYCLTtex glycolate transport via diffusion ( extracellular to periplasm ) glyclt[e] <==> glyclt[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyclt 0 GLYCtex glycerol transport via diffusion ( extracellular to periplasm ) glyc[e] <==> glyc[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da glyc 0 GLYCtpp glycerol transport via channel ( periplasm ) glyc[c] <==> glyc[p] B3927 ( TRANS-RXN-131 ) TRANS-RXN-131 :gene-match glycerol[periplasmic space] =glycerol[cytosol] 1 GLYK glycerol kinase [c] : atp + glyc --> adp + glyc3p + h B3926 ( GLYCEROL-KIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLYCEROL-KIN-RXN :gene-match glycerol + ATP -> sn-glycerol-3-phosphate + ADP h 4 GLYOX hydroxyacylglutathione hydrolase [c] : h2o + lgt-S --> gthrd + h + lac-D B0212 ( GLYOXII-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLYOXII-RXN :gene-match S-lactoyl-glutathione + H2O = glutathione + D-lactate h 4 GLYt2pp glycine transport in via proton symport ( periplasm ) gly[p] + h[p] --> gly[c] + h[c] ( B1801 OR B4208 ) ( TRANS-RXN-62B ) TRANS-RXN-62B :gene-match H+[periplasmic space] + glycine[periplasmic space] =H+[cytosol] + glycine[cytosol] 2 GLYt4pp glycine transport in via sodium symport ( periplasm ) gly[p] + na1[p] --> gly[c] + na1[c] B0007 TRANS-RXN-125 :gene-match Na+[periplasmic space] + L-alanine[periplasmic space] =Na+[cytosol] + L-alanine[cytosol] ala-L gly 1 GLYtex Glycine transport via diffusion ( extracellular to periplasm ) gly[e] <==> gly[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gly 0 GLYTRS Glycyl-tRNA synthetase [c] : atp + gly + trnagly --> amp + glytrna + ppi ( B3559 AND B3560 ) ( GLYCINE--TRNA-LIGASE-RXN ) GLYCINE--TRNA-LIGASE-RXN :gene-match tRNAgly + glycine + ATP -> glycyl-tRNAgly + diphosphate + AMP 6 GMAND GDP-D-mannose dehydratase [c] : gdpmann --> gdpddman + h2o B2053 ( GDPMANDEHYDRA-RXN ) GDPMANDEHYDRA-RXN :gene-match GDP-D-mannose -> H2O + GDP-4-dehydro-6-deoxy-D-mannose 3 GMHEPAT D-glycero-D-manno-hepose 1-phosphate adenyltransferase [c] : atp + gmhep1p + h --> adphep-DD + ppi B3052 ( RXN0-4342 ) ( ( LEFT REMOVE PROTON ) ) RXN0-4342 :gene-match D-beta-D-heptose-1-phosphate + ATP = ADP-D-glycero-D-manno-heptose + diphosphate h 4 GMHEPK D-glycero-D-manno-heptose 7-phosphate kinase [c] : atp + gmhep7p --> adp + gmhep17bp + h B3052 ( RXN0-4341 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-4341 :gene-match D-alpha,beta-D-heptose-7-phosphate + ATP = D-beta-D-heptose-1,7-bisphosphate + ADP h 4 GMHEPPA "D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase" [c] : gmhep17bp + h2o --> gmhep1p + pi B0200 RXN0-4361 :gene-match D-beta-D-heptose-1,7-bisphosphate = D-beta-D-heptose-1-phosphate + phosphate h2o 3 GMPR GMP reductase [c] : gmp + ( 2 ) h + nadph --> imp + nadp + nh4 B0104 ( GMP-REDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) GMP-REDUCT-RXN :gene-match ammonia + inosine-5'-phosphate + NADP+ -> GMP + NADPH AMMONIA h, nh4 4 GMPS2 GMP synthase [c] : atp + gln-L + h2o + xmp --> amp + glu-L + gmp + ( 2 ) h + ppi B2507 ( GMP-SYN-GLUT-RXN ) ( ( RIGHT REMOVE PROTON ) ) GMP-SYN-GLUT-RXN :gene-match H2O + L-glutamine + xanthosine-5-phosphate + ATP = L-glutamate + GMP + diphosphate + AMP h 8 GMPtex GMP transport via diffusion ( extracellular to periplasm ) gmp[e] <==> gmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gmp 0 GND phosphogluconate dehydrogenase [c] : 6pgc + nadp --> co2 + nadph + ru5p-D B2029 ( 6PGLUCONDEHYDROG-RXN ) ( :EXPANDED-RXN-MATCH ) 6PGLUCONDEHYDROG-RXN :gene-match 6-phospho-D-gluconate + NAD(P)+ = D-ribulose-5-phosphate + CO2 + NAD(P)H NAD(P), NAD(P)H nadph, nadp 3 GNK gluconokinase [c] : atp + glcn --> 6pgc + adp + h ( B4268 OR B3437 ) ( GLUCONOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLUCONOKIN-RXN :gene-match ATP + gluconate = ADP + 6-phospho-D-gluconate h 4 GOFUCR GDP-4-oxo-L-fucose reductase [c] : gdpofuc + h + nadph --> gdpfuc + nadp B2052 ( :UNMAPPED-CPDS ) 1.1.1.271-RXN :gene-match NADP+ + GDP-L-fucose = NADPH + GDP-4-dehydro-6-deoxy-D-mannose gdpddman h, gdpofuc 3 GP4GH Gp4G hydrolase [c] : gp4g + h2o --> ( 2 ) gdp + ( 2 ) h B0049 3.6.1.41-RXN :gene-match H2O + P(1),P(4)-bis(5'-adenosyl)tetraphosphate -> 2 ADP ap4a, adp gdp, h, gp4g 1 GPDDA1 Glycerophosphodiester phosphodiesterase ( Glycerophosphocholine ) [c] : g3pc + h2o --> chol + glyc3p + h B3449 ( 3.1.4.2-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols g3pc, chol, h 2 GPDDA1pp Glycerophosphodiester phosphodiesterase ( Glycerophosphocholine ) [p] : g3pc + h2o --> chol + glyc3p + h B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols g3pc, chol, h 2 GPDDA2 Glycerophosphodiester phosphodiesterase ( Glycerophosphoethanolamine ) [c] : g3pe + h2o --> etha + glyc3p + h B3449 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols h, etha, g3pe 2 GPDDA2pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoethanolamine ) [p] : g3pe + h2o --> etha + glyc3p + h B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols h, etha, g3pe 2 GPDDA3 Glycerophosphodiester phosphodiesterase ( Glycerophosphoserine ) [c] : g3ps + h2o --> glyc3p + h + ser-L B3449 ( :UNMAPPED-CPDS ) GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols g3ps, ser-L, h 2 GPDDA3pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoserine ) [p] : g3ps + h2o --> glyc3p + h + ser-L B2239 ( :UNMAPPED-CPDS ) GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols g3ps, ser-L, h 2 GPDDA4 Glycerophosphodiester phosphodiesterase ( Glycerophosphoglycerol ) [c] : g3pg + h2o --> glyc + glyc3p + h B3449 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols glyc, g3pg, h 2 GPDDA4pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoglycerol ) [p] : g3pg + h2o --> glyc + glyc3p + h B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols glyc, g3pg, h 2 GPDDA5 Glycerophosphodiester phosphodiesterase ( Glycerophosphoinositol ) [c] : g3pi + h2o --> glyc3p + h + inost B3449 ( 3.1.4.44-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols inost, h, g3pi 2 GPDDA5pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoinositol ) [p] : g3pi + h2o --> glyc3p + h + inost B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols inost, h, g3pi 2 GRTT geranyltranstransferase [c] : grdp + ipdp --> frdp + ppi B0421 ( FPPSYN-RXN ) FPPSYN-RXN :gene-match geranyl-PP + delta3-isopentenyl-PP = diphosphate + trans, trans-farnesyl diphosphate 4 GSNK guanosine kinase [c] : atp + gsn --> adp + gmp + h B0477 ( GUANOSINEKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GUANOSINEKIN-RXN :gene-match guanosine + ATP -> GMP + ADP h 4 GSNt2pp guanosine transport in via proton symport ( periplasm ) gsn[p] + h[p] --> gsn[c] + h[c] B2964 ( TRANS-RXN-108 ) ( :EXPANDED-RXN-MATCH ) TRANS-RXN-108 :gene-match H+[periplasmic space] + a nucleoside[periplasmic space] =H+[cytosol] + a nucleoside[cytosol] Nucleosides gsn 1 GSNtex guanosine transport via diffusion ( extracellular to periplasm ) gsn[e] <==> gsn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gsn 0 GSPMDA Glutathionylspermidine amidase [c] : gtspmd + h2o --> gthrd + spmd B2988 ( GSPAMID-RXN ) GSPAMID-RXN :gene-match glutathionylspermidine + H2O = glutathione + spermidine 4 GSPMDS Glutathionylspermidine synthetase [c] : atp + gthrd + spmd --> adp + gtspmd + h + pi B2988 ( GSPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GSPSYN-RXN :gene-match spermidine + glutathione + ATP = glutathionylspermidine + ADP + phosphate h 6 GTHOr glutathione oxidoreductase [c] : gthox + h + nadph <==> ( 2 ) gthrd + nadp B3500 ( GLUTATHIONE-REDUCT-NADPH-RXN ) GLUTATHIONE-REDUCT-NADPH-RXN :gene-match 2 glutathione + NADP+ -> glutathione disulfide + NADPH + H+ 5 GTHOXtex glutathione ( ox ) transport via diffusion ( extracellular to periplasm ) gthox[e] <==> gthox[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gthox 0 GTHRDabc2pp glutathione export via ABC system ( cytoplasm to periplasm ) atp[c] + gthrd[c] + h2o[c] --> adp[c] + gthrd[p] + h[c] + pi[c] ( B0886 AND B0887 ) RXN0-21 :gene-match glutathione[cytoplasm] + ATP + H2O =glutathione[periplasmic space] + ADP + phosphate h 5 GTHRDabcpp Reduced glutathione via ABC system ( periplasm ) atp[c] + gthrd[p] + h2o[c] --> adp[c] + gthrd[c] + h[c] + pi[c] ( B0829 AND B0830 AND B0831 AND B0832 ) RXN0-11 :gene-match glutathione[periplasmic space] + ATP + H2O =glutathione[cytoplasm] + ADP + phosphate h 5 GTHRDHpp glutathione hydralase ( periplasmic ) [p] : gthrd + h2o --> cgly + glu-L B3447 ( :UNMAPPED-CPDS ) GAMMA-GLUTAMYLTRANSFERASE-RXN :gene-match an amino acid + (5-L-glutamyl)-L-peptide = (5-L-glutamyl)-L-amino acid + a peptide Peptides, 5-L-GLUTAMYL-PEPTIDE, 5-L-GLUTAMYL-L-AMINO-ACID, Amino-Acid gthrd, h2o, glu-L, cgly 0 GTHRDtex glutathione transport via diffusion ( extracellular to periplasm ) gthrd[e] <==> gthrd[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gthrd 0 GTHS glutathione synthetase [c] : atp + glucys + gly --> adp + gthrd + h + pi B2947 ( GLUTATHIONE-SYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLUTATHIONE-SYN-RXN :gene-match glycine + L-gamma-glutamylcysteine + ATP = glutathione + phosphate + ADP h 6 GTPCI GTP cyclohydrolase I [c] : gtp + h2o --> ahdt + for + h B2153 ( GTP-CYCLOHYDRO-I-RXN ) ( ( RIGHT REMOVE PROTON ) ) GTP-CYCLOHYDRO-I-RXN :gene-match GTP + H2O = formate + 7,8-dihydroneopterin 3'-triphosphate h 4 GTPCII2 GTP cyclohydrolase II ( 25drapp ) [c] : gtp + ( 3 ) h2o --> 25drapp + for + ( 2 ) h + ppi B1277 ( GTP-CYCLOHYDRO-II-RXN ) ( ( RIGHT REMOVE PROTON ) ) GTP-CYCLOHYDRO-II-RXN :gene-match 3 H2O + GTP -> diphosphate + 2,5-diamino-6-(ribosylamino)-4-(3H)-pyrimidinone 5'-phosphate + formate h 5 GTPDPDP "guanosine-5'-triphosphate,3'-diphosphate diphosphatase" [c] : gdptp + h2o --> h + pi + ppgpp B3779 ( PPPGPPHYDRO-RXN ) ( ( RIGHT REMOVE PROTON ) ) PPPGPPHYDRO-RXN :gene-match H2O + guanosine 3'-diphosphate 5'-triphosphate = phosphate + guanosine 5'-diphosphate,3'-diphosphate h 4 GTPDPK GTP diphosphokinase [c] : atp + gtp --> amp + gdptp + h B2784 ( GTPPYPHOSKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GTPPYPHOSKIN-RXN :gene-match GTP + ATP = guanosine 3'-diphosphate 5'-triphosphate + AMP h 4 GTPtex GTP transport via diffusion ( extracellular to periplasm ) gtp[e] <==> gtp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da gtp 0 GUAD guanine deaminase [c] : gua + h + h2o --> nh4 + xan B2883 ( GUANINE-DEAMINASE-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) GUANINE-DEAMINASE-RXN :gene-match H2O + guanine = ammonia + xanthine AMMONIA h, nh4 3 GUAPRT guanine phosphoribosyltransferase [c] : gua + prpp --> gmp + ppi ( B0238 OR B0125 ) ( GUANPRIBOSYLTRAN-RXN ) GUANPRIBOSYLTRAN-RXN :gene-match guanine + 5-phosphoribosyl 1-pyrophosphate -> diphosphate + GMP 4 GUAt2pp guanine transport in via proton symport ( periplasm ) gua[p] + h[p] --> gua[c] + h[c] B3654 RXN-5076 :gene-match xanthine[periplasmic space] + H+[periplasmic space] =xanthine[cytosol] + H+[cytosol] xan gua 1 GUI1 glucuronate isomerase ( D-glucuronate ) [c] : glcur <==> fruur B3092 ( GLUCUROISOM-RXN ) GLUCUROISOM-RXN :gene-match glucuronate = fructuronate 2 GUI2 glucuronate isomerase ( D-galacturonate ) [c] : galur <==> tagur B3092 ( GALACTUROISOM-RXN ) GALACTUROISOM-RXN :gene-match galacturonate = D-tagaturonate 2 H2O2tex hydrogen peroxide transport via diffusion ( external ) h2o2[e] <==> h2o2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da h2o2 0 H2Otex H2O transport via diffusion ( extracellular to periplasm ) h2o[e] <==> h2o[p] ( B1377 OR B0929 OR B2215 OR B0241 OR B1319 OR B0957 OR B3875 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2542 :gene-match mono-, di-, or trisaccharide [extracellular space] =mono-, di-, or trisaccharide [periplasmic space] Mono-Di-And-Tri-Saccharides-<600Da h2o 0 H2Otpp H2O transport via diffusion ( periplasm ) h2o[p] <==> h2o[c] B0875 ( TRANS-RXN-145 ) TRANS-RXN-145 :gene-match H2O[periplasmic space] =H2O[cytosol] 1 H2Stex h2s transport via diffusion ( extracellular to periplasm ) h2s[e] <==> h2s[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da h2s 0 H2tex hydrogen transport via diffusion ( extracellular to periplasm ) h2[e] <==> h2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da h2 0 HACD1i 3-hydroxyacyl-CoA dehydrogenase ( acetoacetyl-CoA ) [c] : 3hbcoa + nad --> aacoa + h + nadh ( B3846 OR B2341 ) ( 1.1.1.211-RXN OHACYL-COA-DEHYDROG-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3hbcoa, aacoa 2 HACD2i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxohexanoyl-CoA ) [c] : 3hhcoa + nad --> 3ohcoa + h + nadh ( B3846 OR B2341 ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3hhcoa, 3ohcoa 2 HACD3i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxooctanoyl-CoA ) [c] : 3hocoa + nad --> 3oocoa + h + nadh ( B2341 OR B3846 ) ( OHACYL-COA-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa 3hocoa, 3oocoa, h 2 HACD4i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxodecanoyl-CoA ) [c] : 3hdcoa + nad --> 3odcoa + h + nadh ( B3846 OR B2341 ) ( OHACYL-COA-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa 3hdcoa, h, 3odcoa 2 HACD5i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxododecanoyl-CoA ) [c] : 3hddcoa + nad --> 3oddcoa + h + nadh ( B3846 OR B2341 ) ( OHACYL-COA-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3oddcoa, 3hddcoa 2 HACD6i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxotetradecanoyl-CoA ) [c] : 3htdcoa + nad --> 3otdcoa + h + nadh ( B3846 OR B2341 ) ( OHACYL-COA-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA h 4 HACD7i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxohexadecanoyl-CoA ) [c] : 3hhdcoa + nad --> 3ohdcoa + h + nadh ( B3846 OR B2341 ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3ohdcoa, 3hhdcoa 2 HACD8i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxooctadecanoyl-CoA ) [c] : 3hodcoa + nad --> 3oodcoa + h + nadh ( B3846 OR B2341 ) ( OHACYL-COA-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3hodcoa, 3oodcoa 2 HBZOPT Hydroxybenzoate octaprenyltransferase [c] : 4hbz + octdp --> 3ophb + ppi B4040 ( 4OHBENZOATE-OCTAPRENYLTRANSFER-RXN ) 4OHBENZOATE-OCTAPRENYLTRANSFER-RXN :gene-match octaprenyl diphosphate + p-hydroxybenzoate = diphosphate + 3-octaprenyl-4-hydroxybenzoate 4 HCINNMt2rpp "3-hydroxycinnamic acid transport via proton symport, reversible ( periplasm )" 3hcinnm[p] + h[p] <==> 3hcinnm[c] + h[c] B0353 ( :UNMAPPED-CPDS ) TRANS-RXN-61 :gene-match H+[periplasmic space] + 3-(3-hydroxyphenyl)propionate[periplasmic space] =H+[cytosol] + 3-(3-hydroxyphenyl)propionate[cytosol] 3hpppn 3hcinnm 1 HCINNMtex 3-hydroxycinnamic acid transport via diffusion ( extracellular to periplasm ) 3hcinnm[e] <==> 3hcinnm[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 3hcinnm 0 HCO3E HCO3 equilibration reaction [c] : co2 + h2o <==> h + hco3 ( B0339 OR B0126 ) CARBODEHYDRAT-RXN :gene-match H2CO3 = H2O + CO2 H2CO3 h, hco3 2 HCYSMT homocysteine S-methyltransferase [c] : amet + hcys-L --> ahcys + h + met-L B0261 ( HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN :gene-match L-homocysteine + S-adenosyl-L-methionine = L-methionine + S-adenosyl-L-homocysteine h 4 HCYSMT2 Homocysteine Methyltransferase [c] : hcys-L + mmet --> h + ( 2 ) met-L B0261 ( MMUM-RXN ) ( ( RIGHT REMOVE PROTON ) ) MMUM-RXN :gene-match S-methyl-L-methionine + L-homocysteine = 2 L-methionine h 3 HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion ( extracellular to periplasm ) hdca[e] --> hdca[p] B2344 ( RXN0-1802 ) ( :EXPANDED-RXN-MATCH ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid hdca 0 HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion ( extracellular to periplasm ) hdcea[e] --> hdcea[p] B2344 ( RXN0-1802 ) ( :EXPANDED-RXN-MATCH ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid hdcea 0 HDCOAI hexadecenoyl-coa cis-trans isomerization [c] : hdcoa --> hdd2coa B3846 ( ENOYL-COA-DELTA-ISOM-RXN ) ENOYL-COA-DELTA-ISOM-RXN :gene-match a cis-3-enoyl-CoA = a trans-2-enoyl-CoA CIS-DELTA3-ENOYL-COA, td2coa hdcoa, hdd2coa 0 HEMEOS Heme O synthase [c] : frdp + h2o + pheme --> hemeO + ppi B0428 ( HEMEOSYN-RXN ) HEMEOSYN-RXN :gene-match protoheme IX + trans, trans-farnesyl diphosphate + H2O = heme o + diphosphate 5 HEPK1 LPS heptose kinase I ( LPS core synthesis ) [c] : atp + hhlipa --> adp + h + phhlipa B3630 ( :UNMAPPED-CPDS ) RXN0-5121 :gene-match glucosyl-heptosyl2-KDO2-lipid A + ATP = glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP CPD0-932, CPD0-933 h, hhlipa, phhlipa 2 HEPK2 LPS heptose kinase II ( LPS core synthesis ) [c] : atp + hphhlipa --> adp + h + phphhlipa B3625 ( :UNMAPPED-CPDS ) RXN0-5123 :gene-match glucosyl-heptosyl3-KDO2-lipid A-phosphate + ATP = glucosyl-heptosyl3-KDO2-lipid A-bisphosphate + ADP CPD0-934, CPD0-935 h, hphhlipa, phphhlipa 2 HEPT1 heptosyltransferase I ( LPS core synthesis ) [c] : adphep-LD + lipa --> adp + h + hlipa B3621 ( RXN0-5118 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5118 :gene-match KDO2-lipid A + ADP-L-glycero-D-manno-heptose = heptosyl-KDO2-lipid A + ADP h 4 HEPT2 heptosyltransferase II ( LPS core synthesis ) [c] : adphep-LD + hlipa --> adp + h + hhlipa B3620 ( RXN0-5061 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5061 :gene-match heptosyl-KDO2-lipid A + ADP-L-glycero-D-manno-heptose = heptosyl2-KDO2-lipid A + ADP h 4 HEPT3 heptosyltransferase III ( LPS core synthesis ) [c] : adphep-LD + phhlipa --> adp + h + hphhlipa B3632 ( :UNMAPPED-CPDS ) RXN0-5122 :gene-match glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-D-manno-heptose = glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP CPD0-933, CPD0-934 h, phhlipa, hphhlipa 2 HEPT4 heptosyltransferase IV ( LPS core synthesis ) [c] : adphep-LD + gggagicolipa --> adp + colipa + h B3623 ( :UNMAPPED-CPDS ) RXN0-5127 :gene-match galactosyl-glucosyl3-heptosyl3-KDO2-lipid A-bisphosphate + ADP-L-glycero-D-manno-heptose = Lipid A-core + ADP CPD0-938 gggagicolipa, h 3 HETZK hydroxyethylthiazole kinase [c] : 4mhetz + atp --> 4mpetz + adp + h B2104 ( THIAZOLSYN3-RXN ) ( ( RIGHT REMOVE PROTON ) ) THIAZOLSYN3-RXN :gene-match ATP + 4-methyl-5-(beta-hydroxyethyl)thiazole = ADP + 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate h 4 HEX1 hexokinase ( D-glucose:ATP ) [c] : atp + glc-D --> adp + g6p + h B2388 ( GLUCOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLUCOKIN-RXN :gene-match beta-D-glucose + ATP = beta-D-glucose-6-phosphate + ADP GLC h, glc-D 3 HEX7 hexokinase ( D-fructose:ATP ) [c] : atp + fru --> adp + f6p + h B0394 ( FRUCTOKINASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) FRUCTOKINASE-RXN :gene-match fructose + ATP -> D-fructose-6-phosphate + ADP h 4 HG2t3pp mercury ( Hg+2 ) transport out via proton antiport ( periplasm ) h[p] + hg2[c] --> h[c] + hg2[p] B3915 TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 hg2 1 HG2tex mercury ( Hg+2 ) transport via diffusion ( extracellular to periplasm ) hg2[e] <==> hg2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da hg2 0 HISabcpp L-histidine transport via ABC system ( periplasm ) atp[c] + h2o[c] + his-L[p] --> adp[c] + h[c] + his-L[c] + pi[c] ( B2309 AND B2307 AND B2306 AND B2308 ) ( ABC-14-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-14-RXN :gene-match ATP + L-histidine[periplasmic space] + H2O =ADP + phosphate + L-histidine[cytosol] h 5 HISt2rpp L-histidine reversible transport via proton symport ( periplasm ) h[p] + his-L[p] <==> h[c] + his-L[c] B0112 TRANS-RXN-56 :gene-match H+[periplasmic space] + L-phenylalanine[periplasmic space] =H+[cytosol] + L-phenylalanine[cytosol] phe-L his-L 1 HISTD histidinol dehydrogenase [c] : h2o + histd + ( 2 ) nad --> ( 3 ) h + his-L + ( 2 ) nadh B2020 HISTALDEHYD-RXN :gene-match histidinal + NAD+ + H2O -> L-histidine + NADH HISTIDINAL h, histd 4 HIStex L-histidine transport via diffusion ( extracellular to periplasm ) his-L[e] <==> his-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da his-L 0 HISTP histidinol-phosphatase [c] : h2o + hisp --> histd + pi B2022 ( HISTIDPHOS-RXN ) HISTIDPHOS-RXN :gene-match L-histidinol-phosphate + H2O -> histidinol + phosphate 4 HISTRS Histidyl-tRNA synthetase [c] : atp + his-L + trnahis --> amp + histrna + ppi B2514 ( HISTIDINE--TRNA-LIGASE-RXN ) HISTIDINE--TRNA-LIGASE-RXN :gene-match tRNAhis + L-histidine + ATP -> L-histidyl-tRNAhis + diphosphate + AMP 6 HKNDDH "2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase" [c] : h2o + hkndd --> h + op4en + succ B0349 ( MHPCHYDROL-RXN ) ( ( RIGHT REMOVE PROTON ) ) MHPCHYDROL-RXN :gene-match 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate + H2O = 2-oxopent-4-enoate + succinate h 4 HKNTDH 2-hydroxy-6-ketononotrienedioate hydrolase [c] : h2o + hkntd --> fum + h + op4en B0349 ( :UNMAPPED-CPDS ) MHPCHYDROL-RXN :gene-match 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate + H2O = 2-oxopent-4-enoate + succinate succ, hkndd h, hkntd, fum 2 HMBS hydroxymethylbilane synthase [c] : h2o + ( 4 ) ppbng --> hmbil + ( 4 ) nh4 B3805 ( OHMETHYLBILANESYN-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) OHMETHYLBILANESYN-RXN :gene-match H2O + 4 porphobilinogen = 4 ammonia + hydroxymethylbilane AMMONIA nh4 3 HMPK1 hydroxymethylpyrimidine kinase ( ATP ) [c] : 4ahmmp + atp --> 4ampm + adp + h ( B2103 OR B2418 ) ( OHMETPYRKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) OHMETPYRKIN-RXN :gene-match ATP + hydroxymethylpyrimidine = ADP + hydroxymethylpyrimidine phosphate h 4 HOMt2pp L-homoserineserine efflux via proton symport h[p] + hom-L[c] --> h[c] + hom-L[p] ( B0813 OR B3824 ) ( TRANS-RXN-242 ) TRANS-RXN-242 :gene-match H+[periplasmic space] + homoserine[cytosol] =H+[cytosol] + homoserine[periplasmic space] 2 HOMtex L-homoserine transport via diffusion ( extracellular to periplasm ) hom-L[e] <==> hom-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da hom-L 0 HOPNTAL 4-hydroxy-2-oxopentanoate aldolase [c] : 4h2opntn --> acald + pyr B0352 ( MHPELY-RXN ) MHPELY-RXN :gene-match 4-hydroxy-2-ketovalerate = acetaldehyde + pyruvate 3 HPPK2 6-hydroxymethyl-dihydropterin pyrophosphokinase [c] : 6hmhpt + atp --> 6hmhptpp + amp + h B0142 ( H2PTERIDINEPYROPHOSPHOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) H2PTERIDINEPYROPHOSPHOKIN-RXN :gene-match 6-hydroxymethyl-dihydropterin + ATP = 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate + AMP h 4 HPPPNDO "2,3-dihydroxypheylpropionate 1,2-dioxygenase" [c] : dhpppn + o2 --> h + hkndd B0348 ( 1.13.11.16-RXN ) ( ( RIGHT REMOVE PROTON ) ) 1.13.11.16-RXN :gene-match 3-(2,3-dihydroxyphenyl)propionate + O2 = 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate h 3 HPPPNt2rpp "3-( 3-hydroxyphenyl )propionate transport via proton symport, reversible ( periplasm )" 3hpppn[p] + h[p] <==> 3hpppn[c] + h[c] B0353 ( TRANS-RXN-61 ) TRANS-RXN-61 :gene-match H+[periplasmic space] + 3-(3-hydroxyphenyl)propionate[periplasmic space] =H+[cytosol] + 3-(3-hydroxyphenyl)propionate[cytosol] 2 HPPPNtex 3-( 3-hydroxyphenyl )propionate transport via diffusion ( extracellular to periplasm ) 3hpppn[e] <==> 3hpppn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da 3hpppn 0 HPYRI hydroxypyruvate isomerase [c] : hpyr <==> 2h3oppan B0508 ( RXN0-305 ) RXN0-305 :gene-match hydroxypyruvate = tartronate semialdehyde 2 HPYRRx Hydroxypyruvate reductase ( NADH ) [c] : h + hpyr + nadh --> glyc-R + nad ( B1033 OR B3553 ) ( GLYCERATE-DEHYDROGENASE-RXN ) ( :METACYC ( LEFT REMOVE PROTON ) ) RXN0-300 :gene-match glycerate + NADP+ = hydroxypyruvate + NADPH nadph, nadp h, nadh, nad 2 HPYRRy Hydroxypyruvate reductase ( NADPH ) [c] : h + hpyr + nadph --> glyc-R + nadp ( B3553 OR B1033 ) ( RXN0-300 ) ( ( LEFT REMOVE PROTON ) ) RXN0-300 :gene-match glycerate + NADP+ = hydroxypyruvate + NADPH h 4 HSDy homoserine dehydrogenase ( NADPH ) [c] : hom-L + nadp <==> aspsa + h + nadph ( B3940 OR B0002 ) ( HOMOSERDEHYDROG-RXN ) ( :EXPANDED-RXN-MATCH ) HOMOSERDEHYDROG-RXN :gene-match homoserine + NAD(P)+ = L-aspartate-semialdehyde + NAD(P)H + H+ NAD(P), NAD(P)H nadph, nadp 3 HSK homoserine kinase [c] : atp + hom-L --> adp + h + phom B0003 ( HOMOSERKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) HOMOSERKIN-RXN :gene-match homoserine + ATP = O-phospho-L-homoserine + ADP h 4 HSST homoserine O-succinyltransferase [c] : hom-L + succoa --> coa + suchms B4013 ( HOMSUCTRAN-RXN ) HOMSUCTRAN-RXN :gene-match homoserine + succinyl-CoA = O-succinyl-L-homoserine + coenzyme A 4 HSTPT histidinol-phosphate transaminase [c] : glu-L + imacp --> akg + hisp B2021 ( HISTAMINOTRANS-RXN ) HISTAMINOTRANS-RXN :gene-match imidazole acetol-phosphate + L-glutamate = L-histidinol-phosphate + alpha-ketoglutarate 4 Htex proton transport via diffusion ( extracellular to periplasm ) h[e] <==> h[p] ( B0929 OR B1377 OR B2215 OR B0241 ) ( TRANS-RXN-90 ) ( ( LEFT REMOVE PROTON ) ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da h 0 HXAND hypoxanthine dehydrogenase [c] : h2o + hxan + nad --> h + nadh + xan ( B2866 AND B2867 AND B2868 ) ( RXN-7682 ) ( :METACYC ) RXN0-901 :gene-match xanthine + NAD+ + H2O = urate + NADH + H+ urate hxan 5 HXAtex Hexanoate transport via diffusion ( extracellular to periplasm ) hxa[e] <==> hxa[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da hxa 0 HXCT Acetyl-CoA:hexanoate-CoA transferase [c] : accoa + hxa --> ac + hxcoa ( B2221 AND B2222 ) ACECOATRANS-RXN :gene-match an acyl-CoA + acetate = a fatty acid + acetyl-CoA a fatty acid, tdecoa hxa, hxcoa 2 HXPRT hypoxanthine phosphoribosyltransferase ( Hypoxanthine ) [c] : hxan + prpp --> imp + ppi ( B0238 OR B0125 ) ( HYPXPRIBOSYLTRAN-RXN HYPOXANPRIBOSYLTRAN-RXN ) HYPOXANPRIBOSYLTRAN-RXN :gene-match diphosphate + inosine-5'-phosphate = 5-phosphoribosyl 1-pyrophosphate + hypoxanthine 4 HYD1pp hydrogenase ( ubiquinone-8: 2 protons ) ( periplasm ) ( 2 ) h[c] + h2[c] + q8[c] --> ( 2 ) h[p] + q8h2[c] ( ( B0972 AND B0973 AND B0974 ) OR ( B2994 AND B2997 ) OR ( B2719 AND B2720 AND B2721 AND B2722 AND B2723 AND B2724 ) ) RXN0-3283 :gene-match 2 H+ + 2 e- -> H2 E- q8, q8h2 2 HYD2pp Hydrogenase ( menaquinone8: 2 protons ) ( periplasm ) ( 2 ) h[c] + h2[c] + mqn8[c] --> ( 2 ) h[p] + mql8[c] ( ( B0972 AND B0973 AND B0974 ) OR ( B2994 AND B2997 ) ) ( 1.12.5.1-RXN ) ( :METACYC ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-4141 :gene-match H2 + an acceptor = 2 H+ + a reduced acceptor Donor-H2, Acceptor mqn8, mql8 2 HYD3pp Hydrogenase ( Demethylmenaquinone-8: 2 protons ) ( periplasm ) 2dmmq8[c] + ( 2 ) h[c] + h2[c] --> 2dmmql8[c] + ( 2 ) h[p] ( ( B0972 AND B0973 AND B0974 ) OR ( B2994 AND B2997 ) ) RXN0-4141 :gene-match H2 + an acceptor = 2 H+ + a reduced acceptor Donor-H2, Acceptor 2dmmq8, 2dmmql8 2 HYXNtex Hypoxanthine transport via diffusion ( extracellular to periplasm ) hxan[e] <==> hxan[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da hxan 0 ICDHyr isocitrate dehydrogenase ( NADP ) [c] : icit + nadp <==> akg + co2 + nadph B1136 ( ISOCITDEH-RXN ) ISOCITDEH-RXN :gene-match isocitrate + NADP+ = NADPH + alpha-ketoglutarate + CO2 5 ICHORS isochorismate synthase [c] : chor <==> ichor B2265 ( ISOCHORSYN-RXN ) ISOCHORSYN-RXN :gene-match chorismate -> isochorismate 2 ICHORSi Isochorismate Synthase [c] : chor --> ichor B0593 ( ISOCHORSYN-RXN ) ISOCHORSYN-RXN :gene-match chorismate -> isochorismate 2 ICHORT isochorismatase [c] : h2o + ichor --> 23ddhb + pyr B0595 ( ISOCHORMAT-RXN ) ISOCHORMAT-RXN :gene-match H2O + isochorismate = pyruvate + 2,3-dihydro-2,3-dihydroxybenzoate 4 ICL Isocitrate lyase [c] : icit --> glx + succ B4015 ( ISOCIT-CLEAV-RXN ) ISOCIT-CLEAV-RXN :gene-match isocitrate = glyoxylate + succinate 3 IDOND L-idonate 5-dehydrogenase [c] : 5dglcn + h + nadh <==> idon-L + nad B4267 ( IDONDEHYD-RXN ) ( ( LEFT REMOVE PROTON ) ) IDONDEHYD-RXN :gene-match L-idonate + NAD+ = NADH + 5-ketogluconate h 4 IDOND2 L-indonate 5-dehydrogenase ( NADP ) [c] : 5dglcn + h + nadph --> idon-L + nadp B4267 ( L-IDONATE-2-DEHYDROGENASE-RXN ) ( :METACYC ( LEFT REMOVE PROTON ) ) IDONDEHYD-RXN :gene-match L-idonate + NAD+ = NADH + 5-ketogluconate nadh, nad nadph, h, nadp 2 IDONt2rpp "L-idonate transport via proton symport, reversible ( periplasm )" h[p] + idon-L[p] <==> h[c] + idon-L[c] B4265 ( TRANS-RXN-181 ) TRANS-RXN-181 :gene-match H+[periplasmic space] + L-idonate[periplasmic space] =L-idonate[cytosol] + H+[cytosol] 2 IDONtex L-idonate transport via diffusion ( extracellular to periplasm ) idon-L[e] <==> idon-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da idon-L 0 IG3PS Imidazole-glycerol-3-phosphate synthase [c] : gln-L + prlp --> aicar + eig3p + glu-L + h ( B2023 AND B2025 ) ( GLUTAMIDOTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLUTAMIDOTRANS-RXN :gene-match phosphoribulosylformimino-AICAR-P + L-glutamine -> D-erythro-imidazole-glycerol-phosphate + AICAR + L-glutamate h 5 IGPDH imidazoleglycerol-phosphate dehydratase [c] : eig3p --> h2o + imacp B2022 ( IMIDPHOSDEHYD-RXN ) IMIDPHOSDEHYD-RXN :gene-match D-erythro-imidazole-glycerol-phosphate -> imidazole acetol-phosphate + H2O 3 IGPS indole-3-glycerol-phosphate synthase [c] : 2cpr5p + h --> 3ig3p + co2 + h2o B1262 ( IGPSYN-RXN ) ( ( LEFT REMOVE PROTON ) ) IGPSYN-RXN :gene-match 1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate -> indole-3-glycerol-phosphate + CO2 + H2O h 4 ILEabcpp L-isoleucine transport via ABC system ( periplasm ) atp[c] + h2o[c] + ile-L[p] --> adp[c] + h[c] + ile-L[c] + pi[c] ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ( ABC-15-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-15-RXN :gene-match ATP + L-isoleucine[periplasmic space] + H2O =ADP + phosphate + L-isoleucine[cytosol] h 5 ILEt2rpp L-isoleucine reversible transport via proton symport ( periplasm ) h[p] + ile-L[p] <==> h[c] + ile-L[c] B0401 TRANS-RXN-126 :gene-match Na+[periplasmic space] + L-isoleucine[periplasmic space] =Na+[cytosol] + L-isoleucine[cytosol] na1 h 1 ILETA isoleucine transaminase [c] : akg + ile-L <==> 3mop + glu-L B3770 ( BRANCHED-CHAINAMINOTRANSFERILEU-RXN ) BRANCHED-CHAINAMINOTRANSFERILEU-RXN :gene-match L-isoleucine + alpha-ketoglutarate = 2-keto-3-methyl-valerate + L-glutamate 4 ILEtex L-isoleucine transport via diffusion ( extracellular to periplasm ) ile-L[e] <==> ile-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ile-L 0 ILETRS Isoleucyl-tRNA synthetase [c] : atp + ile-L + trnaile --> amp + iletrna + ppi B0026 ( ISOLEUCINE--TRNA-LIGASE-RXN ) ISOLEUCINE--TRNA-LIGASE-RXN :gene-match tRNAile + L-isoleucine + ATP -> L-isoleucyl-tRNAile + diphosphate + AMP 6 IMPC IMP cyclohydrolase [c] : h2o + imp <==> fprica B4006 ( IMPCYCLOHYDROLASE-RXN ) IMPCYCLOHYDROLASE-RXN :gene-match inosine-5'-phosphate + H2O = phosphoribosyl-formamido-carboxamide 3 IMPD IMP dehydrogenase [c] : h2o + imp + nad --> h + nadh + xmp B2508 ( IMP-DEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) IMP-DEHYDROG-RXN :gene-match H2O + NAD+ + inosine-5'-phosphate = NADH + xanthosine-5-phosphate h 5 IMPtex IMP transport via diffusion ( extracellular to periplasm ) imp[e] <==> imp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da imp 0 INDOLEt2pp "Indole transport via proton symport, irreversible ( periplasm )" h[c] + indole[c] --> h[p] + indole[p] ( B3265 AND B3266 ) ( TRANS-RXN-142 ) TRANS-RXN-92 :gene-match H+[periplasmic space] + multidrug[cytosol] =H+[cytosol] + multidrug[periplasmic space] Multidrug indole 1 INDOLEt2rpp "Indole transport via proton symport, reversible ( periplasm )" h[p] + indole[p] <==> h[c] + indole[c] B3161 ( TRANS-RXN-142 ) TRANS-RXN-142 :gene-match H+[periplasmic space] + indole[periplasmic space] =H+[cytosol] + indole[cytosol] 2 INDOLEtex Indole transport via diffusion ( extracellular to periplasm ) indole[e] <==> indole[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da indole 0 INSH Inosine hydrolase [c] : h2o + ins --> hxan + rib-D B0030 ( INOSINE-NUCLEOSIDASE-RXN ) INOSINE-NUCLEOSIDASE-RXN :gene-match inosine + H2O -> hypoxanthine + D-ribose 4 INSK insosine kinase [c] : atp + ins --> adp + h + imp B0477 ( INOSINEKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) INOSINEKIN-RXN :gene-match inosine + ATP = inosine-5'-phosphate + ADP h 4 INSt2pp inosine transport in via proton symport ( periplasm ) h[p] + ins[p] --> h[c] + ins[c] B2964 ( TRANS-RXN-108G ) TRANS-RXN-108 :gene-match H+[periplasmic space] + a nucleoside[periplasmic space] =H+[cytosol] + a nucleoside[cytosol] Nucleosides ins 1 INSt2rpp "inosine transport in via proton symport, reversible ( periplasm )" h[p] + ins[p] <==> h[c] + ins[c] B2406 ( TRANS-RXN-108G ) TRANS-RXN-31 :gene-match H+[periplasmic space] + xanthosine[periplasmic space] =H+[cytosol] + xanthosine[cytosol] xtsn ins 1 INSTtex inositol transport via diffusion ( extracellular to periplasm ) inost[e] <==> inost[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da inost 0 IPDDI isopentenyl-diphosphate D-isomerase [c] : ipdp <==> dmpp B2889 ( IPPISOM-RXN ) IPPISOM-RXN :gene-match delta3-isopentenyl-PP = dimethylallyl-pyrophosphate 2 IPDPS 1-hydroxy-2-methyl-2-( E )-butenyl 4-diphosphate reductase ( ipdp ) [c] : h + h2mb4p + nadh --> h2o + ipdp + nad B0029 ( ISPH2-RXN ) ( :EXPANDED-RXN-MATCH ) ISPH2-RXN :gene-match 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + NAD(P)H + H+ = delta3-isopentenyl-PP + NAD(P)+ + H2O NAD(P), NAD(P)H nadh, nad 4 IPMD 3-isopropylmalate dehydrogenase [c] : 3c2hmp + nad --> 3c4mop + h + nadh B0073 ( 3-ISOPROPYLMALDEHYDROG-RXN ) 3-ISOPROPYLMALDEHYDROG-RXN :gene-match 3-isopropylmalate + NAD+ = 2-isopropyl-3-oxosuccinate + NADH + H+ 5 IPPMIa 3-isopropylmalate dehydratase [c] : 3c2hmp <==> 2ippm + h2o ( B0071 AND B0072 ) ( :UNMAPPED-CPDS ) 3-ISOPROPYLMALISOM-RXN :gene-match 2-isopropylmalate = 3-isopropylmalate 3c3hmp h2o, 2ippm 1 IPPMIb 2-isopropylmalate hydratase [c] : 2ippm + h2o <==> 3c3hmp ( B0071 AND B0072 ) ( :UNMAPPED-CPDS ) 3-ISOPROPYLMALISOM-RXN :gene-match 2-isopropylmalate = 3-isopropylmalate 3c2hmp h2o, 2ippm 1 IPPS 2-isopropylmalate synthase [c] : 3mob + accoa + h2o --> 3c3hmp + coa + h B0074 ( 2-ISOPROPYLMALATESYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2-ISOPROPYLMALATESYN-RXN :gene-match 2-keto-isovalerate + acetyl-CoA + H2O = 2-isopropylmalate + coenzyme A h 5 ISETACabcpp isethionate transport via ABC system ( periplasm ) atp[c] + h2o[c] + isetac[p] --> adp[c] + h[c] + isetac[c] + pi[c] ( ( B0365 AND B0366 AND B0367 ) OR ( B0936 AND B0933 AND B0934 ) ) ABC-64-RXN :gene-match taurine[periplasmic space] + ATP + H2O =taurine[cytosol] + ADP + phosphate taur h, isetac 4 ISETACtex isethionate transport via diffusion ( extracellular to periplasm ) isetac[e] <==> isetac[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da isetac 0 K2L4Aabcpp KDO( 2 )-lipid IV A transport via ABC system ( periplasm ) atp[c] + h2o[c] + kdo2lipid4[c] --> adp[c] + h[c] + kdo2lipid4[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, kdo2lipid4 4 Kabcpp Potassium ABC transporter ( periplasm ) atp[c] + h2o[c] + k[p] --> adp[c] + h[c] + k[c] + pi[c] ( B0698 AND B0697 AND B0696 ) ( TRANS-RXN-2 ) ( ( RIGHT REMOVE PROTON ) ) TRANS-RXN-2 :gene-match K+[periplasmic space] + ATP + H2O =K+[cytosol] + ADP + phosphate h 5 KARA1 "ketol-acid reductoisomerase ( 2,3-dihydroxy-3-methylbutanoate )" [c] : 23dhmb + nadp <==> alac-S + h + nadph B3774 ( ACETOLACTREDUCTOISOM-RXN ) ACETOLACTREDUCTOISOM-RXN :gene-match 2,3-dihydroxy-isovalerate + NADP+ = 2-acetolactate + NADPH + H+ 5 KARA2 ketol-acid reductoisomerase ( 2-Acetolactate ) [c] : 2ahbut + h + nadph <==> 23dhmp + nadp B3774 ( ACETOOHBUTREDUCTOISOM-RXN ) ( ( LEFT REMOVE PROTON ) ) ACETOOHBUTREDUCTOISOM-RXN :gene-match 2-aceto-2-hydroxy-butyrate + NADPH = 2,3-dihydroxy-3-methylvalerate + NADP+ h 4 KAS14 beta-ketoacyl-ACP synthase [c] : acACP + h + malACP --> ACP + actACP + co2 ( B2323 OR B1095 ) ( 3-OXOACYL-ACP-SYNTH-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP h, actACP, acACP 3 KAS15 beta-ketoacyl-ACP synthase ( 2 ) [c] : accoa + h + malACP --> actACP + co2 + coa B1091 ( 3-OXOACYL-ACP-COA-SYNTHIII-RXN ) ( :EXPANDED-RXN-MATCH ( LEFT REMOVE PROTON ) ) 3-OXOACYL-ACP-COA-SYNTHIII-RXN :gene-match acetyl-CoA + malonyl-ACP -> an acetoacetyl-ACP + coenzyme A + CO2 Acetoacetyl-ACPs h, actACP 4 KAT1 3-ketoacyl-CoA thiolase [c] : aacoa + coa --> ( 2 ) accoa ( B2342 OR B3845 ) ( ACETYL-COA-ACETYLTRANSFER-RXN ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa aacoa 2 KAT2 3-ketoacyl-CoA thiolase [c] : 3ohcoa + coa --> accoa + btcoa ( B3845 OR B2342 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa btcoa, 3ohcoa 2 KAT3 3-ketoacyl-CoA thiolase [c] : 3oocoa + coa --> accoa + hxcoa ( B2342 OR B3845 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa hxcoa, 3oocoa 2 KAT4 3-ketoacyl-CoA thiolase [c] : 3odcoa + coa --> accoa + occoa ( B2342 OR B3845 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa occoa, 3odcoa 2 KAT5 3-ketoacyl-CoA thiolase [c] : 3oddcoa + coa --> accoa + dcacoa ( B2342 OR B3845 ) ( KETOACYLCOATHIOL-RXN RXN-3641 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa dcacoa, 3oddcoa 2 KAT6 3-ketoacyl-CoA thiolase [c] : 3otdcoa + coa --> accoa + ddcacoa ( B3845 OR B2342 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A tdecoa ddcacoa 3 KAT7 3-ketoacyl-CoA thiolase [c] : 3ohdcoa + coa --> accoa + tdcoa ( B3845 OR B2342 ) ( 2.3.1.155-RXN ) ( :METACYC ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa 3ohdcoa, tdcoa 2 KAT8 3-ketoacyl-CoA thiolase [c] : 3oodcoa + coa --> accoa + pmtcoa ( B3845 OR B2342 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa pmtcoa, 3oodcoa 2 KDOCT2 3-deoxy-manno-octulosonate cytidylyltransferase [c] : ctp + kdo --> ckdo + ppi B0918 ( CPM-KDOSYNTH-RXN ) CPM-KDOSYNTH-RXN :gene-match 3-deoxy-D-manno-octulosonate + CTP = CMP-3-deoxy-D-manno-octulosonate + diphosphate 4 KDOPP 3-deoxy-manno-octulosonate-8-phosphatase [c] : h2o + kdo8p --> kdo + pi B3198 ( KDO-8PPHOSPHAT-RXN ) KDO-8PPHOSPHAT-RXN :gene-match 3-deoxy-D-manno-octulosonate 8-P + H2O = 3-deoxy-D-manno-octulosonate + phosphate 4 KDOPS 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase [c] : ara5p + h2o + pep --> kdo8p + pi B1215 ( KDO-8PSYNTH-RXN ) KDO-8PSYNTH-RXN :gene-match D-arabinose 5-phosphate + H2O + phosphoenolpyruvate -> 3-deoxy-D-manno-octulosonate 8-P + phosphate 5 KG6PDC 3-keto-L-gulonate 6-phosphate decarboxylase [c] : 3dhgulnp + h --> co2 + xu5p-L ( B4196 OR B3581 ) ( RXN0-705 ) ( ( LEFT REMOVE PROTON ) ) RXN0-705 :gene-match 3-keto-L-gulonate 6-phosphate = L-xylulose-5-phosphate + CO2 h 3 Kt2pp potassium transport in via proton symport ( periplasm ) h[p] + k[p] --> h[c] + k[c] ( B1250 OR B3747 OR ( B1291 AND B3290 AND B3849 ) OR ( B1291 AND B3290 AND B1363 ) ) ( TRANS-RXN-3 ) TRANS-RXN-3 :gene-match H+[periplasmic space] + K+[periplasmic space] =H+[cytosol] + K+[cytosol] 2 Kt3pp potassium transport out via proton antiport ( periplasm ) h[p] + k[c] --> h[c] + k[p] ( B3350 OR B0047 OR B1216 OR B0842 ) ( TRANS-RXN-42 ) TRANS-RXN-42 :gene-match H+[periplasmic space] + K+[cytosol] =H+[cytosol] + K+[periplasmic space] 2 Ktex potassium transport via diffusion ( extracellular to periplasm ) k[e] <==> k[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da k 0 LA4NTpp "4-amino-4-deoxy-L-arabinotransferase ( LPS lipid A modification, periplasmic face of membrane ) )" [p] : colipa + uLa4n --> acolipa + udcpp B2257 ( :UNMAPPED-CPDS ) RXN0-2001 :gene-match KDO2-lipid A + 2 4-amino-4-deoxy-L-arabinose -> L-Ara4N-modified KDO2-Lipid A + 2 H2O lipa, h2o, 4-AMINO-4-DEOXY-L-ARABINOSE uLa4n, colipa, udcpp 1 LACZ b-galactosidase [c] : h2o + lcts --> gal + glc-D B0344 ( BETAGALACTOSID-RXN ) BETAGALACTOSID-RXN :gene-match H2O + lactose = beta-D-galactose + beta-D-glucose GLC, gal-bD gal, glc-D 2 LADGMDH L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase [c] : LalaDgluMdap + h2o --> 26dap-M + LalaDglu B1326 ( RXN0-961 ) RXN0-961 :gene-match L-Ala-gamma-D-Glu-Dap + H2O -> L-Ala-gamma-D-Glu + meso-diaminopimelate 4 LALDO2x D-Lactaldehyde:NAD+ 1-oxidoreductase [c] : h + mthgxl + nadh --> lald-D + nad B3945 ( D-LACTALDEHYDE-DEHYDROGENASE-RXN ) ( ( LEFT REMOVE PROTON ) ) GLYCDEH-RXN :gene-match NAD+ + glycerol = NADH + dihydroxy-acetone glyc, dha h, lald-D, mthgxl 2 LCADi lactaldehyde dehydrogenase [c] : h2o + lald-L + nad --> ( 2 ) h + lac-L + nadh B1415 ( LACTALDDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) LACTALDDEHYDROG-RXN :gene-match H2O + NAD+ + lactaldehyde -> NADH + lactate h 5 LCARS "lacaldehyde reductase ( S-propane-1,2-diol forming )" [c] : h + lald-L + nadh <==> 12ppd-S + nad B2799 ( LACTALDREDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) LACTALDREDUCT-RXN :gene-match NADH + lactaldehyde = NAD+ + propane-1,2-diol h 4 LCTSt3ipp Lactose transport via proton aniport ( periplasm ) h[p] + lcts[c] --> h[c] + lcts[p] ( B2170 OR B0070 OR B1528 ) ( TRANS-RXN-82 ) TRANS-RXN-82 :gene-match lactose[cytosol] + H+[periplasmic space] =lactose[periplasmic space] + H+[cytosol] 2 LCTStex Lactose transport via diffusion ( extracellular to periplasm ) lcts[e] <==> lcts[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da lcts 0 LCTStpp Lactose transport via proton symport ( periplasm ) h[p] + lcts[p] <==> h[c] + lcts[c] B0343 ( TRANS-RXN-24 ) TRANS-RXN-24 :gene-match H+[periplasmic space] + lactose[periplasmic space] =H+[cytosol] + lactose[cytosol] 2 LDH_D D-lactate dehydrogenase [c] : lac-D + nad <==> h + nadh + pyr ( B2133 OR B1380 ) ( DLACTDEHYDROGNAD-RXN ) ( ( RIGHT REMOVE PROTON ) ) DLACTDEHYDROGNAD-RXN :gene-match NAD+ + D-lactate = NADH + pyruvate h 4 LDH_D2 D-lactate dehydrogenase [c] : lac-D + q8 --> pyr + q8h2 B2133 ( DLACTDEHYDROGFAD-RXN ) DLACTDEHYDROGFAD-RXN :gene-match ubiquinone-8 + D-lactate = ubiquinol-8 + pyruvate 4 LEUabcpp L-leucine transport via ABC system ( periplasm ) atp[c] + h2o[c] + leu-L[p] --> adp[c] + h[c] + leu-L[c] + pi[c] ( ( B3454 AND B3455 AND B3457 AND B3458 AND B3456 ) OR ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ) ( ABC-35-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-35-RXN :gene-match ATP + L-leucine[periplasmic space] + H2O =ADP + phosphate + L-leucine[cytosol] h 5 LEUt2rpp L-leucine reversible transport via proton symport ( periplasm ) h[p] + leu-L[p] <==> h[c] + leu-L[c] B0401 TRANS-RXN-126B :gene-match Na+[periplasmic space] + L-leucine[periplasmic space] =Na+[cytosol] + L-leucine[cytosol] na1 h 1 LEUTAi leucine transaminase ( irreversible ) [c] : 4mop + glu-L --> akg + leu-L ( B3770 OR B4054 ) ( BRANCHED-CHAINAMINOTRANSFERLEU-RXN ) BRANCHED-CHAINAMINOTRANSFERLEU-RXN :gene-match L-leucine + alpha-ketoglutarate = 2-ketoisocaproate + L-glutamate 4 LEUtex L-leucine transport via diffusion ( extracellular to periplasm ) leu-L[e] <==> leu-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da leu-L 0 LEUTRS Leucyl-tRNA synthetase [c] : atp + leu-L + trnaleu --> amp + leutrna + ppi B0642 ( LEUCINE--TRNA-LIGASE-RXN ) LEUCINE--TRNA-LIGASE-RXN :gene-match tRNAleu + L-leucine + ATP -> L-leucyl-tRNAleu + diphosphate + AMP 6 LGTHL lactoylglutathione lyase [c] : gthrd + mthgxl --> lgt-S B1651 ( GLYOXI-RXN ) GLYOXI-RXN :gene-match S-lactoyl-glutathione = methylglyoxal + glutathione 3 LIPAabcpp lipid A transport via ABC system ( periplasm ) atp[c] + h2o[c] + lipa[c] --> adp[c] + h[c] + lipa[p] + pi[c] B0914 ( 3.6.3.39-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides lipa, h 4 LIPACabcpp lipid ( cold ) A transport via ABC system ( periplasm ) atp[c] + h2o[c] + lipa_cold[c] --> adp[c] + h[c] + lipa_cold[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides lipa_cold, h 4 LIPAHT2ex core oligosaccharide lipid A:hexadecanoate transferase ( n-C16:0 ) ( extracellular membrane ) [e] : colipa + h + hdca --> h2o + hacolipa B0622 ( :UNMAPPED-CPDS ) RXN0-1842 :gene-match a phospholipid + KDO2-lipid A -> hepta-acylated KDO2-lipid A + a glycerol ester lipa, A-GLYCEROL-ESTER, halipa, apg181 hdca, h, h2o, hacolipa, colipa 0 LIPAHTex Lipid A:hexadecanoate transferase ( n-C16:0 ) ( extracellular membrane ) [e] : h + hdca + lipa --> h2o + halipa B0622 RXN0-1842 :gene-match a phospholipid + KDO2-lipid A -> hepta-acylated KDO2-lipid A + a glycerol ester A-GLYCEROL-ESTER, apg181 hdca, h, h2o 2 L-LACD2 L-Lactate dehydrogenase ( ubiquinone ) [c] : lac-L + q8 --> pyr + q8h2 B3605 L-LACTDEHYDROGFMN-RXN :gene-match a quinone + lactate = a hydroquinone + pyruvate a quinone, a reduced quinone q8, q8h2 2 L-LACD3 L-Lactate dehydrogenase ( menaquinone ) [c] : lac-L + mqn8 --> mql8 + pyr B3605 ( L-LACTDEHYDROGFMN-RXN ) ( :EXPANDED-RXN-MATCH ) L-LACTDEHYDROGFMN-RXN :gene-match a quinone + lactate = a hydroquinone + pyruvate a quinone, a reduced quinone mqn8, mql8 2 L-LACt2rpp L-lactate reversible transport via proton symport ( periplasm ) h[p] + lac-L[p] <==> h[c] + lac-L[c] ( B3603 OR B2975 ) ( TRANS-RXN-104 ) TRANS-RXN-104 :gene-match H+[periplasmic space] + lactate[periplasmic space] =H+[cytosol] + lactate[cytosol] 2 L-LACtex L-lactate transport via diffusion ( extracellular to periplasm ) lac-L[e] <==> lac-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da lac-L 0 LPADSS Lipid A disaccaride synthase [c] : lipidX + u23ga --> h + lipidAds + udp B0182 ( LIPIDADISACCHARIDESYNTH-RXN ) ( ( RIGHT REMOVE PROTON ) ) LIPIDADISACCHARIDESYNTH-RXN :gene-match 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = lipid A disaccharide + UDP h 4 LPLIPAL1A120pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C12:0 ) ( periplasm )" [p] : 1ddecg3p + h2o --> ddca + glyc3p + h B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, ddca, 1ddecg3p 1 LPLIPAL1A140pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C14:0 ) ( periplasm )" [p] : 1tdecg3p + h2o --> glyc3p + h + ttdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1tdecg3p, ttdca 1 LPLIPAL1A141pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C14:1 ) ( periplasm )" [p] : 1tdec7eg3p + h2o --> glyc3p + h + ttdcea B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1tdec7eg3p, ttdcea 1 LPLIPAL1A160pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C16:0 ) ( periplasm )" [p] : 1hdecg3p + h2o --> glyc3p + h + hdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa hdca, 1hdecg3p, glyc3p, h 1 LPLIPAL1A161pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C16:1 ) ( periplasm )" [p] : 1hdec9eg3p + h2o --> glyc3p + h + hdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, hdcea, 1hdec9eg3p 1 LPLIPAL1A180pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C18:0 ) ( periplasm )" [p] : 1odecg3p + h2o --> glyc3p + h + ocdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1odecg3p, ocdca 1 LPLIPAL1A181pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C18:1 ) ( periplasm )" [p] : 1odec11eg3p + h2o --> glyc3p + h + ocdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1odec11eg3p, ocdcea 1 LPLIPAL1E120pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C12:0 ) ( periplasm )" [p] : 1agpe120 + h2o --> ddca + g3pe + h B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpe120, ddca, g3pe 1 LPLIPAL1E140pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C14:0 ) ( periplasm )" [p] : 1agpe140 + h2o --> g3pe + h + ttdca B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa 1agpe140, g3pe, ttdca, h 1 LPLIPAL1E141pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C14:1 ) ( periplasm )" [p] : 1agpe141 + h2o --> g3pe + h + ttdcea B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa 1agpe141, h, g3pe, ttdcea 1 LPLIPAL1E160pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C16:0 ) ( periplasm )" [p] : 1agpe160 + h2o --> g3pe + h + hdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa hdca, h, 1agpe160, g3pe 1 LPLIPAL1E161pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C16:1 ) ( periplasm )" [p] : 1agpe161 + h2o --> g3pe + h + hdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpe161, hdcea, g3pe 1 LPLIPAL1E180pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C18:0 ) ( periplasm )" [p] : 1agpe180 + h2o --> g3pe + h + ocdca B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, g3pe, 1agpe180, ocdca 1 LPLIPAL1E181pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C18:1 ) ( periplasm )" [p] : 1agpe181 + h2o --> g3pe + h + ocdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpe181, ocdcea, g3pe 1 LPLIPAL1G120pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C12:0 ) ( periplasm )" [p] : 1agpg120 + h2o --> ddca + g3pg + h B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa 1agpg120, ddca, g3pg, h 1 LPLIPAL1G140pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C14:0 ) ( periplasm )" [p] : 1agpg140 + h2o --> g3pg + h + ttdca B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpg140, g3pg, ttdca 1 LPLIPAL1G141pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C14:1 ) ( periplasm )" [p] : 1agpg141 + h2o --> g3pg + h + ttdcea B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, g3pg, 1agpg141, ttdcea 1 LPLIPAL1G160pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C16:0 ) ( periplasm )" [p] : 1agpg160 + h2o --> g3pg + h + hdca B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa hdca, h, 1agpg160, g3pg 1 LPLIPAL1G161pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C16:1 ) ( periplasm )" [p] : 1agpg161 + h2o --> g3pg + h + hdcea B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpg161, hdcea, g3pg 1 LPLIPAL1G180pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C18:0 ) ( periplasm )" [p] : 1agpg180 + h2o --> g3pg + h + ocdca B0494 ( :UNMAPPED-CPDS ) THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpg180, g3pg, ocdca 1 LPLIPAL1G181pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C18:1 ) ( periplasm )" [p] : 1agpg181 + h2o --> g3pg + h + ocdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpg181, ocdcea, g3pg 1 LPLIPAL2A120 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C12:0 )" [c] : 2ddecg3p + h2o --> ddca + glyc3p + ( 2 ) h B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates 2ddecg3p, h, glyc3p, ddca 1 LPLIPAL2A140 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C14:0 )" [c] : 2tdecg3p + h2o --> glyc3p + ( 2 ) h + ttdca B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates 2tdecg3p, h, glyc3p, ttdca 1 LPLIPAL2A141 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C14:1 )" [c] : 2tdec7eg3p + h2o --> glyc3p + ( 2 ) h + ttdcea B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, glyc3p, 2tdec7eg3p, ttdcea 1 LPLIPAL2A160 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C16:0 )" [c] : 2hdecg3p + h2o --> glyc3p + ( 2 ) h + hdca B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates hdca, h, glyc3p, 2hdecg3p 1 LPLIPAL2A161 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C16:1 )" [c] : 2hdec9eg3p + h2o --> glyc3p + ( 2 ) h + hdcea B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2hdec9eg3p, hdcea, glyc3p 1 LPLIPAL2A180 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C18:0 )" [c] : 2odecg3p + h2o --> glyc3p + ( 2 ) h + ocdca B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, glyc3p, 2odecg3p, ocdca 1 LPLIPAL2A181 "Lysophospholipase L2 ( 2-acylglycerophosphotidate, n-C18:1 )" [c] : 2odec11eg3p + h2o --> glyc3p + ( 2 ) h + ocdcea B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, glyc3p, ocdcea, 2odec11eg3p 1 LPLIPAL2ATE120 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C12:0 )" [c] : 2agpe120 + pg120 --> apg120 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe120, g3pe, pg120, apg120 0 LPLIPAL2ATE140 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:0 )" [c] : 2agpe140 + pg140 --> apg140 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe140, apg140, pg140, g3pe 0 LPLIPAL2ATE141 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:1 )" [c] : 2agpe141 + pg141 --> apg141 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates apg141, 2agpe141, pg141, g3pe 0 LPLIPAL2ATE160 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:0 )" [c] : 2agpe160 + pg160 --> apg160 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg160, 2agpe160, apg160, g3pe 0 LPLIPAL2ATE161 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:1 )" [c] : 2agpe161 + pg161 --> apg161 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg161, 2agpe161, apg161, g3pe 0 LPLIPAL2ATE180 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:0 )" [c] : 2agpe180 + pg180 --> apg180 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg180, 2agpe180, apg180, g3pe 0 LPLIPAL2ATE181 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:1 )" [c] : 2agpe181 + pg181 --> apg181 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg181, apg181, 2agpe181, g3pe 0 LPLIPAL2ATG120 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C12:0 )" [c] : 2agpg120 + pg120 --> apg120 + g3pg B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates 2agpg120, pg120, g3pg, apg120 0 LPLIPAL2ATG140 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:0 )" [c] : 2agpg140 + pg140 --> apg140 + g3pg B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates apg140, 2agpg140, pg140, g3pg 0 LPLIPAL2ATG141 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:1 )" [c] : 2agpg141 + pg141 --> apg141 + g3pg B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates apg141, 2agpg141, pg141, g3pg 0 LPLIPAL2ATG160 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:0 )" [c] : 2agpg160 + pg160 --> apg160 + g3pg B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg160, 2agpg160, g3pg, apg160 0 LPLIPAL2ATG161 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:1 )" [c] : 2agpg161 + pg161 --> apg161 + g3pg B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates g3pg, apg161, pg161, 2agpg161 0 LPLIPAL2ATG180 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:0 )" [c] : 2agpg180 + pg180 --> apg180 + g3pg B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg180, apg180, 2agpg180, g3pg 0 LPLIPAL2ATG181 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:1 )" [c] : 2agpg181 + pg181 --> apg181 + g3pg B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg181, apg181, g3pg, 2agpg181 0 LPLIPAL2E120 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C12:0 )" [c] : 2agpe120 + h2o --> ddca + g3pe + h B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpe120, ddca, g3pe 1 LPLIPAL2E140 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C14:0 )" [c] : 2agpe140 + h2o --> g3pe + h + ttdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe140, h, g3pe, ttdca 1 LPLIPAL2E141 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C14:1 )" [c] : 2agpe141 + h2o --> g3pe + h + ttdcea B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe141, ttdcea, g3pe, h 1 LPLIPAL2E160 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C16:0 )" [c] : 2agpe160 + h2o --> g3pe + h + hdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates hdca, h, 2agpe160, g3pe 1 LPLIPAL2E161 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C16:1 )" [c] : 2agpe161 + h2o --> g3pe + h + hdcea B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpe161, hdcea, g3pe 1 LPLIPAL2E180 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C18:0 )" [c] : 2agpe180 + h2o --> g3pe + h + ocdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, g3pe, 2agpe180, ocdca 1 LPLIPAL2E181 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C18:1 )" [c] : 2agpe181 + h2o --> g3pe + h + ocdcea B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, g3pe, ocdcea, 2agpe181 1 LPLIPAL2G120 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C12:0 )" [c] : 2agpg120 + h2o --> ddca + g3pg + h B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates 2agpg120, h, ddca, g3pg 1 LPLIPAL2G140 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C14:0 )" [c] : 2agpg140 + h2o --> g3pg + h + ttdca B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpg140, g3pg, ttdca 1 LPLIPAL2G141 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C14:1 )" [c] : 2agpg141 + h2o --> g3pg + h + ttdcea B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpg141, g3pg, ttdcea 1 LPLIPAL2G160 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C16:0 )" [c] : 2agpg160 + h2o --> g3pg + h + hdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates hdca, h, 2agpg160, g3pg 1 LPLIPAL2G161 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C16:1 )" [c] : 2agpg161 + h2o --> g3pg + h + hdcea B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, hdcea, 2agpg161, g3pg 1 LPLIPAL2G180 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C18:0 )" [c] : 2agpg180 + h2o --> g3pg + h + ocdca B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, g3pg, 2agpg180, ocdca 1 LPLIPAL2G181 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C18:1 )" [c] : 2agpg181 + h2o --> g3pg + h + ocdcea B3825 ( :UNMAPPED-CPDS ) LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpg181, ocdcea, g3pg 1 LSERDHr L-serine dehydrogenase [c] : nadp + ser-L <==> 2amsa + h + nadph B1539 ( RXN0-2201 ) RXN0-2201 :gene-match L-serine + NADP+ -> 2-aminomalonate-semialdehyde + NADPH + H+ 5 LYSabcpp L-lysine transport via ABC system ( periplasm ) atp[c] + h2o[c] + lys-L[p] --> adp[c] + h[c] + lys-L[c] + pi[c] ( B2310 AND B2307 AND B2306 AND B2308 ) ( ABC-3-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-3-RXN :gene-match L-lysine[periplasmic space] + ATP + H2O =L-lysine[cytosol] + ADP + phosphate h 5 LYSDC lysine decarboxylase [c] : h + lys-L --> 15dap + co2 ( B0186 OR B4131 ) ( LYSDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) LYSDECARBOX-RXN :gene-match L-lysine = CO2 + cadaverine h 3 LYSt2pp L-lysine transport in via proton symport ( periplasm ) h[p] + lys-L[p] --> h[c] + lys-L[c] B2156 ( TRANS-RXN-58 ) TRANS-RXN-58 :gene-match L-lysine[periplasmic space] + H+[periplasmic space] =L-lysine[cytosol] + H+[cytosol] 2 LYStex L-lysine transport via diffusion ( extracellular to periplasm ) lys-L[e] <==> lys-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da lys-L 0 LYSTRS Lysyl-tRNA synthetase [c] : atp + lys-L + trnalys --> amp + lystrna + ppi ( B2890 OR B4129 ) ( LYSINE--TRNA-LIGASE-RXN ) LYSINE--TRNA-LIGASE-RXN :gene-match L-lysine + tRNAlys + ATP = L-lysyl-tRNAlys + diphosphate + AMP 6 LYXI Lyxose isomerase [c] : lyx-L --> xylu-L B3903 ( LYXISOM-RXN ) LYXISOM-RXN :gene-match L-lyxose = L-xylulose 2 LYXt2pp L-Lyxose transport via proton symport ( periplasm ) h[p] + lyx-L[p] --> h[c] + lyx-L[c] B3907 TRANS-RXN-112 :gene-match H+[periplasmic space] + L-rhamnose[periplasmic space] =H+[cytosol] + L-rhamnose[cytosol] rmn lyx-L 1 LYXtex L-Lyxose transport via diffusion ( extracellular to periplasm ) lyx-L[e] <==> lyx-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da lyx-L 0 M1PD mannitol-1-phosphate 5-dehydrogenase [c] : mnl1p + nad <==> f6p + h + nadh B3600 ( MANNPDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) MANNPDEHYDROG-RXN :gene-match mannitol-1-phosphate + NAD+ = D-fructose-6-phosphate + NADH h 4 MACPD Malonyl-ACP decarboxylase [c] : h + malACP --> acACP + co2 B2323 ( MALONYL-ACPDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) MALONYL-ACPDECARBOX-RXN :gene-match malonyl-ACP = acetyl-ACP + CO2 h 3 MALDt2_2pp D-Malate transport via proton symport ( 2 H ) ( periplasm ) ( 2 ) h[p] + mal-D[p] --> ( 2 ) h[c] + mal-D[c] B3528 TRANS-RXN-121 :gene-match Na+[periplasmic space] + succinate[periplasmic space] =Na+[cytosol] + succinate[cytosol] succ, na1 h, mal-D 0 MALDtex D-Malate transport via diffusion ( extracellular to periplasm ) mal-D[e] <==> mal-D[p] ( B1377 OR B0929 OR B2215 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mal-D 0 MALS malate synthase [c] : accoa + glx + h2o --> coa + h + mal-L ( B4014 OR B2976 ) ( MALSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) MALSYN-RXN :gene-match acetyl-CoA + H2O + glyoxylate = malate + coenzyme A h 5 MALt2_2pp Malate transport via proton symport ( 2 H ) ( periplasm ) ( 2 ) h[p] + mal-L[p] --> ( 2 ) h[c] + mal-L[c] B3528 ( TRANS-RXN-121A ) TRANS-RXN-121A :gene-match Na+[periplasmic space] + malate[periplasmic space] =Na+[cytosol] + malate[cytosol] na1 h 1 MALt2_3pp Malate transport via proton symport ( 3 H ) ( periplasm ) ( 3 ) h[p] + mal-L[p] --> ( 3 ) h[c] + mal-L[c] ( B4138 OR B4123 ) ( TRANS-RXN-121A ) TRANS-RXN-106B :gene-match a C4-dicarboxylate[periplasmic space] + malate[cytosol] =malate[periplasmic space] + a C4-dicarboxylate[cytosol] C4-dicarboxylates h 1 MALTabcpp maltose transport via ABC system ( periplasm ) atp[c] + h2o[c] + malt[p] --> adp[c] + h[c] + malt[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ( ABC-16-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] h 5 MALTATr maltose O-acetyltransferase [c] : accoa + malt <==> acmalt + coa B0459 ( MALTACETYLTRAN-RXN ) MALTACETYLTRAN-RXN :gene-match maltose + acetyl-CoA = acetylmaltose + coenzyme A 4 MALtex Malate transport via diffusion ( extracellular to periplasm ) mal-L[e] <==> mal-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mal-L 0 MALTHXabcpp maltohexaose transport via ABC system ( periplasm ) atp[c] + h2o[c] + malthx[p] --> adp[c] + h[c] + malthx[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt malthx, h 4 MALTHXtexi maltohexaose transport via diffusion ( extracellular to periplasm ) irreversible malthx[e] --> malthx[p] B4036 RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt malthx 0 MALTPTabcpp maltopentaose transport via ABC system ( periplasm ) atp[c] + h2o[c] + maltpt[p] --> adp[c] + h[c] + maltpt[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, maltpt 4 MALTptspp maltose transport via PEP:Pyr PTS ( periplasm ) malt[p] + pep[c] --> malt6p[c] + pyr[c] ( B2417 AND B1621 AND B2415 AND B2416 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate sbt6p, sbt-D malt, malt6p 2 MALTPTtexi maltopentaoseMaltotriose transport via diffusion ( extracellular to periplasm ) irreversible maltpt[e] --> maltpt[p] B4036 RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt maltpt 0 MALTtexi maltoseMaltotriose transport via diffusion ( extracellular to periplasm ) irreversible malt[e] --> malt[p] B4036 ( RXN0-1741 ) RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] 1 MALTTRabcpp Maltotriose transport via ABC system ( periplasm ) atp[c] + h2o[c] + malttr[p] --> adp[c] + h[c] + malttr[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, malttr 4 MALTTRtexi Maltotriose transport via diffusion ( extracellular to periplasm ) irreversible malttr[e] --> malttr[p] B4036 ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt malttr 0 MALTTTRabcpp maltotetraose transport via ABC system ( periplasm ) atp[c] + h2o[c] + maltttr[p] --> adp[c] + h[c] + maltttr[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, maltttr 4 MALTTTRtexi maltotetraoseMaltotriose transport via diffusion ( extracellular to periplasm ) irreversible maltttr[e] --> maltttr[p] B4036 ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt maltttr 0 MAN1PT2 mannose-1-phosphate guanylyltransferase ( GDP ) [c] : gdp + h + man1p --> gdpmann + pi B2049 ( MANNPGUANYLTRANGDP-RXN ) ( ( LEFT REMOVE PROTON ) ) MANNPGUANYLTRANGDP-RXN :gene-match alpha-D-mannose 1-phosphate + GDP = GDP-D-mannose + phosphate h 4 MAN6PI mannose-6-phosphate isomerase [c] : man6p <==> f6p B1613 ( MANNPISOM-RXN ) MANNPISOM-RXN :gene-match mannose-6-phosphate = D-fructose-6-phosphate 2 MAN6Pt6_2pp Mannose-6-phosphate transport via phosphate antiport ( periplasm ) man6p[p] + ( 2 ) pi[c] --> man6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h, g6p man6p, pi 0 MAN6Ptex Mannose 6-phosphate transport via diffusion ( extracellular to periplasm ) man6p[e] <==> man6p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da man6p 0 MANAO Mannonate oxidoreductase [c] : mana + nad <==> fruur + h + nadh B4323 ( MANNONOXIDOREDUCT-RXN ) ( ( RIGHT REMOVE PROTON ) ) MANNONOXIDOREDUCT-RXN :gene-match NAD+ + D-mannonate = NADH + fructuronate h 4 MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS ( periplasm ) manglyc[p] + pep[c] --> man6pglyc[c] + pyr[c] ( B0731 AND B2415 AND B2416 ) ( :UNMAPPED-CPDS ) RXN0-2522 :gene-match phosphoenolpyruvate + 2-O-alpha-mannosyl-D-glycerate[periplasmic space] =2-(alpha-D-mannosyl)-3-phosphoglycerate[cytosol] + pyruvate ALPHA-D-MANNOSYL-3-PHOSPHOGLYCERATE man6pglyc 3 MANGLYCtex 2-O-alpha-mannosyl-D-glycerate transport via diffusion ( extracellular to periplasm ) manglyc[e] <==> manglyc[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da manglyc 0 MANptspp D-mannose transport via PEP:Pyr PTS ( periplasm ) man[p] + pep[c] --> man6p[c] + pyr[c] ( B1817 AND B1818 AND B1819 AND B2415 AND B2416 ) ( TRANS-RXN-165 ) TRANS-RXN-165 :gene-match phosphoenolpyruvate + mannose[periplasmic space] =mannose-6-phosphate[cytosol] + pyruvate 4 MANtex D-mannose transport via diffusion ( extracellular to periplasm ) man[e] <==> man[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da man 0 MCITD 2-methylcitrate dehydratase [c] : 2mcit --> 2mcacn + h2o B0334 ( 2-METHYLCITRATE-DEHYDRATASE-RXN ) 2-METHYLCITRATE-DEHYDRATASE-RXN :gene-match 2-methylcitrate = H2O + 2-methyl-cis-aconitate 3 MCITL2 methylisocitrate lyase [c] : micit <==> pyr + succ B0331 ( METHYLISOCITRATE-LYASE-RXN ) METHYLISOCITRATE-LYASE-RXN :gene-match methylisocitrate = succinate + pyruvate 3 MCITS 2-methylcitrate synthase [c] : h2o + oaa + ppcoa --> 2mcit + coa + h B0333 ( 2-METHYLCITRATE-SYNTHASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2-METHYLCITRATE-SYNTHASE-RXN :gene-match oxaloacetate + H2O + propionyl-CoA = 2-methylcitrate + coenzyme A h 5 MCOATA Malonyl-CoA-ACP transacylase [c] : ACP + malcoa <==> coa + malACP ( B1094 AND B1092 ) ( MALONYL-COA-ACP-TRANSACYL-RXN ) MALONYL-COA-ACP-TRANSACYL-RXN :gene-match acyl carrier protein + malonyl-CoA = malonyl-ACP + coenzyme A 4 MCPST 3-mercaptopyruvate sulfurtransferase [c] : cyan + mercppyr --> h + pyr + tcynt B2521 ( MERCAPYSTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) MERCAPYSTRANS-RXN :gene-match hydrogen cyanide + 3-mercaptopyruvate -> pyruvate + thiocyanate h 4 MCTP1App murein crosslinking transpeptidase 1A:( A2pm->D-ala ) ( periplasm ) [p] : murein5p5p --> ala-D + murein5px4p ( B0084 OR B0635 OR B0149 OR B3396 ) ( :UNMAPPED-CPDS ) PEPTIDOGLYCAN-GLYCOSYLTRANSFERASE-RXN :gene-match N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol = [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol + undecaprenyl diphosphate [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol, [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol, udcpdp, uaagmda ala-D, murein5px4p, murein5p5p 0 MCTP1Bpp murein crosslinking transpeptidase 1B:( A2pm->A2pm ) ( periplasm ) [p] : murein5p5p --> alaala + murein5px3p ( B0149 OR B3396 ) ( :UNMAPPED-CPDS ) PEPTIDOGLYCAN-GLYCOSYLTRANSFERASE-RXN :gene-match N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol = [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol + undecaprenyl diphosphate [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol, [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol, udcpdp, uaagmda murein5p5p, alaala, murein5px3p 0 MCTP2App murein crosslinking transpeptidase 1A:( A2pm->D-ala ) ( periplasm ) [p] : murein5p5p5p --> ( 2 ) ala-D + murein5px4px4p ( B0084 OR B0635 OR B3396 OR B0149 ) ( :UNMAPPED-CPDS ) PEPTIDOGLYCAN-GLYCOSYLTRANSFERASE-RXN :gene-match N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol = [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol + undecaprenyl diphosphate [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol, [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol, udcpdp, uaagmda murein5px4px4p, ala-D, murein5p5p5p 0 MDDCP1pp "murein D,D-carboxypeptidase ( murein5px4p ) ( periplasm )" [p] : h2o + murein5px4p --> ala-D + murein4px4p ( B0632 OR B3182 OR B0839 OR B2010 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine alaala murein5px4p, murein4px4p 2 MDDCP2pp "murein D,D-carboxypeptidase ( murein5px4px4p ) ( periplasm )" [p] : h2o + murein5px4px4p --> ala-D + murein4px4px4p ( B0632 OR B3182 OR B0839 OR B2010 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine alaala murein5px4px4p, murein4px4px4p 2 MDDCP3pp "murein D,D-carboxypeptidase ( murein5p5p ) ( periplasm )" [p] : h2o + murein5p5p --> ala-D + murein5p4p ( B0632 OR B3182 OR B0839 OR B2010 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine alaala murein5p4p, murein5p5p 2 MDDCP4pp "murein D,D-carboxypeptidase ( murein5p4p ) ( periplasm )" [p] : h2o + murein5p4p --> ala-D + murein4p4p ( B0632 OR B3182 OR B0839 OR B2010 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine alaala murein5p4p, murein4p4p 2 MDDCP5pp "murein D,D-carboxypeptidase ( murein5p3p ) ( periplasm )" [p] : h2o + murein5p3p --> ala-D + murein4p3p ( B0632 OR B3182 OR B0839 OR B2010 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine alaala murein5p3p, murein4p3p 2 MDDEP1pp "murein D,D-endopeptidase ( murein4px4p ) ( periplasm )" [p] : h2o + murein4px4p --> murein4p4p ( B3182 OR B2328 OR B2134 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine ala-D, alaala murein4p4p, murein4px4p 1 MDDEP2pp "murein D,D-endopeptidase ( murein3px4p ) ( periplasm )" [p] : h2o + murein3px4p --> murein4p3p ( B3182 OR B2328 OR B2134 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine ala-D, alaala murein3px4p, murein4p3p 1 MDDEP3pp "murein D,D-endopeptidase ( murein5px4p ) ( periplasm )" [p] : h2o + murein5px4p --> murein5p4p ( B3182 OR B2328 OR B2134 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine ala-D, alaala murein5p4p, murein5px4p 1 MDDEP4pp "murein D,D-endopeptidase ( murein4px4px4p ) ( periplasm )" [p] : h2o + murein4px4px4p --> murein4px4p4p ( B3182 OR B2328 OR B2134 ) ( :UNMAPPED-CPDS ) 3.4.16.4-RXN :gene-match D-alanyl-D-alanine + H2O = 2 D-alanine ala-D, alaala murein4px4p4p, murein4px4px4p 1 MDH malate dehydrogenase [c] : mal-L + nad <==> h + nadh + oaa B3236 ( MALATE-DEH-RXN ) ( ( RIGHT REMOVE PROTON ) ) MALATE-DEH-RXN :gene-match malate + NAD+ = oxaloacetate + NADH h 4 MDH2 Malate dehydrogenase ( ubiquinone 8 as acceptor ) [c] : mal-L + q8 --> oaa + q8h2 B2210 MALATE-DEHYDROGENASE-(ACCEPTOR)-RXN :gene-match an acceptor + malate -> a reduced acceptor + oxaloacetate Donor-H2, Acceptor q8, q8h2 2 MDH3 Malate dehydrogenase ( menaquinone 8 as acceptor ) [c] : mal-L + mqn8 --> mql8 + oaa B2210 ( RXNI-3 ) ( :METACYC ) MALATE-DEHYDROGENASE-(ACCEPTOR)-RXN :gene-match an acceptor + malate -> a reduced acceptor + oxaloacetate Donor-H2, Acceptor mqn8, mql8 2 ME1 malic enzyme ( NAD ) [c] : mal-L + nad --> co2 + nadh + pyr B1479 ( MALIC-NAD-RXN ) MALIC-NAD-RXN :gene-match NAD+ + malate = NADH + CO2 + pyruvate 5 ME2 malic enzyme ( NADP ) [c] : mal-L + nadp --> co2 + nadph + pyr B2463 ( MALIC-NADP-RXN ) MALIC-NADP-RXN :gene-match NADP+ + malate = NADPH + CO2 + pyruvate 5 MECDPDH2 "2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase" [c] : 2mecdp + nadh --> h2mb4p + h2o + nad B2515 RXN0-882 :gene-match 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + H2O + a protein disulfide = 2-C-methyl-D-erythritol-2,4-cyclodiphosphate + a protein dithiol Protein-Dithiols, Protein-Disulfides nadh, nad 3 MECDPS "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" [c] : 2p4c2me --> 2mecdp + cmp B2746 ( RXN0-302 ) RXN0-302 :gene-match 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol = CMP + 2-C-methyl-D-erythritol-2,4-cyclodiphosphate 3 MELIBt2pp melibiose transport in via symport ( periplasm ) h[p] + melib[p] --> h[c] + melib[c] B4120 ( TRANS-RXN-94 ) TRANS-RXN-94 :gene-match H+[periplasmic space] + melibiose[periplasmic space] =H+[cytosol] + melibiose[cytosol] 2 MELIBt3ipp melibiose transport in via antiport ( periplasm ) h[p] + melib[c] --> h[c] + melib[p] B1528 TRANS-RXN-40 :gene-match alpha-L-arabinose[cytosol] + H+[periplasmic space] =alpha-L-arabinose[periplasmic space] + H+[cytosol] ARABINOSE melib 1 MELIBtex melibiose transport via diffusion ( extracellular to periplasm ) melib[e] <==> melib[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da melib 0 MEPCT 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [c] : 2me4p + ctp + h --> 4c2me + ppi B2747 ( 2.7.7.60-RXN ) ( ( LEFT REMOVE PROTON ) ) 2.7.7.60-RXN :gene-match 2-C-methyl-D-erythritol-4-phosphate + CTP = 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + diphosphate h 4 METabcpp L-methionine transport via ABC system ( periplasm ) atp[c] + h2o[c] + met-L[p] --> adp[c] + h[c] + met-L[c] + pi[c] ( B0198 AND B0199 AND B0197 ) ( RXN0-4522 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-4522 :gene-match H2O + ATP + L-methionine[periplasmic space] =phosphate + ADP + L-methionine[cytosol] h 5 METAT methionine adenosyltransferase [c] : atp + h2o + met-L --> amet + pi + ppi B2942 ( S-ADENMETSYN-RXN ) S-ADENMETSYN-RXN :gene-match ATP + L-methionine + H2O = phosphate + diphosphate + S-adenosyl-L-methionine 6 METDabcpp D-methionine transport via ABC system ( periplasm ) atp[c] + h2o[c] + met-D[p] --> adp[c] + h[c] + met-D[c] + pi[c] ( B0198 AND B0199 AND B0197 ) ( TRANS-RXN0-202 ) ( ( RIGHT REMOVE PROTON ) ) TRANS-RXN0-202 :gene-match H2O + ATP + D-methionine[periplasmic space] =phosphate + ADP + D-methionine[cytosol] h 5 METDtex D-methionine transport via diffusion ( extracellular to periplasm ) met-D[e] <==> met-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da met-D 0 METS methionine synthase [c] : 5mthf + hcys-L --> h + met-L + thf ( B4019 OR B3829 ) ( HOMOCYSMETB12-RXN ) ( ( RIGHT REMOVE PROTON ) ) HOMOCYSMETB12-RXN :gene-match L-homocysteine + 5-methyl-THF = L-methionine + tetrahydrofolate h 4 METSOX1tex L-methionine S-oxide diffusion ( extracellular ) metsox-S-L[e] <==> metsox-S-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da metsox-S-L 0 METSOX2tex L-methionine R-oxide diffusion ( extracellular ) metsox-R-L[e] <==> metsox-R-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da metsox-R-L 0 METSOXR1 L-methionine-S-oxide reductase [c] : metsox-S-L + trdrd --> h2o + met-L + trdox ( ( B4219 AND B2582 ) OR ( B4219 AND B3781 ) ) ( METHIONINE-S-OXIDE-REDUCTASE-RXN ) ( :EXPANDED-RXN-MATCH ) METHIONINE-S-OXIDE-REDUCTASE-RXN :gene-match a thioredoxin disulfide + L-methionine + H2O = a reduced thioredoxin + L-methionine sulfoxide Red-Thioredoxin, Ox-Thioredoxin trdrd, trdox 3 METSOXR2 L-methionine-R-sulfoxide reductase [c] : metsox-R-L + trdrd --> h2o + met-L + trdox ( ( B1778 AND B2582 ) OR ( B1778 AND B3781 ) ) ( :UNMAPPED-CPDS ) METHIONINE-S-OXIDE-REDUCTASE-RXN :gene-match a thioredoxin disulfide + L-methionine + H2O = a reduced thioredoxin + L-methionine sulfoxide Red-Thioredoxin, Ox-Thioredoxin, metsox-S-L metsox-R-L, trdrd, trdox 2 METtex L-methionine transport via diffusion ( extracellular to periplasm ) met-L[e] <==> met-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da met-L 0 METTRS Methionyl-tRNA synthetase [c] : atp + met-L + trnamet --> amp + mettrna + ppi B2114 ( METHIONINE--TRNA-LIGASE-RXN ) METHIONINE--TRNA-LIGASE-RXN :gene-match tRNAmet + L-methionine + ATP = L-methionyl-tRNAmet + diphosphate + AMP 6 MG2tex magnesium ( Mg+2 ) transport via diffusion ( extracellular to periplasm ) mg2[e] <==> mg2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mg2 0 MG2tpp magnesium ( +2 ) transport in via diffusion mg2[p] --> mg2[c] B3816 ( TRANS-RXN-141 ) TRANS-RXN-141 :gene-match Mg2+[periplasmic space] =Mg2+[cytosol] 1 MG2uabcpp "Magnesium ( Mg+2 ) ABC transporter ( ubtake, periplasm )" atp[c] + h2o[c] + mg2[p] --> adp[c] + h[c] + mg2[c] + pi[c] B4242 ( TRANS-RXN-250 ) ( ( RIGHT REMOVE PROTON ) ) TRANS-RXN-250 :gene-match Mg2+[periplasmic space] + ATP + H2O =Mg2+[cytosol] + ADP + phosphate h 5 MGSA methylglyoxal synthase [c] : dhap --> mthgxl + pi B0963 ( METHGLYSYN-RXN ) METHGLYSYN-RXN :gene-match dihydroxy-acetone-phosphate -> methylglyoxal + phosphate 3 MI1PP myo-inositol 1-phosphatase [c] : h2o + mi1p-D --> inost + pi B2533 ( RXN-7252 ) ( :METACYC ) MYO-INOSITOL-1(OR-4)-MONOPHOSPHATASE-RXN :gene-match H2O + D-myo-inositol (3)-monophosphate = phosphate + myo-inositol 1-L-MYO-INOSITOL-1-P mi1p-D 3 MICITD 2-methylisocitrate dehydratase [c] : 2mcacn + h2o --> micit B0118 ( 4.2.1.99-RXN ) 4.2.1.99-RXN :gene-match methylisocitrate = 2-methyl-cis-aconitate + H2O 3 MLTG1 Maltodextrin glucosidase ( maltotriose ) [c] : h2o + malttr --> glc-D + malt B0403 ( RXN0-5183 ) MALTET-RXN :gene-match maltotetraose + H2O = maltotriose + beta-D-glucose GLC, maltttr malt, glc-D 2 MLTG2 Maltodextrin glucosidase ( maltotetraose ) [c] : h2o + maltttr --> glc-D + malttr B0403 ( MALTET-RXN ) ( :METACYC ) MALTET-RXN :gene-match maltotetraose + H2O = maltotriose + beta-D-glucose GLC glc-D 3 MLTG3 Maltodextrin glucosidase ( maltopentaose ) [c] : h2o + maltpt --> glc-D + maltttr B0403 MALTET-RXN :gene-match maltotetraose + H2O = maltotriose + beta-D-glucose GLC, malttr maltpt, glc-D 2 MLTG4 Maltodextrin glucosidase ( maltohexaose ) [c] : h2o + malthx --> glc-D + maltpt B0403 MALTODEXGLUCOSID-RXN :gene-match H2O + (1,4-alpha-D-glucosyl)(N) = (1,4-alpha-D-glucosyl)(n-1) + alpha-D-glucose 14glucan, ALPHA-GLUCOSE malthx, maltpt, glc-D 1 MLTG5 Maltodextrin glucosidase ( maltoheptaose ) [c] : h2o + malthp --> glc-D + malthx B0403 MALTODEXGLUCOSID-RXN :gene-match H2O + (1,4-alpha-D-glucosyl)(N) = (1,4-alpha-D-glucosyl)(n-1) + alpha-D-glucose 14glucan, ALPHA-GLUCOSE malthp, malthx, glc-D 1 MLTP1 Maltodextrin phosphorylase ( maltopentaose ) [c] : maltpt + pi <==> g1p + maltttr B3417 MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790 maltpt 3 MLTP2 Maltodextrin phosphorylase ( maltohexaose ) [c] : malthx + pi <==> g1p + maltpt B3417 MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790, maltttr malthx, maltpt 2 MLTP3 Maltodextrin phosphorylase ( maltoheptaose ) [c] : malthp + pi <==> g1p + malthx B3417 MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790, maltttr malthp, malthx 2 MMCD Methylmalonyl-CoA decarboxylase [c] : h + mmcoa-S --> co2 + ppcoa B2919 ( METHYLMALONYL-COA-DECARBOXYLASE-RXN ) ( :METACYC ( LEFT REMOVE PROTON ) ) RXN0-310 :gene-match (R)-methylmalonyl-CoA = propionyl-CoA + CO2 mmcoa-R h, mmcoa-S 2 MMETtex S-methyl-L-methionine transport via diffusion ( extracellular to periplasm ) mmet[e] <==> mmet[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mmet 0 MMM2 Methylmalonyl-CoA mutase [c] : succoa --> mmcoa-R B2917 ( METHYLMALONYL-COA-MUT-RXN ) METHYLMALONYL-COA-MUT-RXN :gene-match (R)-methylmalonyl-CoA = succinyl-CoA 2 MN2t3pp manganese ( Mn+2 ) transport out via proton antiport ( periplasm ) h[p] + mn2[c] --> h[c] + mn2[p] ( B3915 OR B0752 ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 mn2 1 MN2tpp manganese transport in via permease ( no H+ ) mn2[p] --> mn2[c] B3040 RXN0-16 :gene-match Mn2+[periplasmic space] =Mn2+[cytoplasm] 1 MN6PP mannose 6-phosphate phosphatase [c] : h2o + man6p --> man + pi B0822 ( SUGAR-PHOSPHATASE-RXN ) ( :EXPANDED-RXN-MATCH ) SUGAR-PHOSPHATASE-RXN :gene-match H2O + a sugar phosphate = a sugar + phosphate Sugar-Phosphate, Sugar man6p, man 2 MNLptspp mannitol transport via PEP:Pyr PTS ( periplasm ) mnl[p] + pep[c] --> mnl1p[c] + pyr[c] ( B3599 AND B2415 AND B2416 ) ( TRANS-RXN-156 ) TRANS-RXN-156 :gene-match phosphoenolpyruvate + mannitol[periplasmic space] =mannitol-1-phosphate[cytosol] + pyruvate 4 MNLtex mannitol transport via diffusion ( extracellular to periplasm ) mnl[e] <==> mnl[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mnl 0 MNNH D-mannonate hydrolyase [c] : mana --> 2ddglcn + h2o B4322 ( MANNONDEHYDRAT-RXN ) MANNONDEHYDRAT-RXN :gene-match D-mannonate -> H2O + 2-dehydro-3-deoxy-D-gluconate 3 MNt2pp manganese ( Mn+2 ) transport in via proton symport ( periplasm ) h[p] + mn2[p] --> h[c] + mn2[c] B2392 ( TRANS-RXN-241 ) TRANS-RXN-241 :gene-match Mn2+[periplasmic space] + H+[periplasmic space] =Mn2+[cytosol] + H+[cytosol] 2 MNtex Manganese ( Mn+2 ) transport via diffusion ( extracellular to periplasm ) mn2[e] <==> mn2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mn2 0 MOAT 3-deoxy-D-manno-octulosonic acid transferase [c] : ckdo + lipidA --> cmp + h + kdolipid4 B3633 ( KDOTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) KDOTRANS-RXN :gene-match CMP-3-deoxy-D-manno-octulosonate + lipid IVA = (KDO)-lipid IVA + CMP h 4 MOAT2 3-deoxy-D-manno-octulosonic acid transferase [c] : ckdo + kdolipid4 --> cmp + h + kdo2lipid4 B3633 ( KDOTRANS2-RXN ) ( ( RIGHT REMOVE PROTON ) ) KDOTRANS2-RXN :gene-match (KDO)-lipid IVA + CMP-3-deoxy-D-manno-octulosonate = KDO2-lipid IVA + CMP h 4 MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III ( LPS core biosynthesis ) [c] : ckdo + phphhlipa --> cmp + h + kphphhlipa B3624 ( :UNMAPPED-CPDS ) RXN0-5128 :gene-match a lipopolysaccharide + CMP-3-deoxy-D-manno-octulosonate = KDOIII-lipopolysaccharide + CMP CPD0-942, Lipopolysaccharides h, phphhlipa, kphphhlipa 2 MOBDabcpp molybdate transport via ABC system ( periplasm ) atp[c] + h2o[c] + mobd[p] --> adp[c] + h[c] + mobd[c] + pi[c] ( B0763 AND B0764 AND B0765 AND B0760 ) ( ABC-19-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-19-RXN :gene-match ATP + MoO42-[periplasmic space] + H2O =ADP + phosphate + MoO42-[cytosol] h 5 MOBDtex molybdate transport via diffusion ( extracellular to periplasm ) mobd[e] <==> mobd[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mobd 0 MOHMT 3-methyl-2-oxobutanoate hydroxymethyltransferase [c] : 3mob + h2o + mlthf --> 2dhp + thf B0134 ( 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN ) 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN :gene-match H2O + 2-keto-isovalerate + 5,10-methylene-THF = 2-dehydropantoate + tetrahydrofolate 5 MPTG murein polymerizing transglycosylase ( 2 ) uaagmda[c] --> ( 2 ) h[c] + murein5p5p[p] + ( 2 ) udcpdp[c] ( B0149 OR B3396 OR B2519 ) ( :UNMAPPED-CPDS ) PEPTIDOGLYCAN-GLYCOSYLTRANSFERASE-RXN :gene-match N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol = [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol + undecaprenyl diphosphate [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol, [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol h, murein5p5p 2 MPTG2 murein polymerizing transglycosylase 2 ( three linked units ) murein5p5p[p] + uaagmda[c] --> h[c] + murein5p5p5p[p] + udcpdp[c] ( B0149 OR B2519 OR B3396 ) ( :UNMAPPED-CPDS ) PEPTIDOGLYCAN-GLYCOSYLTRANSFERASE-RXN :gene-match N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptane-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol = [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol + undecaprenyl diphosphate [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-diphosphoundecaprenol, [GlcNAc-(14)-Mur2Ac(oyl-L-Ala-g-D-Glu-L-Lys-D-Ala-D-Ala)]n-diphosphoundecaprenol h, murein5p5p, murein5p5p5p 2 MSO3tex methanesulfonate transport via diffusion ( extracellular to periplasm ) mso3[e] <==> mso3[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da mso3 0 MTAN methylthioadenosine nucleosidase [c] : 5mta + h2o --> 5mtr + ade B0159 ( METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN ) ( :METACYC ) ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN :gene-match S-adenosyl-L-homocysteine + H2O -> S-ribosyl-L-homocysteine + adenine rhcys, ahcys 5mtr, 5mta 2 MTHFC methenyltetrahydrofolate cyclohydrolase [c] : h2o + methf <==> 10fthf + h B0529 ( METHENYLTHFCYCLOHYDRO-RXN ) ( ( RIGHT REMOVE PROTON ) ) METHENYLTHFCYCLOHYDRO-RXN :gene-match H2O + 5,10-methenyl-THF = N10-formyl-THF h 3 MTHFD methylenetetrahydrofolate dehydrogenase ( NADP ) [c] : mlthf + nadp <==> methf + nadph B0529 ( METHYLENETHFDEHYDROG-NADP-RXN ) METHYLENETHFDEHYDROG-NADP-RXN :gene-match NADP+ + 5,10-methylene-THF = NADPH + 5,10-methenyl-THF 4 MTHFR2 "5,10-methylenetetrahydrofolate reductase ( NADH )" [c] : ( 2 ) h + mlthf + nadh --> 5mthf + nad B3941 ( 1.5.1.20-RXN ) ( :EXPANDED-RXN-MATCH ) 1.5.1.20-RXN :gene-match 5-methyl-THF + NAD(P)+ = 5,10-methylene-THF + NAD(P)H + H+ NAD(P), NAD(P)H nadh, nad 3 MTRPOX N-methyltryptophan oxidase [c] : Nmtrp + h2o + o2 --> fald + h2o2 + trp-L B1059 ( RXN0-301 ) RXN0-301 :gene-match O2 + H2O + N-methyltryptophan = L-tryptophan + H2O2 + formaldehyde 6 N2Otex nitrious oxide transport via diffusion ( extracellular to periplasm ) n2o[e] <==> n2o[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da n2o 0 NACODA N-acetylornithine deacetylase [c] : acg5sa + h2o --> ac + glu5sa B3957 ACETYLORNDEACET-RXN :gene-match N-acetyl-L-ornithine + H2O = L-ornithine + acetate orn, acorn glu5sa, acg5sa 2 NACtex Nicotinic acid transport via diffusion ( extracellular to periplasm ) nac[e] <==> nac[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da nac 0 NADDP NAD diphosphatase [c] : h2o + nad --> amp + ( 2 ) h + nmn ( B2411 OR B3996 ) ( NADPYROPHOSPHAT-RXN ) ( ( RIGHT REMOVE PROTON ) ) NADPYROPHOSPHAT-RXN :gene-match H2O + NAD+ = nicotinamide mononucleotide + AMP h 4 NADH10 NADH dehydrogenase ( menaquinone-8 & 0 protons ) [c] : h + mqn8 + nadh --> mql8 + nad B1109 ( NQOR-RXN ) ( :EXPANDED-RXN-MATCH ) NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ q8, q8h2 mqn8, h, mql8 2 NADH16pp NADH dehydrogenase ( ubiquinone-8 & 3 protons ) ( periplasm ) ( 4 ) h[c] + nadh[c] + q8[c] --> ( 3 ) h[p] + nad[c] + q8h2[c] ( B2276 AND B2277 AND B2278 AND B2279 AND B2280 AND B2281 AND B2282 AND B2283 AND B2284 AND B2285 AND B2286 AND B2287 AND B2288 ) ( NADH-DEHYDROG-A-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ h 4 NADH17pp NADH dehydrogenase ( menaquinone-8 & 3 protons ) ( periplasm ) ( 4 ) h[c] + mqn8[c] + nadh[c] --> ( 3 ) h[p] + mql8[c] + nad[c] ( B2276 AND B2277 AND B2278 AND B2279 AND B2280 AND B2281 AND B2282 AND B2283 AND B2284 AND B2285 AND B2286 AND B2287 AND B2288 ) ( NQOR-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ q8, q8h2 mqn8, h, mql8 2 NADH18pp NADH dehydrogenase ( demethylmenaquinone-8 & 3 protons ) ( periplasm ) 2dmmq8[c] + ( 4 ) h[c] + nadh[c] --> 2dmmql8[c] + ( 3 ) h[p] + nad[c] ( B2276 AND B2277 AND B2278 AND B2279 AND B2280 AND B2281 AND B2282 AND B2283 AND B2284 AND B2285 AND B2286 AND B2287 AND B2288 ) NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ q8, q8h2 2dmmq8, 2dmmql8, h 2 NADH5 NADH dehydrogenase ( ubiquinone-8 ) [c] : h + nadh + q8 --> nad + q8h2 B1109 ( NADH-DEHYDROG-A-RXN ) ( ( LEFT REMOVE PROTON ) ) NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ h 4 NADH9 NADH dehydrogenase ( demethylmenaquinone-8 & 0 protons ) [c] : 2dmmq8 + h + nadh --> 2dmmql8 + nad B1109 NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ q8, q8h2 2dmmq8, 2dmmql8, h 2 NADK NAD kinase [c] : atp + nad --> adp + h + nadp B2615 ( NAD-KIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) NAD-KIN-RXN :gene-match NAD+ + ATP = NADP+ + ADP h 4 NADPHQR2 NADPH Quinone Reductase ( Ubiquinone-8 ) [c] : h + nadph + q8 --> nadp + q8h2 B3028 NADPH-DEHYDROGENASE-(QUINONE)-RXN :gene-match an acceptor + NADPH = a reduced acceptor + NADP+ Donor-H2, Acceptor h, q8h2, q8 2 NADPHQR3 NADPH Quinone Reductase ( Menaquinone-8 ) [c] : h + mqn8 + nadph --> mql8 + nadp B3028 ( NQOR-RXN ) ( :EXPANDED-RXN-MATCH ) NADPH-DEHYDROGENASE-(QUINONE)-RXN :gene-match an acceptor + NADPH = a reduced acceptor + NADP+ Donor-H2, Acceptor mqn8, h, mql8 2 NADPHQR4 NADPH Quinone Reductase ( 2-Demethylmenaquinone-8 ) [c] : 2dmmq8 + h + nadph --> 2dmmql8 + nadp B3028 NADPH-DEHYDROGENASE-(QUINONE)-RXN :gene-match an acceptor + NADPH = a reduced acceptor + NADP+ Donor-H2, Acceptor 2dmmq8, 2dmmql8, h 2 NADS1 NAD synthase ( nh3 ) [c] : atp + dnad + nh4 --> amp + h + nad + ppi B1740 ( NAD-SYNTH-NH3-RXN ) ( ( LEFT SUBSTITUTE AMMONIA AMMONIUM ) ( RIGHT REMOVE PROTON ) ) NAD-SYNTH-NH3-RXN :gene-match ATP + deamido-NAD + ammonia = AMP + diphosphate + NAD+ AMMONIA h, nh4 5 NADTRHD NAD transhydrogenase [c] : nad + nadph --> nadh + nadp ( B3962 OR ( B1602 AND B1603 ) ) ( 1.6.1.2-RXN PYRNUTRANSHYDROGEN-RXN ) 1.6.1.2-RXN :gene-match NAD+ + NADPH = NADH + NADP+ 4 NAMNPP nicotinic acid mononucleotide pyrophosphorylase [c] : atp + h2o + nac + prpp --> adp + nicrnt + pi + ppi B0931 NICOTINATEPRIBOSYLTRANS-RXN :gene-match nicotinate nucleotide + diphosphate = nicotinate + 5-phosphoribosyl 1-pyrophosphate h2o, pi, adp, atp 4 NAt3_1p5pp sodium proton antiporter ( H:NA is 1.5 ) ( periplasm ) ( 3 ) h[p] + ( 2 ) na1[c] --> ( 3 ) h[c] + ( 2 ) na1[p] B1186 ( TRANS-RXN-129 TRANS-RXN-101 TRANS-RXN-130 ) TRANS-RXN-130 :gene-match 3 H+[periplasmic space] + 2 Na+[cytosol] =2 Na+[periplasmic space] + 3 H+[cytosol] 2 NAt3_2pp sodium proton antiporter ( H:NA is 2 ) ( periplasm ) ( 2 ) h[p] + na1[c] --> ( 2 ) h[c] + na1[p] B0019 ( TRANS-RXN-129 TRANS-RXN-101 TRANS-RXN-130 ) TRANS-RXN-129 :gene-match Na+[cytosol] + 2 H+[periplasmic space] =Na+[periplasmic space] + 2 H+[cytosol] 2 NAt3pp sodium transport out via proton antiport ( cytoplasm to periplasm ) h[p] + na1[c] --> h[c] + na1[p] ( B0842 OR B1216 ) ( TRANS-RXN-129 TRANS-RXN-101 TRANS-RXN-130 ) TRANS-RXN-101 :gene-match Na+[cytosol] + H+[periplasmic space] =H+[cytosol] + Na+[periplasmic space] 2 NAtex sodium transport via diffusion ( extracellular to periplasm ) na1[e] <==> na1[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da na1 0 NDPK1 nucleoside-diphosphate kinase ( ATP:GDP ) [c] : atp + gdp <==> adp + gtp ( B2518 OR B0474 ) ( GDPKIN-RXN ) GDPKIN-RXN :gene-match GDP + ATP = GTP + ADP 4 NDPK2 nucleoside-diphosphate kinase ( ATP:UDP ) [c] : atp + udp <==> adp + utp ( B2518 OR B0474 ) ( UDPKIN-RXN ) UDPKIN-RXN :gene-match UDP + ATP = UTP + ADP 4 NDPK3 nucleoside-diphosphate kinase ( ATP:CDP ) [c] : atp + cdp <==> adp + ctp ( B2518 OR B0474 ) ( CDPKIN-RXN ) CDPKIN-RXN :gene-match CDP + ATP = CTP + ADP 4 NDPK4 nucleoside-diphosphate kinase ( ATP:dTDP ) [c] : atp + dtdp <==> adp + dttp ( B2518 OR B0474 ) ( DTDPKIN-RXN ) DTDPKIN-RXN :gene-match dTDP + ATP = dTTP + ADP 4 NDPK5 nucleoside-diphosphate kinase ( ATP:dGDP ) [c] : atp + dgdp <==> adp + dgtp ( B2518 OR B0474 ) ( DGDPKIN-RXN ) DGDPKIN-RXN :gene-match dGDP + ATP = dGTP + ADP 4 NDPK6 nucleoside-diphosphate kinase ( ATP:dUDP ) [c] : atp + dudp <==> adp + dutp ( B2518 OR B0474 ) ( DUDPKIN-RXN ) DUDPKIN-RXN :gene-match dUDP + ATP = dUTP + ADP 4 NDPK7 nucleoside-diphosphate kinase ( ATP:dCDP ) [c] : atp + dcdp <==> adp + dctp ( B2518 OR B0474 ) ( DCDPKIN-RXN ) DCDPKIN-RXN :gene-match dCDP + ATP = dCTP + ADP 4 NDPK8 nucleoside-diphosphate kinase ( ATP:dADP ) [c] : atp + dadp <==> adp + datp ( B2518 OR B0474 ) ( DADPKIN-RXN ) DADPKIN-RXN :gene-match dADP + ATP = dATP + ADP 4 NH4tex ammonia transport via diffusion ( extracellular to periplasm ) nh4[e] <==> nh4[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da nh4 0 NH4tpp ammonia reversible transport ( periplasm ) nh4[p] <==> nh4[c] B0451 ( TRANS-RXN-149 ) ( ( LEFT SUBSTITUTE AMMONIA AMMONIUM ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) TRANS-RXN-149 :gene-match ammonia[periplasmic space] =ammonia[cytosol] AMMONIA nh4 0 NHFRBO NADH:flavorubredoxin oxidoreductase [c] : h + nadh + ( 2 ) no --> h2o + n2o + nad ( B2710 AND B2711 ) RXN0-2721 :gene-match NADH + oxidized flavorubredoxin + 2 nitric oxide = NAD+ + reduced flavorubredoxin + nitrous oxide + H2O CPLX0-2, CPLX0-1 h 5 NI2t3pp nickle ( Ni+2 ) transport out via proton antiport ( periplasm ) h[p] + ni2[c] --> h[c] + ni2[p] ( B3915 OR B0752 ) ( TRANS-RXN-141B ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 ni2 1 NI2tex nickel transport via diffusion ( extracellular to periplasm ) ni2[e] <==> ni2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ni2 0 NI2tpp nickel ( +2 ) transport in via permease ( no H+ ) ni2[p] --> ni2[c] B3816 ( TRANS-RXN-141B ) TRANS-RXN-141B :gene-match Ni2+[periplasmic space] =Ni2+[cytosol] 1 NI2uabcpp "nickel transport via ABC system ( uptake, periplasm )" atp[c] + h2o[c] + ni2[p] --> adp[c] + h[c] + ni2[c] + pi[c] ( ( B3476 AND B3477 AND B3478 AND B3479 AND B3480 ) OR B4242 ) ( ABC-20-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-20-RXN :gene-match Ni2+[periplasmic space] + ATP + H2O =Ni2+[cytosol] + ADP + phosphate h 5 NMNAT nicotinamide-nucleotide adenylyltransferase [c] : atp + h + nmn --> nad + ppi ( B0639 OR B4390 ) ( 2.7.7.1-RXN ) ( ( LEFT REMOVE PROTON ) ) 2.7.7.1-RXN :gene-match nicotinamide mononucleotide + ATP = NAD+ + diphosphate h 4 NMNPtpp NMN permease ( periplasm ) nmn[p] --> nmn[c] B0751 ( TRANS-RXN-9 ) TRANS-RXN-9 :gene-match nicotinamide mononucleotide[periplasmic space] =nicotinamide mononucleotide[cytosol] 1 NMNtex NMN transport via diffusion ( extracellular to periplasm ) nmn[e] <==> nmn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da nmn 0 NNAM nicotinamidase [c] : h2o + ncam --> nac + nh4 B1768 ( NICOTINAMID-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) NICOTINAMID-RXN :gene-match nicotinamide + H2O = nicotinate + ammonia AMMONIA nh4 3 NNATr nicotinate-nucleotide adenylyltransferase [c] : atp + h + nicrnt <==> dnad + ppi B0639 ( NICONUCADENYLYLTRAN-RXN ) ( ( LEFT REMOVE PROTON ) ) NICONUCADENYLYLTRAN-RXN :gene-match ATP + nicotinate nucleotide = diphosphate + deamido-NAD h 4 NNDMBRT Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase [c] : dmbzid + nicrnt --> 5prdmbz + h + nac B1991 ( DMBPPRIBOSYLTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) DMBPPRIBOSYLTRANS-RXN :gene-match nicotinate nucleotide + dimethylbenzimidazole = nicotinate + alpha-ribazole-5'-P h 4 NNDPR nicotinate-nucleotide diphosphorylase ( carboxylating ) [c] : ( 2 ) h + prpp + quln --> co2 + nicrnt + ppi B0109 ( QUINOPRIBOTRANS-RXN ) ( ( LEFT REMOVE PROTON ) ) QUINOPRIBOTRANS-RXN :gene-match CO2 + diphosphate + nicotinate nucleotide = 5-phosphoribosyl 1-pyrophosphate + quinolinate h 5 NO2t2rpp "nitrite transport in via proton symport, reversible ( periplasm )" h[p] + no2[p] <==> h[c] + no2[c] ( B3367 OR B1223 ) ( TRANS-RXN-137 ) TRANS-RXN-26 :gene-match H+[periplasmic space] + nitrite[cytosol] =H+[cytosol] + nitrite[periplasmic space] 2 NO2tex nitrite transport via diffusion ( extracellular to periplasm ) no2[e] <==> no2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da no2 0 NO3R1bpp Nitrate reductase ( Ubiquinol-8 ) no3[p] + q8h2[c] --> h2o[p] + no2[p] + q8[c] ( ( B2203 AND B2206 ) AND B2202 AND B2205 AND B2204 ) RXN0-2081 :gene-match ubiquinol-10 + NO3- = ubiquinone-10 + nitrite + H2O UBIQUINONE-10, UBIQUINOL-10 q8, q8h2 3 NO3R1pp Nitrate reductase ( Ubiquinol-8 ) ( periplasm ) ( 2 ) h[c] + no3[c] + q8h2[c] --> ( 2 ) h[p] + h2o[c] + no2[c] + q8[c] ( ( B1465 AND B1466 AND B1467 AND B1468 ) OR ( B1224 AND B1225 AND B1226 AND B1227 ) ) RXN0-3501 :gene-match menaquinol + NO3- -> menaquinone-8 + nitrite + H2O mqn8, mql8 h, q8h2, q8 3 NO3R2bpp Nitrate reductase ( Menaquinol-8 ) ( periplasm ) mql8[c] + no3[p] --> h2o[p] + mqn8[c] + no2[p] ( ( B2203 AND B2206 ) AND B2202 ) RXN0-3501 :gene-match menaquinol + NO3- -> menaquinone-8 + nitrite + H2O 5 NO3R2pp Nitrate reductase ( Menaquinol-8 ) ( periplasm ) ( 2 ) h[c] + mql8[c] + no3[c] --> ( 2 ) h[p] + h2o[c] + mqn8[c] + no2[c] ( ( B1465 AND B1466 AND B1467 AND B1468 ) OR ( B1224 AND B1225 AND B1226 AND B1227 ) ) ( RXN0-3501 ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) RXN0-3501 :gene-match menaquinol + NO3- -> menaquinone-8 + nitrite + H2O h 5 NO3t7pp nitrate transport in via nitrite antiport ( periplasm ) no2[c] + no3[p] --> no2[p] + no3[c] ( B1223 OR B1469 ) TRANS-RXN-26 :gene-match H+[periplasmic space] + nitrite[cytosol] =H+[cytosol] + nitrite[periplasmic space] h no3 1 NO3tex nitrate transport via diffusion ( extracellular to periplasm ) no3[e] <==> no3[p] ( B0241 OR B0929 OR B2215 OR B1377 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da no3 0 NODOx nitric oxide dioxygenase [c] : nadh + ( 2 ) no + ( 2 ) o2 --> h + nad + ( 2 ) no3 B2552 ( R621-RXN ) ( :EXPANDED-RXN-MATCH ) R621-RXN :gene-match 2 nitric oxide + 2 O2 + NAD(P)H = 2 NO3- + NAD(P)+ + H+ NAD(P), NAD(P)H nadh, nad 4 NODOy nitric oxide dioxygenase [c] : nadph + ( 2 ) no + ( 2 ) o2 --> h + nadp + ( 2 ) no3 B2552 ( R621-RXN ) ( :EXPANDED-RXN-MATCH ) R621-RXN :gene-match 2 nitric oxide + 2 O2 + NAD(P)H = 2 NO3- + NAD(P)+ + H+ NAD(P), NAD(P)H nadph, nadp 4 NOtex nitric oxide transport via diffusion ( extracellular to periplasm ) no[e] <==> no[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da no 0 NPHS naphthoate synthase [c] : sbzcoa --> coa + dhna B2262 ( NAPHTHOATE-SYN-RXN ) NAPHTHOATE-SYN-RXN :gene-match O-succinylbenzoyl-CoA = coenzyme A + 1,4-dihydroxy-2-naphthoate 3 NTD1 5'-nucleotidase ( dUMP ) [c] : dump + h2o --> duri + pi ( B2291 OR B2744 OR B4374 ) ( NUCLEOTIDASE-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides dump, duri 2 NTD10 5'-nucleotidase ( XMP ) [c] : h2o + xmp --> pi + xtsn B2744 ( XMPXAN-RXN ) ( :METACYC ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides xmp, xtsn 2 NTD10pp 5'-nucleotidase ( XMP ) [p] : h2o + xmp --> pi + xtsn ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters xmp, xtsn 2 NTD11 5'-nucleotidase ( IMP ) [c] : h2o + imp --> ins + pi B2744 ( RXN-7607 ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides imp, ins 2 NTD11pp 5'-nucleotidase ( IMP ) [p] : h2o + imp --> ins + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters imp, ins 2 NTD12 5'-nucleotidase ( dIMP ) [c] : dimp + h2o --> din + pi ( B2291 OR B2744 ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides dimp, din 2 NTD12pp 5'-nucleotidase ( dIMP ) ( periplasm ) [p] : dimp + h2o --> din + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dimp, din 2 NTD1pp 5'-nucleotidase ( dUMP ) [p] : dump + h2o --> duri + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dump, duri 2 NTD2 5'-nucleotidase ( UMP ) [c] : h2o + ump --> pi + uri ( B2744 OR B4374 ) ( |5'-NUCLEOTID-RXN| ) ( :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides ump, uri 2 NTD2pp 5'-nucleotidase ( UMP ) [p] : h2o + ump --> pi + uri ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters ump, uri 2 NTD3 5'-nucleotidase ( dCMP ) [c] : dcmp + h2o --> dcyt + pi ( B2291 OR B2744 ) ( NUCLEOTIDASE-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides dcmp, dcyt 2 NTD3pp 5'-nucleotidase ( dCMP ) [p] : dcmp + h2o --> dcyt + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dcmp, dcyt 2 NTD4 5'-nucleotidase ( CMP ) [c] : cmp + h2o --> cytd + pi B2744 ( |5'-NUCLEOTID-RXN| ) ( :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides cytd, cmp 2 NTD4pp 5'-nucleotidase ( CMP ) [p] : cmp + h2o --> cytd + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters cytd, cmp 2 NTD5 5'-nucleotidase ( dTMP ) [c] : dtmp + h2o --> pi + thymd ( B2291 OR B2744 OR B4374 ) ( |THYMIDYLATE-5'-PHOSPHATASE-RXN| ) ( :METACYC ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides dtmp, thymd 2 NTD5pp 5'-nucleotidase ( dTMP ) [p] : dtmp + h2o --> pi + thymd ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dtmp, thymd 2 NTD6 5'-nucleotidase ( dAMP ) [c] : damp + h2o --> dad-2 + pi ( B2291 OR B2744 ) ( NUCLEOTIDASE-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides damp, dad-2 2 NTD6pp 5'-nucleotidase ( dAMP ) [p] : damp + h2o --> dad-2 + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters damp, dad-2 2 NTD7 5'-nucleotidase ( AMP ) [c] : amp + h2o --> adn + pi B2744 ( |5'-NUCLEOTID-RXN| ) ( :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides adn, amp 2 NTD7pp 5'-nucleotidase ( AMP ) [p] : amp + h2o --> adn + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters adn, amp 2 NTD8 5'-nucleotidase ( dGMP ) [c] : dgmp + h2o --> dgsn + pi ( B2291 OR B2744 ) ( NUCLEOTIDASE-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides dgmp, dgsn 2 NTD8pp 5'-nucleotidase ( dGMP ) [p] : dgmp + h2o --> dgsn + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dgmp, dgsn 2 NTD9 5'-nucleotidase ( GMP ) [c] : gmp + h2o --> gsn + pi B2744 ( RXN-7609 ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides gmp, gsn 2 NTD9pp 5'-nucleotidase ( GMP ) [p] : gmp + h2o --> gsn + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters gmp, gsn 2 NTP1 nucleoside-triphosphatase ( ATP ) [c] : atp + h2o --> adp + h + pi ( B0650 OR B4161 ) ( RXN0-1061 3.6.3.1-RXN 3.6.3.15-RXN 3.6.3.46-RXN 3.6.3.49-RXN 3.6.3.50-RXN 3.6.3.51-RXN 3.6.3.52-RXN 3.6.4.1-RXN 3.6.4.2-RXN 3.6.4.3-RXN 3.6.4.4-RXN 3.6.4.5-RXN 3.6.4.6-RXN 3.6.4.7-RXN 3.6.4.8-RXN 3.6.4.9-RXN 3.6.4.11-RXN ADENOSINETRIPHOSPHATASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) RXN0-1021 :gene-match GTP + H2O = GDP + phosphate gtp, gdp h, atp, adp 2 NTP10 nucleoside-triphosphatase ( ITP ) [c] : h2o + itp --> h + idp + pi ( B4161 OR B4394 ) ( RXN0-5073 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5073 :gene-match ITP + H2O -> IDP + phosphate h 4 NTP11 nucleoside-triphosphatase ( dITP ) [c] : ditp + h2o --> didp + h + pi B4394 RXN0-5073 :gene-match ITP + H2O -> IDP + phosphate itp, idp h, ditp, didp 2 NTP12 nucleoside-triphosphatase ( XTP ) [c] : h2o + xtp --> h + pi + xdp B4394 ( RXN0-5074 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5074 :gene-match XTP + H2O -> XDP + phosphate h 4 NTP3 nucleoside-triphosphatase ( GTP ) [c] : gtp + h2o --> gdp + h + pi B4161 ( RXN0-1021 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-1021 :gene-match GTP + H2O = GDP + phosphate h 4 NTP3pp nucleoside-triphosphatase ( GTP ) ( periplasm ) [p] : gtp + h2o --> gdp + h + pi B0980 RXN0-1021 :gene-match GTP + H2O = GDP + phosphate h 4 NTP5 nucleoside-triphosphatase ( CTP ) [c] : ctp + h2o --> cdp + h + pi B4161 RXN0-1021 :gene-match GTP + H2O = GDP + phosphate gtp, gdp ctp, cdp, h 2 NTPP1 Nucleoside triphosphate pyrophosphorylase ( dgtp ) [c] : dgtp + h2o --> dgmp + h + ppi ( B2781 OR B0099 ) ( RXN0-385 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-385 :gene-match dGTP + H2O = dGMP + diphosphate h 4 NTPP10 Nucleoside triphosphate pyrophosphorylase ( ditp ) [c] : ditp + h2o --> dimp + h + ppi B2954 ( RXN0-1602 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-1602 :gene-match dITP + H2O -> dIMP + diphosphate h 4 NTPP11 Nucleoside triphosphate pyrophosphorylase ( xtp ) [c] : h2o + xtp --> h + ppi + xmp B2954 ( RXN0-1603 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-1603 :gene-match XTP + H2O -> xanthosine-5-phosphate + diphosphate h 4 NTPP2 Nucleoside triphosphate pyrophosphorylase ( gtp ) [c] : gtp + h2o --> gmp + h + ppi ( B0099 OR B2781 ) RXN0-1041 :gene-match a nucleoside triphosphate + H2O -> a nucleoside monophosphate + diphosphate Nucleoside-Monophosphates, Nucleoside-Triphosphates gtp, h, gmp 2 NTPP3 Nucleoside triphosphate pyrophosphorylase ( dctp ) [c] : dctp + h2o --> dcmp + h + ppi ( B2781 OR B1759 OR B2251 ) ( DCTP-PYROPHOSPHATASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) DCTP-PYROPHOSPHATASE-RXN :gene-match dCTP + H2O -> dCMP + diphosphate h 4 NTPP4 Nucleoside triphosphate pyrophosphorylase ( ctp ) [c] : ctp + h2o --> cmp + h + ppi ( B2781 OR B1759 ) ( RXN0-383 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-383 :gene-match CTP + H2O = CMP + diphosphate h 4 NTPP5 Nucleoside triphosphate pyrophosphorylase ( datp ) [c] : datp + h2o --> damp + h + ppi ( B2781 OR B1865 ) ( RXN0-384 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-384 :gene-match dATP + H2O = dAMP + diphosphate h 4 NTPP6 Nucleoside triphosphate pyrophosphorylase ( atp ) [c] : atp + h2o --> amp + h + ppi B2781 ( ATP-PYROPHOSPHATASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) RXN0-1041 :gene-match a nucleoside triphosphate + H2O -> a nucleoside monophosphate + diphosphate Nucleoside-Monophosphates, Nucleoside-Triphosphates amp, atp, h 2 NTPP7 Nucleoside triphosphate pyrophosphorylase ( dttp ) [c] : dttp + h2o --> dtmp + h + ppi ( B2781 OR B2251 ) ( RXN0-5107 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5107 :gene-match dTTP + H2O -> dTMP + diphosphate h 4 NTPP8 Nucleoside triphosphate pyrophosphorylase ( utp ) [c] : h2o + utp --> h + ppi + ump B2781 RXN0-1041 :gene-match a nucleoside triphosphate + H2O -> a nucleoside monophosphate + diphosphate Nucleoside-Monophosphates, Nucleoside-Triphosphates h, utp, ump 2 NTPP9 Nucleoside triphosphate pyrophosphorylase ( itp ) [c] : h2o + itp --> h + imp + ppi B2954 RXN0-1602 :gene-match dITP + H2O -> dIMP + diphosphate dimp, ditp h, itp, imp 2 NTPTP1 Nucleoside triphosphate tripolyhydrolase [c] : dgtp + h2o --> dgsn + pppi B0160 ( DGTPTRIPHYDRO-RXN ) DGTPTRIPHYDRO-RXN :gene-match H2O + dGTP -> PPPi + deoxyguanosine 4 NTPTP2 Nucleoside triphosphate tripolyhydrolase [c] : gtp + h2o --> gsn + pppi B0160 DGTPTRIPHYDRO-RXN :gene-match H2O + dGTP -> PPPi + deoxyguanosine dgtp, dgsn gtp, gsn 2 NTRIR2x nitrite Reductase ( NADH ) [c] : ( 5 ) h + ( 3 ) nadh + no2 --> ( 2 ) h2o + ( 3 ) nad + nh4 ( B3365 AND B3366 ) NITRITREDUCT-RXN :gene-match 3 NAD(P)+ + NH(4)OH + H2O -> 3 NAD(P)H + nitrite NAD(P), NAD(P)H, NH4OH h, nadh, nad, nh4 2 NTRIR3pp "nitrite Reductase ( Ubiquinole-8, periplasm )" ( 2 ) h[p] + no2[p] + ( 3 ) q8h2[c] --> ( 2 ) h2o[p] + nh4[p] + ( 3 ) q8[c] ( B4070 AND B4071 AND B4072 AND B4073 ) 1.7.7.2-RXN :gene-match ammonia + 6 oxidized cytochrome c552 + 2 H2O -> nitrite + 6 reduced cytochrome c552 + 7 H+ Cytochromes-C552-Red, AMMONIA, Cytochromes-C552-Ox nh4, q8h2, q8 3 NTRIR4pp "nitrite Reductase ( Menaquinole-8, periplasm )" ( 2 ) h[p] + ( 3 ) mql8[c] + no2[p] --> ( 2 ) h2o[p] + ( 3 ) mqn8[c] + nh4[p] ( B4070 AND B4071 AND B4072 AND B4073 ) 1.7.7.2-RXN :gene-match ammonia + 6 oxidized cytochrome c552 + 2 H2O -> nitrite + 6 reduced cytochrome c552 + 7 H+ Cytochromes-C552-Red, AMMONIA, Cytochromes-C552-Ox mqn8, nh4, mql8 3 O16AUNDtpp "O16 antigen ( flippase, cytoplasm to periplasm )" o16aund[c] --> o16aund[p] B2037 ( :UNMAPPED-CPDS ) TRANS-RXN-146 :gene-match a lipopolysaccharide[cytosol] =a lipopolysaccharide[periplasmic space] Lipopolysaccharides o16aund 0 O2Stex superoxide anion transport via diffusion ( extracellular to periplasm ) o2s[e] <==> o2s[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da o2s 0 O2tex oxygen transport via diffusion ( extracellular to periplasm ) o2[e] <==> o2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da o2 0 OAADC oxaloacetate decarboxylase [c] : h + oaa --> co2 + pyr B1850 ( OXALODECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) OXALODECARB-RXN :gene-match oxaloacetate = pyruvate + CO2 h 3 OBTFL 2-Oxobutanoate formate lyase [c] : 2obut + coa --> for + ppcoa ( ( ( B0902 AND B0903 ) AND B2579 ) OR ( B0902 AND B0903 ) OR ( B0902 AND B3114 ) ) ( KETOBUTFORMLY-RXN ) KETOBUTFORMLY-RXN :gene-match 2-oxobutanoate + coenzyme A = propionyl-CoA + formate 4 OCBT ornithine carbamoyltransferase [c] : cbp + orn <==> citr-L + h + pi ( B4254 OR B0273 ) ( ORNCARBAMTRANSFER-RXN ) ( ( RIGHT REMOVE PROTON ) ) ORNCARBAMTRANSFER-RXN :gene-match L-ornithine + carbamoyl-phosphate = citrulline + phosphate h 4 OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion ( extracellular to periplasm ) ocdca[e] --> ocdca[p] B2344 ( RXN0-1802 ) ( :EXPANDED-RXN-MATCH ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid ocdca 0 OCDCEAtexi Octadecenoate ( n-C18:1 ) transport via facilitated irreversible diffusion ( extracellular to periplasm ) ocdcea[e] --> ocdcea[p] B2344 ( RXN0-1802 ) ( :EXPANDED-RXN-MATCH ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid ocdcea 0 OCTAtex Octanoate transport via diffusion ( extracellular to periplasm ) octa[e] <==> octa[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da octa 0 OCTDPS Octaprenyl pyrophosphate synthase [c] : frdp + ( 5 ) ipdp --> octdp + ( 5 ) ppi B3187 ( OPPSYN-RXN ) ( :EXPANDED-RXN-MATCH ) OPPSYN-RXN :gene-match a trans-polyisoprenyln-PP + delta3-isopentenyl-PP = trans-polyisoprenyln+1-PP + diphosphate TRANS-POLYISOPRENYL-PP frdp, octdp 2 ODECOAI Octadecenoyl-coa cis-trans isomerization [c] : odecoa --> od2coa B3846 ENOYL-COA-DELTA-ISOM-RXN :gene-match a cis-3-enoyl-CoA = a trans-2-enoyl-CoA CIS-DELTA3-ENOYL-COA, td2coa od2coa, odecoa 0 OHPBAT O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase [c] : glu-L + ohpb <==> akg + phthr B0907 ( PSERTRANSAMPYR-RXN ) PSERTRANSAMPYR-RXN :gene-match 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate + L-glutamate = phospho-hydroxy-threonine + alpha-ketoglutarate PHOSPHO-HYDROXY-THREONINE phthr 3 OHPHM 2-octaprenyl-6-hydroxyphenol methylase [c] : 2ohph + amet --> 2omph + ahcys + h B2232 ( 2-OCTAPRENYL-6-OHPHENOL-METHY-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2-OCTAPRENYL-6-OHPHENOL-METHY-RXN :gene-match 2-octaprenyl-6-hydroxyphenol + S-adenosyl-L-methionine = 2-octaprenyl-6-methoxyphenol + S-adenosyl-L-homocysteine h 4 OMBZLM 2-Octaprenyl-6-methoxy-benzoquinol methylase [c] : 2ombzl + amet --> 2ommbl + ahcys + h B3833 ( 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN ) ( ( RIGHT REMOVE PROTON ) ) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN :gene-match 2-octaprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine h 4 OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation [c] : 3c4mop + h --> 4mop + co2 B0073 ( RXN-7800 ) ( ( LEFT REMOVE PROTON ) ) 3-ISOPROPYLMALDEHYDROG-RXN :gene-match 3-isopropylmalate + NAD+ = 2-isopropyl-3-oxosuccinate + NADH + H+ nadh, 3c2hmp, nad 4mop, co2 2 OMMBLHX "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" [c] : 2ommbl + ( 0.5 ) o2 --> 2omhmbl B0662 OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN :gene-match 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + O2 = 3-demethylubiquinone-8 + H2O h2o 3 OMPDC orotidine-5'-phosphate decarboxylase [c] : h + orot5p --> co2 + ump B1281 ( OROTPDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) OROTPDECARB-RXN :gene-match orotidine-5'-phosphate = CO2 + UMP h 3 OMPHHX 2-octaprenyl-6-methoxyphenol hydroxylase [c] : 2omph + ( 0.5 ) o2 --> 2ombzl B2907 2-OCTAPRENYL-6-METHOXYPHENOL-HYDROX-RXN :gene-match 2-octaprenyl-6-methoxyphenol + O2 = H2O + 2-octaprenyl-6-methoxy-1,4-benzoquinone h2o 3 OP4ENH 2-oxopent-4-enoate hydratase [c] : h2o + op4en --> 4h2opntn B0350 ( 2-OXOPENT-4-ENOATE-HYDRATASE-RXN ) 2-OXOPENT-4-ENOATE-HYDRATASE-RXN :gene-match 2-oxopent-4-enoate + H2O = 4-hydroxy-2-ketovalerate 3 OPHBDC Octaprenyl-hydroxybenzoate decarboxylase [c] : 3ophb + h --> 2oph + co2 ( B3843 OR B2311 ) ( 3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) 3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN :gene-match 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 h 3 OPHHX 2-Octaprenylphenol hydroxylase [c] : 2oph + ( 0.5 ) o2 --> 2ohph B3835 ( 2-OCTAPRENYLPHENOL-HYDROX-RXN ) 2-OCTAPRENYLPHENOL-HYDROX-RXN :gene-match 2 2-octaprenylphenol + O2 = 2 2-octaprenyl-6-hydroxyphenol 3 ORNabcpp ornithine transport via ABC system ( periplasm ) atp[c] + h2o[c] + orn[p] --> adp[c] + h[c] + orn[c] + pi[c] ( B2310 AND B2307 AND B2306 AND B2308 ) ( ABC-37-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-37-RXN :gene-match ATP + L-ornithine[periplasmic space] + H2O =ADP + phosphate + L-ornithine[cytosol] h 5 ORNDC Ornithine Decarboxylase [c] : h + orn --> co2 + ptrc ( B2965 OR B0693 ) ( ORNDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) ORNDECARBOX-RXN :gene-match L-ornithine = CO2 + putrescine h 3 ORNtex ornithine transport via diffusion ( extracellular to periplasm ) orn[e] <==> orn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da orn 0 OROTt2_2pp Orotate transport via proton symport ( 2 H ) ( periplasm ) ( 2 ) h[p] + orot[p] --> ( 2 ) h[c] + orot[c] B3528 ( TRANS-RXN-121C ) TRANS-RXN-121C :gene-match Na+[periplasmic space] + orotate[periplasmic space] =Na+[cytosol] + orotate[cytosol] na1 h 1 OROTtex Orotate transport via diffusion ( extracellular to periplasm ) orot[e] <==> orot[p] ( B1377 OR B0929 OR B0241 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da orot 0 ORPT orotate phosphoribosyltransferase [c] : orot5p + ppi <==> orot + prpp B3642 ( OROPRIBTRANS-RXN ) OROPRIBTRANS-RXN :gene-match orotidine-5'-phosphate + diphosphate = 5-phosphoribosyl 1-pyrophosphate + orotate 4 OXGDC2 2-oxoglutarate decarboxylase [c] : akg + h + thmpp --> co2 + ssaltpp B2264 ( 2-OXOGLUT-DECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) 2-OXOGLUT-DECARBOX-RXN :gene-match alpha-ketoglutarate + thiamine diphosphate = CO2 + succinate-semialdehyde-thiamine PPi h 4 P5CD 1-pyrroline-5-carboxylate dehydrogenase [c] : 1pyr5c + ( 2 ) h2o + nad --> glu-L + h + nadh B1014 ( PYRROLINECARBDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) PYRROLINECARBDEHYDROG-RXN :gene-match pyrroline 5-carboxylate + NAD+ + 2 H2O = L-glutamate + NADH h 5 P5CR pyrroline-5-carboxylate reductase [c] : 1pyr5c + ( 2 ) h + nadph --> nadp + pro-L B0386 ( PYRROLINECARBREDUCT-RXN ) ( :EXPANDED-RXN-MATCH ) PYRROLINECARBREDUCT-RXN :gene-match L-proline + NAD(P)+ = pyrroline 5-carboxylate + NAD(P)H + H+ NAD(P), NAD(P)H nadph, nadp 3 PA120abcpp "phosphatidate transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pa120[c] --> adp[c] + h[c] + pa120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pa120, h 4 PA140abcpp "phosphatidate transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pa140[c] --> adp[c] + h[c] + pa140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa140 4 PA141abcpp "phosphatidate transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pa141[c] --> adp[c] + h[c] + pa141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa141 4 PA160abcpp "phosphatidate transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pa160[c] --> adp[c] + h[c] + pa160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa160 4 PA161abcpp "phosphatidate transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pa161[c] --> adp[c] + h[c] + pa161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa161 4 PA180abcpp "phosphatidate transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pa180[c] --> adp[c] + h[c] + pa180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa180 4 PA181abcpp "phosphatidate transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pa181[c] --> adp[c] + h[c] + pa181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa181 4 PACALDtex phenethylacetaldehyde transport via diffusion ( extracellular to periplasm ) pacald[e] <==> pacald[p] ( B2215 OR B0241 OR B0929 OR B1377 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pacald 0 PACCOAL phenylacetate-CoA ligase [c] : atp + coa + pac --> amp + phaccoa + ppi B1398 ( PHENYLACETATE--COA-LIGASE-RXN ) PHENYLACETATE--COA-LIGASE-RXN :gene-match phenylacetate + coenzyme A + ATP = phenylacetyl-CoA + AMP + diphosphate 6 PANTS pantothenate synthase [c] : ala-B + atp + pant-R --> amp + h + pnto-R + ppi B0133 ( PANTOATE-BETA-ALANINE-LIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) PANTOATE-BETA-ALANINE-LIG-RXN :gene-match beta-alanine + L-pantoate + ATP = pantothenate + diphosphate + AMP h 6 PAPA120 Phosphatidate phosphatase ( n-C12:0 ) [c] : h2o + pa120 --> 12dgr120 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pa120, 12dgr120 2 PAPA120pp "Phosphatidate phosphatase ( periplasmic, n-C12:0 )" [p] : h2o + pa120 --> 12dgr120 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pa120, 12dgr120 2 PAPA140 Phosphatidate phosphatase ( n-C14:0 ) [c] : h2o + pa140 --> 12dgr140 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr140, pa140 2 PAPA140pp "Phosphatidate phosphatase ( periplasmic, n-C14:0 )" [p] : h2o + pa140 --> 12dgr140 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr140, pa140 2 PAPA141 Phosphatidate phosphatase ( n-C14:1 ) [c] : h2o + pa141 --> 12dgr141 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr141, pa141 2 PAPA141pp "Phosphatidate phosphatase ( periplasmic, n-C14:1 )" [p] : h2o + pa141 --> 12dgr141 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr141, pa141 2 PAPA160 Phosphatidate phosphatase ( n-C16:0 ) [c] : h2o + pa160 --> 12dgr160 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr160, pa160 2 PAPA160pp "Phosphatidate phosphatase ( periplasmic, n-C16:0 )" [p] : h2o + pa160 --> 12dgr160 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr160, pa160 2 PAPA161 Phosphatidate phosphatase ( n-C16:1 ) [c] : h2o + pa161 --> 12dgr161 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr161, pa161 2 PAPA161pp "Phosphatidate phosphatase ( periplasmic, n-C16:1 )" [p] : h2o + pa161 --> 12dgr161 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr161, pa161 2 PAPA180 Phosphatidate phosphatase ( n-C18:0 ) [c] : h2o + pa180 --> 12dgr180 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr180, pa180 2 PAPA180pp "Phosphatidate phosphatase ( periplasmic, n-C18:0 )" [p] : h2o + pa180 --> 12dgr180 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr180, pa180 2 PAPA181 Phosphatidate phosphatase ( n-C18:1 ) [c] : h2o + pa181 --> 12dgr181 + pi B1278 ( PHOSPHATIDATE-PHOSPHATASE-RXN ) ( :METACYC ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr181, pa181 2 PAPA181pp "Phosphatidate phosphatase ( periplasmic, n-C18:1 )" [p] : h2o + pa181 --> 12dgr181 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr181, pa181 2 PAPPT3 "phospho-N-acetylmuramoyl-pentapeptide-transferase ( meso-2,6-diaminopimelate )" [c] : udcpp + ugmda --> uagmda + ump B0087 ( PHOSNACMURPENTATRANS-RXN ) ( :EXPANDED-RXN-MATCH ) PHOSNACMURPENTATRANS-RXN :gene-match UDP-N-acetylmuramoyl-pentapeptide + undecaprenyl phosphate = N-acetylmuramoyl-pentapeptide-diphosphoundecaprenol + UMP UDP-NAcMur-Peptides, NAcMur-Peptide-Undecaprenols uagmda, ugmda 2 PAPSR phosphoadenylyl-sulfate reductase ( thioredoxin ) [c] : paps + trdrd --> ( 2 ) h + pap + so3 + trdox ( ( B2762 AND B2582 ) OR ( B2762 AND B3781 ) ) ( 1.8.4.8-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) PAPSREDGLUT-RXN :gene-match a reduced glutaredoxin 1 + 3'-phosphoadenylyl-sulfate = an oxidized glutaredoxin 1 + H+ + sulfite + adenosine-3',5'-bisphosphate GLUTAREDOXIN-1-OXIDIZED, grxrd trdrd, trdox 4 PAPSR2 phosphoadenylyl-sulfate reductase ( glutaredoxin ) [c] : grxrd + paps --> grxox + ( 2 ) h + pap + so3 ( ( B2762 AND B0849 ) OR ( B2762 AND B1064 ) OR ( B2762 AND B1654 ) OR ( B2762 AND B3610 ) ) PAPSREDGLUT-RXN :gene-match a reduced glutaredoxin 1 + 3'-phosphoadenylyl-sulfate = an oxidized glutaredoxin 1 + H+ + sulfite + adenosine-3',5'-bisphosphate GLUTAREDOXIN-1-OXIDIZED grxox 5 PDE1 "3',5'-cyclic-nucleotide phosphodiesterase" [c] : camp + h2o --> amp + h B1489 ( RXN0-5038 ) ( ( RIGHT REMOVE PROTON ) ) 3.1.4.17-RXN :gene-match H2O + a nucleoside 3',5'-cyclic phosphate -> a nucleoside-5'-phosphate Cyclic-3-5-Ribonucleoside-Monophosphates, NUC-5-PHOSPHATE amp, camp, h 1 PDH pyruvate dehydrogenase [c] : coa + nad + pyr --> accoa + co2 + nadh ( B0114 AND B0115 AND B0116 ) ( PYRUVDEH-RXN ) PYRUVDEH-RXN :gene-match pyruvate + coenzyme A + NAD+ -> acetyl-CoA + CO2 + NADH 6 PDX5POi pyridoxine 5'-phosphate oxidase [c] : o2 + pdx5p --> h2o2 + pydx5p B1638 ( PNPOXI-RXN ) PNPOXI-RXN :gene-match O2 + pyridoxine-5'-phosphate = H2O2 + pyridoxal 5'-phosphate 4 PDX5PS Pyridoxine 5'-phosphate synthase [c] : dxyl5p + nad + phthr --> co2 + h + ( 2 ) h2o + nadh + pdx5p + pi ( B0052 AND B2564 ) PDXJ-RXN :gene-match 1-amino-propan-2-one-3-phosphate + 1-deoxy-D-xylulose 5-phosphate = pyridoxine-5'-phosphate + phosphate + 2 H2O 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE h, nadh, phthr, co2, nad 4 PE120abcpp "phosphatidylethanolamine transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pe120[c] --> adp[c] + h[c] + pe120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe120 4 PE140abcpp "phosphatidylethanolamine transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pe140[c] --> adp[c] + h[c] + pe140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe140 4 PE141abcpp "phosphatidylethanolamine transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pe141[c] --> adp[c] + h[c] + pe141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe141 4 PE160abcpp "phosphatidylethanolamine transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pe160[c] --> adp[c] + h[c] + pe160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pe160, h 4 PE161abcpp "phosphatidylethanolamine transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pe161[c] --> adp[c] + h[c] + pe161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pe161, h 4 PE180abcpp "phosphatidylethanolamine transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pe180[c] --> adp[c] + h[c] + pe180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe180 4 PE181abcpp "phosphatidylethanolamine transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pe181[c] --> adp[c] + h[c] + pe181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe181 4 PEAMNOpp Phenethylamine oxidase [p] : h2o + o2 + peamn --> h2o2 + nh4 + pacald B1386 AMINEPHEN-RXN :gene-match H2O + O2 + phenylethylamine = H2O2 + ammonia + phenylacetaldehyde AMMONIA nh4 5 PEAMNtex phenethylamine transport via diffusion ( extracellular to periplasm ) peamn[e] <==> peamn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da peamn 0 PERD Erythronate 4-phosphate ( 4per ) dehydrogenase [c] : 4per + nad <==> h + nadh + ohpb B2320 ( ERYTHRON4PDEHYDROG-RXN ) ERYTHRON4PDEHYDROG-RXN :gene-match erythronate-4-phosphate + NAD+ = 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate + NADH h 4 PETNT161pp phosphoethanolamine transferase ( c-C16:1 ) [p] : lipa + pe161 --> 12dgr161 + enlipa B3546 RXN0-4581 :gene-match KDO2-lipid IVA + a phosphatidylethenolamine = a 1,2-diacylglycerol + phosphatidylethanolamine-KDO2-lipidA kdo2lipid4, PHOSPHATIDYLETHANOLAMINE, 12dgr181 lipa, pe161, 12dgr161 1 PETNT181pp phosphoethanolamine transferase ( c-C16:1 ) [p] : lipa + pe181 --> 12dgr181 + enlipa B3546 RXN0-4581 :gene-match KDO2-lipid IVA + a phosphatidylethenolamine = a 1,2-diacylglycerol + phosphatidylethanolamine-KDO2-lipidA PHOSPHATIDYLETHANOLAMINE, kdo2lipid4 lipa, pe181 2 PFK phosphofructokinase [c] : atp + f6p --> adp + fdp + h ( B3916 OR B1723 ) ( 6PFRUCTPHOS-RXN ) ( ( RIGHT REMOVE PROTON ) ) 6PFRUCTPHOS-RXN :gene-match D-fructose-6-phosphate + ATP = ADP + fructose-1,6-bisphosphate h 4 PFK_2 Phosphofructokinase [c] : atp + tag6p-D --> adp + h + tagdp-D B3916 ( TAGAKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) NAD-KIN-RXN :gene-match NAD+ + ATP = NADP+ + ADP nadp, nad tagdp-D, h, tag6p-D 2 PFL pyruvate formate lyase [c] : coa + pyr --> accoa + for ( ( ( B0902 AND B0903 ) AND B2579 ) OR ( B0902 AND B0903 ) OR ( B0902 AND B3114 ) OR ( B3951 AND B3952 ) ) ( PYRUVFORMLY-RXN ) PYRUVFORMLY-RXN :gene-match formate + acetyl-CoA = pyruvate + coenzyme A 4 PG120abcpp "phosphatidylglycerol transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pg120[c] --> adp[c] + h[c] + pg120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg120 4 PG140abcpp "phosphatidylglycerol transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pg140[c] --> adp[c] + h[c] + pg140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg140 4 PG141abcpp "phosphatidylglycerol transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pg141[c] --> adp[c] + h[c] + pg141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg141 4 PG160abcpp "phosphatidylglycerol transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pg160[c] --> adp[c] + h[c] + pg160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg160 4 PG161abcpp "phosphatidylglycerol transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pg161[c] --> adp[c] + h[c] + pg161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg161 4 PG180abcpp "phosphatidylglycerol transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pg180[c] --> adp[c] + h[c] + pg180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg180 4 PG181abcpp "phosphatidylglycerol transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pg181[c] --> adp[c] + h[c] + pg181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pg181, h 4 PGAMT phosphoglucosamine mutase [c] : gam1p <==> gam6p B3176 ( PHOSGLUCOSAMINEMUT-RXN ) PHOSGLUCOSAMINEMUT-RXN :gene-match D-glucosamine-6-phosphate = D-glucosamine 1-phosphate 2 PGCD phosphoglycerate dehydrogenase [c] : 3pg + nad --> 3php + h + nadh B2913 ( PGLYCDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) PGLYCDEHYDROG-RXN :gene-match 3-phosphoglycerate + NAD+ = 3-phospho-hydroxypyruvate + NADH h 4 PGI glucose-6-phosphate isomerase [c] : g6p <==> f6p B4025 ( PGLUCISOM-RXN ) PGLUCISOM-RXN :gene-match beta-D-glucose-6-phosphate = D-fructose-6-phosphate 2 PGK phosphoglycerate kinase [c] : 3pg + atp <==> 13dpg + adp B2926 ( PHOSGLYPHOS-RXN ) PHOSGLYPHOS-RXN :gene-match 3-phosphoglycerate + ATP = 1,3-diphosphateglycerate + ADP 4 PGL 6-phosphogluconolactonase [c] : 6pgl + h2o --> 6pgc + h B0767 ( 6PGLUCONOLACT-RXN ) ( ( RIGHT REMOVE PROTON ) ) 6PGLUCONOLACT-RXN :gene-match D-glucono-delta-lactone-6-phosphate + H2O -> 6-phospho-D-gluconate h 3 PGLYCP Phosphoglycolate phosphatase [c] : 2pglyc + h2o --> glyclt + pi B3385 ( GPH-RXN ) GPH-RXN :gene-match H2O + 2-phosphoglycolate = glycolate + phosphate 4 PGM phosphoglycerate mutase [c] : 2pg <==> 3pg ( B3612 OR B4395 OR B0755 ) ( 3PGAREARR-RXN ) 3PGAREARR-RXN :gene-match 3-phosphoglycerate = 2-phosphoglycerate 2 PGMT phosphoglucomutase [c] : g1p <==> g6p ( B0688 OR B2690 ) PHOSPHOGLUCMUT-RXN :gene-match alpha-D-glucose 1-phosphate = alpha-D-glucose-6-phosphate ALPHA-GLC-6-P g6p 1 PGP120abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pgp120[c] --> adp[c] + h[c] + pgp120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp120 4 PGP140abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pgp140[c] --> adp[c] + h[c] + pgp140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp140 4 PGP141abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pgp141[c] --> adp[c] + h[c] + pgp141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp141 4 PGP160abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pgp160[c] --> adp[c] + h[c] + pgp160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp160 4 PGP161abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pgp161[c] --> adp[c] + h[c] + pgp161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp161 4 PGP180abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pgp180[c] --> adp[c] + h[c] + pgp180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pgp180, h 4 PGP181abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pgp181[c] --> adp[c] + h[c] + pgp181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pgp181, h 4 PGPP120 phosphatidylglycerol phosphate phosphatase ( n-C14:0 ) [c] : h2o + pgp120 --> pg120 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp120, pg120 2 PGPP120pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C14:0 )" [p] : h2o + pgp120 --> pg120 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp120, pg120 2 PGPP140 phosphatidylglycerol phosphate phosphatase ( n-C14:0 ) [c] : h2o + pgp140 --> pg140 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp140, pg140 2 PGPP140pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C14:0 )" [p] : h2o + pgp140 --> pg140 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp140, pg140 2 PGPP141 phosphatidylglycerol phosphate phosphatase ( n-C14:1 ) [c] : h2o + pgp141 --> pg141 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pg141, pgp141 2 PGPP141pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C14:1 )" [p] : h2o + pgp141 --> pg141 + pi ( B0418 OR B1278 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pg141, pgp141 2 PGPP160 phosphatidylglycerol phosphate phosphatase ( n-C16:0 ) [c] : h2o + pgp160 --> pg160 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp160, pg160 2 PGPP160pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C16:0 )" [p] : h2o + pgp160 --> pg160 + pi ( B0418 OR B1278 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp160, pg160 2 PGPP161 phosphatidylglycerol phosphate phosphatase ( n-C16:1 ) [c] : h2o + pgp161 --> pg161 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pg161, pgp161 2 PGPP161pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C16:1 )" [p] : h2o + pgp161 --> pg161 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pg161, pgp161 2 PGPP180 phosphatidylglycerol phosphate phosphatase ( n-C18:0 ) [c] : h2o + pgp180 --> pg180 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp180, pg180 2 PGPP180pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C18:0 )" [p] : h2o + pgp180 --> pg180 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp180, pg180 2 PGPP181 phosphatidylglycerol phosphate phosphatase ( n-C18:1 ) [c] : h2o + pgp181 --> pg181 + pi ( B0418 OR B1278 ) ( PGPPHOSPHA-RXN ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate 4 PGPP181pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C18:1 )" [p] : h2o + pgp181 --> pg181 + pi ( B0418 OR B1278 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate 4 PGSA120 Phosphatidylglycerol synthase ( n-C12:0 ) [c] : cdpdddecg + glyc3p --> cmp + h + pgp120 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate pgp181, cdpdtdecg h, cdpdddecg, pgp120 2 PGSA140 Phosphatidylglycerol synthase ( n-C14:0 ) [c] : cdpdtdecg + glyc3p --> cmp + h + pgp140 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate pgp181 h, pgp140 3 PGSA141 Phosphatidylglycerol synthase ( n-C14:1 ) [c] : cdpdtdec7eg + glyc3p --> cmp + h + pgp141 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate pgp181, cdpdtdecg h, pgp141, cdpdtdec7eg 2 PGSA160 Phosphatidylglycerol synthase ( n-C16:0 ) [c] : cdpdhdecg + glyc3p --> cmp + h + pgp160 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate pgp181, cdpdtdecg cdpdhdecg, pgp160, h 2 PGSA161 Phosphatidylglycerol synthase ( n-C16:1 ) [c] : cdpdhdec9eg + glyc3p --> cmp + h + pgp161 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate pgp181, cdpdtdecg cdpdhdec9eg, pgp161, h 2 PGSA180 Phosphatidylglycerol synthase ( n-C18:0 ) [c] : cdpdodecg + glyc3p --> cmp + h + pgp180 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate pgp181, cdpdtdecg pgp180, h, cdpdodecg 2 PGSA181 Phosphatidylglycerol synthase ( n-C18:1 ) [c] : cdpdodec11eg + glyc3p --> cmp + h + pgp181 B1912 ( PHOSPHAGLYPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHAGLYPSYN-RXN :gene-match a CDP-diacylglycerol + sn-glycerol-3-phosphate = CMP + an L-1-phosphatidylglycerol-phosphate cdpdtdecg h, cdpdodec11eg 3 PHEMEabcpp protoheme transport via ABC system ( periplasm ) atp[c] + h2o[c] + pheme[c] --> adp[c] + h[c] + pheme[p] + pi[c] ( B2201 AND B2200 AND B2199 ) ( TRANS-RXN0-162 ) ( ( RIGHT REMOVE PROTON ) ) TRANS-RXN0-162 :gene-match protoheme IX[cytosol] + ATP + H2O =phosphate + ADP + protoheme IX[periplasmic space] h 5 PHEt2rpp L-phenylalanine reversible transport via proton symport ( periplasm ) h[p] + phe-L[p] <==> h[c] + phe-L[c] ( B0576 OR B0112 ) ( TRANS-RXN-56 ) TRANS-RXN-56 :gene-match H+[periplasmic space] + L-phenylalanine[periplasmic space] =H+[cytosol] + L-phenylalanine[cytosol] 2 PHETA1 phenylalanine transaminase [c] : akg + phe-L <==> glu-L + phpyr ( B3770 OR B0928 OR B4054 ) ( PHEAMINOTRANS-RXN ) PHEAMINOTRANS-RXN :gene-match phenylpyruvate + L-glutamate = L-phenylalanine + alpha-ketoglutarate 4 PHEtex L-phenylalanine transport via diffusion ( extracellular to periplasm ) phe-L[e] <==> phe-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da phe-L 0 PHETRS Phenylalanyl-tRNA synthetase [c] : atp + phe-L + trnaphe --> amp + phetrna + ppi ( B1713 AND B1714 ) ( PHENYLALANINE--TRNA-LIGASE-RXN ) PHENYLALANINE--TRNA-LIGASE-RXN :gene-match tRNAphe + L-phenylalanine + ATP -> L-phenylalanyl-tRNAphe + diphosphate + AMP 6 PHYTSpp Phytase ( periplasm ) [p] : ( 6 ) h2o + minohp --> inost + ( 6 ) pi B0980 6-PHYT-RXN :gene-match H2O + phytate = phosphate + D-myo-inositol (1,2,3,4,5)-pentakisphosphate MI-PENTAKISPHOSPHATE inost 3 PIt2rpp phosphate reversible transport via symport ( periplasm ) h[p] + pi[p] <==> h[c] + pi[c] ( B2987 OR B3493 ) ( TRANS-RXN-114 ) TRANS-RXN-114 :gene-match H+[periplasmic space] + phosphate[periplasmic space] =H+[cytosol] + phosphate[cytosol] 2 PItex phosphate transport via diffusion ( extracellular to periplasm ) pi[e] <==> pi[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pi 0 PIuabcpp "phosphate transport via ABC system ( uptake, periplasm )" atp[c] + h2o[c] + pi[p] --> adp[c] + h[c] + ( 2 ) pi[c] ( B3726 AND B3725 AND B3727 AND B3728 ) ABC-27-RXN :gene-match ATP + phosphate[periplasmic space] + H2O =ADP + phosphate[cytosol] + phosphate[cytosol] h 4 PLIPA1A120pp "Phospholipase A1 ( phosphatidate, n-C12:0 ) ( periplasm )" [p] : h2o + pa120 --> 2ddecg3p + ddca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 2ddecg3p, pa120, ddca 1 PLIPA1A140pp "Phospholipase A1 ( phosphatidate, n-C14:0 ) ( periplasm )" [p] : h2o + pa140 --> 2tdecg3p + ttdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 2tdecg3p, ttdca, pa140 1 PLIPA1A141pp "Phospholipase A1 ( phosphatidate, n-C14:1 ) ( periplasm )" [p] : h2o + pa141 --> 2tdec7eg3p + ttdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pa141, 2tdec7eg3p, ttdcea 1 PLIPA1A160pp "Phospholipase A1 ( phosphatidate, n-C16:0 ) ( periplasm )" [p] : h2o + pa160 --> 2hdecg3p + hdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, 2hdecg3p, pa160 1 PLIPA1A161pp "Phospholipase A1 ( phosphatidate, n-C16:1 ) ( periplasm )" [p] : h2o + pa161 --> 2hdec9eg3p + hdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdcea, 2hdec9eg3p, pa161 1 PLIPA1A180pp "Phospholipase A1 ( phosphatidate, n-C18:0 ) ( periplasm )" [p] : h2o + pa180 --> 2odecg3p + ocdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pa180, 2odecg3p, ocdca 1 PLIPA1A181pp "Phospholipase A1 ( phosphatidate, n-C18:1 ) ( periplasm )" [p] : h2o + pa181 --> 2odec11eg3p + ocdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines ocdcea, pa181, 2odec11eg3p 1 PLIPA1E120pp "Phospholipase A1 ( phosphatidylethanolamine, n-C12:0 ) ( periplasm )" [p] : h2o + pe120 --> 2agpe120 + ddca + h B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 2agpe120, ddca, pe120 1 PLIPA1E140pp "Phospholipase A1 ( phosphatidylethanolamine, n-C14:0 ) ( periplasm )" [p] : h2o + pe140 --> 2agpe140 + h + ttdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 2agpe140, h, pe140, ttdca 1 PLIPA1E141pp "Phospholipase A1 ( phosphatidylethanolamine, n-C14:1 ) ( periplasm )" [p] : h2o + pe141 --> 2agpe141 + h + ttdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 2agpe141, h, pe141, ttdcea 1 PLIPA1E160pp "Phospholipase A1 ( phosphatidylethanolamine, n-C16:0 ) ( periplasm )" [p] : h2o + pe160 --> 2agpe160 + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, pe160, 2agpe160, h 1 PLIPA1E161pp "Phospholipase A1 ( phosphatidylethanolamine, n-C16:1 ) ( periplasm )" [p] : h2o + pe161 --> 2agpe161 + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pe161, h, hdcea, 2agpe161 1 PLIPA1E180pp "Phospholipase A1 ( phosphatidylethanolamine, n-C18:0 ) ( periplasm )" [p] : h2o + pe180 --> 2agpe180 + h + ocdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe180, 2agpe180, ocdca 1 PLIPA1E181pp "Phospholipase A1 ( phosphatidylethanolamine, n-C18:1 ) ( periplasm )" [p] : h2o + pe181 --> 2agpe181 + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe181, ocdcea, 2agpe181 1 PLIPA1G120pp "Phospholipase A1 ( phosphatidylglycerol, n-C12:0 ) ( periplasm )" [p] : h2o + pg120 --> 2agpg120 + ddca + h B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 2agpg120, h, ddca, pg120 1 PLIPA1G140pp "Phospholipase A1 ( phosphatidylglycerol, n-C14:0 ) ( periplasm )" [p] : h2o + pg140 --> 2agpg140 + h + ttdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 2agpg140, pg140, ttdca 1 PLIPA1G141pp "Phospholipase A1 ( phosphatidylglycerol, n-C14:1 ) ( periplasm )" [p] : h2o + pg141 --> 2agpg141 + h + ttdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 2agpg141, pg141, ttdcea 1 PLIPA1G160pp "Phospholipase A1 ( phosphatidylglycerol, n-C16:0 ) ( periplasm )" [p] : h2o + pg160 --> 2agpg160 + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, h, pg160, 2agpg160 1 PLIPA1G161pp "Phospholipase A1 ( phosphatidylglycerol, n-C16:1 ) ( periplasm )" [p] : h2o + pg161 --> 2agpg161 + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pg161, hdcea, 2agpg161 1 PLIPA1G180pp "Phospholipase A1 ( phosphatidylglycerol, n-C18:0 ) ( periplasm )" [p] : h2o + pg180 --> 2agpg180 + h + ocdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pg180, h, 2agpg180, ocdca 1 PLIPA1G181pp "Phospholipase A1 ( phosphatidylglycerol, n-C18:1 ) ( periplasm )" [p] : h2o + pg181 --> 2agpg181 + h + ocdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pg181, h, ocdcea, 2agpg181 1 PLIPA2A120pp "Phospholipase A2 ( phosphatidate, n-C12:0 ) ( periplasm )" [p] : h2o + pa120 --> 1ddecg3p + ddca + h B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pa120, ddca, 1ddecg3p, h 1 PLIPA2A140pp "Phospholipase A2 ( phosphatidate, n-C14:0 ) ( periplasm )" [p] : h2o + pa140 --> 1tdecg3p + h + ttdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pa140, 1tdecg3p, ttdca 1 PLIPA2A141pp "Phospholipase A2 ( phosphatidate, n-C14:1 ) ( periplasm )" [p] : h2o + pa141 --> 1tdec7eg3p + h + ttdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pa141, 1tdec7eg3p, ttdcea 1 PLIPA2A160pp "Phospholipase A2 ( phosphatidate, n-C16:0 ) ( periplasm )" [p] : h2o + pa160 --> 1hdecg3p + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, 1hdecg3p, pa160, h 1 PLIPA2A161pp "Phospholipase A2 ( phosphatidate, n-C16:1 ) ( periplasm )" [p] : h2o + pa161 --> 1hdec9eg3p + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, hdcea, 1hdec9eg3p, pa161 1 PLIPA2A180pp "Phospholipase A2 ( phosphatidate, n-C18:0 ) ( periplasm )" [p] : h2o + pa180 --> 1odecg3p + h + ocdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pa180, 1odecg3p, ocdca 1 PLIPA2A181pp "Phospholipase A2 ( phosphatidate, n-C18:1 ) ( periplasm )" [p] : h2o + pa181 --> 1odec11eg3p + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 1odec11eg3p, ocdcea, pa181 1 PLIPA2E120pp "Phospholipase A2 ( phosphatidylethanolamine, n-C12:0 ) ( periplasm )" [p] : h2o + pe120 --> 1agpe120 + ddca + h B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, ddca, pe120, 1agpe120 1 PLIPA2E140pp "Phospholipase A2 ( phosphatidylethanolamine, n-C14:0 ) ( periplasm )" [p] : h2o + pe140 --> 1agpe140 + h + ttdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 1agpe140, pe140, ttdca, h 1 PLIPA2E141pp "Phospholipase A2 ( phosphatidylethanolamine, n-C14:1 ) ( periplasm )" [p] : h2o + pe141 --> 1agpe141 + h + ttdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 1agpe141, h, pe141, ttdcea 1 PLIPA2E160pp "Phospholipase A2 ( phosphatidylethanolamine, n-C16:0 ) ( periplasm )" [p] : h2o + pe160 --> 1agpe160 + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, pe160, 1agpe160, h 1 PLIPA2E161pp "Phospholipase A2 ( phosphatidylethanolamine, n-C16:1 ) ( periplasm )" [p] : h2o + pe161 --> 1agpe161 + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pe161, h, 1agpe161, hdcea 1 PLIPA2E180pp "Phospholipase A2 ( phosphatidylethanolamine, n-C18:0 ) ( periplasm )" [p] : h2o + pe180 --> 1agpe180 + h + ocdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe180, 1agpe180, ocdca 1 PLIPA2E181pp "Phospholipase A2 ( phosphatidylethanolamine, n-C18:1 ) ( periplasm )" [p] : h2o + pe181 --> 1agpe181 + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe181, 1agpe181, ocdcea 1 PLIPA2G120pp "Phospholipase A2 ( phosphatidylglycerol, n-C12:0 ) ( periplasm )" [p] : h2o + pg120 --> 1agpg120 + ddca + h B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 1agpg120, pg120, ddca, h 1 PLIPA2G140pp "Phospholipase A2 ( phosphatidylglycerol, n-C14:0 ) ( periplasm )" [p] : h2o + pg140 --> 1agpg140 + h + ttdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 1agpg140, pg140, ttdca 1 PLIPA2G141pp "Phospholipase A2 ( phosphatidylglycerol, n-C14:1 ) ( periplasm )" [p] : h2o + pg141 --> 1agpg141 + h + ttdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pg141, 1agpg141, ttdcea 1 PLIPA2G160pp "Phospholipase A2 ( phosphatidylglycerol, n-C16:0 ) ( periplasm )" [p] : h2o + pg160 --> 1agpg160 + h + hdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, h, pg160, 1agpg160 1 PLIPA2G161pp "Phospholipase A2 ( phosphatidylglycerol, n-C16:1 ) ( periplasm )" [p] : h2o + pg161 --> 1agpg161 + h + hdcea B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 1agpg161, hdcea, pg161 1 PLIPA2G180pp "Phospholipase A2 ( phosphatidylglycerol, n-C18:0 ) ( periplasm )" [p] : h2o + pg180 --> 1agpg180 + h + ocdca B3821 ( :UNMAPPED-CPDS ) PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pg180, 1agpg180, ocdca 1 PLIPA2G181pp "Phospholipase A2 ( phosphatidylglycerol, n-C18:1 ) ( periplasm )" [p] : h2o + pg181 --> 1agpg181 + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pg181, h, 1agpg181, ocdcea 1 PMANM phosphomannomutase [c] : man1p <==> man6p B2048 ( PHOSMANMUT-RXN ) PHOSMANMUT-RXN :gene-match alpha-D-mannose 1-phosphate = mannose-6-phosphate 2 PMPK phosphomethylpyrimidine kinase [c] : 4ampm + atp --> 2mahmp + adp B2103 ( PYRIMSYN3-RXN ) PYRIMSYN3-RXN :gene-match hydroxymethylpyrimidine phosphate + ATP = 4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate + ADP 4 PNTK pantothenate kinase [c] : atp + pnto-R --> 4ppan + adp + h B3974 ( PANTOTHENATE-KIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PANTOTHENATE-KIN-RXN :gene-match pantothenate + ATP = D-4'-phosphopantothenate + ADP h 4 PNTOt4pp Pantothenate sodium symporter ( periplasm ) na1[p] + pnto-R[p] --> na1[c] + pnto-R[c] B3258 ( TRANS-RXN-117 ) TRANS-RXN-117 :gene-match Na+[periplasmic space] + pantothenate[periplasmic space] =Na+[cytosol] + pantothenate[cytosol] 2 PNTOtex Pantothenate transport via diffusion ( extracellular to periplasm ) pnto-R[e] <==> pnto-R[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pnto-R 0 POX pyruvate oxidase [c] : h2o + pyr + q8 --> ac + co2 + q8h2 B0871 ( PYRUVOXID-RXN ) PYRUVOXID-RXN :gene-match pyruvate + ubiquinone-8 + H2O = acetate + CO2 + ubiquinol-8 6 PPA inorganic diphosphatase [c] : h2o + ppi --> h + ( 2 ) pi ( B4226 OR B2744 OR B2502 ) ( INORGPYROPHOSPHAT-RXN ) ( ( RIGHT REMOVE PROTON ) ) INORGPYROPHOSPHAT-RXN :gene-match H2O + diphosphate -> 2 phosphate h 3 PPA2 inorganic triphosphatase [c] : h2o + pppi --> h + pi + ppi ( B2502 OR B2744 ) ( TRIPHOSPHATASE-RXN ) ( :METACYC ( RIGHT REMOVE PROTON ) ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides h, ppi, pppi 2 PPAKr Propionate kinase [c] : adp + ppap <==> atp + ppa B3115 ( PROPKIN-RXN ) PROPKIN-RXN :gene-match ATP + propionate = ADP + propionyl-P 4 PPALtex propanal transport via diffusion ( extracellular to periplasm ) ppal[e] <==> ppal[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ppal 0 PPAt4pp Na+/Propionate symporter ( periplasm ) na1[p] + ppa[p] --> na1[c] + ppa[c] B1015 TRANS-RXN-118 :gene-match Na+[periplasmic space] + L-proline[periplasmic space] =Na+[cytosol] + L-proline[cytosol] pro-L ppa 1 PPAtex propionate transport via diffusion ppa[e] <==> ppa[p] ( B1377 OR B0929 OR B2215 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ppa 0 PPBNGS porphobilinogen synthase [c] : ( 2 ) 5aop --> h + ( 2 ) h2o + ppbng B0369 ( PORPHOBILSYNTH-RXN ) ( ( RIGHT REMOVE PROTON ) ) PORPHOBILSYNTH-RXN :gene-match 2 5-amino-levulinate = 2 H2O + porphobilinogen h 3 PPC phosphoenolpyruvate carboxylase [c] : co2 + h2o + pep --> h + oaa + pi B3956 ( PEPCARBOX-RXN ) ( ( RIGHT REMOVE PROTON ) ) PEPCARBOX-RXN :gene-match oxaloacetate + phosphate = phosphoenolpyruvate + H2O + CO2 h 5 PPCDC phosphopantothenoylcysteine decarboxylase [c] : 4ppcys + h --> co2 + pan4p B3639 ( P-PANTOCYSDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) P-PANTOCYSDECARB-RXN :gene-match R-4'-phosphopantothenoyl-L-cysteine = pantetheine 4'-phosphate + CO2 h 3 PPCK phosphoenolpyruvate carboxykinase [c] : atp + oaa --> adp + co2 + pep B3403 ( PEPCARBOXYKIN-RXN ) PEPCARBOXYKIN-RXN :gene-match oxaloacetate + ATP = CO2 + phosphoenolpyruvate + ADP 5 PPCSCT Propanoyl-CoA: succinate CoA-transferase [c] : ppcoa + succ --> ppa + succoa B2920 ( RXN0-268 ) RXN0-268 :gene-match propionyl-CoA + succinate = propionate + succinyl-CoA 4 PPGPPDP "guanosine-3',5'-bis( diphosphate ) 3'-diphosphatase" [c] : h2o + ppgpp --> gdp + ppi B3650 ( PPGPPSYN-RXN ) PPGPPSYN-RXN :gene-match guanosine 5'-diphosphate,3'-diphosphate + H2O = diphosphate + GDP 4 PPK2r polyphosphate kinase [c] : atp + ppi <==> adp + pppi B2501 POLYPHOSPHATE-KINASE-RXN :gene-match ATP + (POLYPHOSPHATE)(N) = ADP + (polyphosphate)(n+1) Long-Chain-Polyphosphate ppi, pppi 2 PPKr polyphosphate kinase [c] : atp + pi <==> adp + ppi B2501 POLYPHOSPHATE-KINASE-RXN :gene-match ATP + (POLYPHOSPHATE)(N) = ADP + (polyphosphate)(n+1) Long-Chain-Polyphosphate ppi, pi 2 PPM phosphopentomutase [c] : r1p <==> r5p ( B4383 OR B3380 ) ( PPENTOMUT-RXN ) PPENTOMUT-RXN :gene-match ribose-1-phosphate = D-ribose-5-phosphate 2 PPM2 phosphopentomutase 2 ( deoxyribose ) [c] : 2dr1p <==> 2dr5p B4383 ( D-PPENTOMUT-RXN ) D-PPENTOMUT-RXN :gene-match deoxyribose-1-phosphate = deoxyribose-5-phosphate 2 PPNCL2 phosphopantothenate-cysteine ligase [c] : 4ppan + ctp + cys-L --> 4ppcys + cmp + h + ppi B3639 ( P-PANTOCYSLIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) P-PANTOCYSLIG-RXN :gene-match D-4'-phosphopantothenate + L-cysteine + CTP = diphosphate + CMP + R-4'-phosphopantothenoyl-L-cysteine h 6 PPND prephenate dehydrogenase [c] : nad + pphn --> 34hpp + co2 + nadh B2600 ( PREPHENATEDEHYDROG-RXN ) PREPHENATEDEHYDROG-RXN :gene-match prephenate + NAD+ -> p-hydroxyphenylpyruvate + CO2 + NADH 5 PPNDH prephenate dehydratase [c] : h + pphn --> co2 + h2o + phpyr B2599 ( PREPHENATEDEHYDRAT-RXN ) ( ( LEFT REMOVE PROTON ) ) PREPHENATEDEHYDRAT-RXN :gene-match prephenate -> phenylpyruvate + H2O + CO2 h 4 PPPGO protoporphyrinogen oxidase ( aerobic ) [c] : ( 1.5 ) o2 + pppg9 --> ( 3 ) h2o + ppp9 B3850 ( PROTOPORGENOXI-RXN ) PROTOPORGENOXI-RXN :gene-match 1.5 O2 + protoporphyrinogen IX = 3 H2O + protoporphyrin IX 4 PPPGO3 protoporphyrinogen oxidase ( anaerobic ) [c] : ( 3 ) fum + pppg9 --> ppp9 + ( 3 ) succ B3850 PROTOPORGENOXI-RXN :gene-match 1.5 O2 + protoporphyrinogen IX = 3 H2O + protoporphyrin IX h2o, o2 succ, fum 2 PPPNDO Phenylpropanoate Dioxygenase [c] : h + nadh + o2 + pppn --> cechddd + nad ( B2538 AND B2539 AND B2540 AND B2542 ) ( HCAMULTI-RXN ) HCAMULTI-RXN :gene-match 3-phenylpropionate + NADH + O2 + H+ = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ cenchddd cechddd 5 PPPNtex 3-phenylpropionate transport via diffusion ( extracellular to periplasm ) pppn[e] <==> pppn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pppn 0 PPS phosphoenolpyruvate synthase [c] : atp + h2o + pyr --> amp + ( 2 ) h + pep + pi B1702 ( PEPSYNTH-RXN ) ( ( RIGHT REMOVE PROTON ) ) PEPSYNTH-RXN :gene-match H2O + pyruvate + ATP = phosphate + phosphoenolpyruvate + AMP h 6 PPTHpp Phosphonate hydrogenase ( periplasm ) [p] : h2o + ppt --> h2 + pi B0383 ALKAPHOSPHA-RXN :gene-match a phosphate monoester + H2O = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters h2, ppt 2 PPTtex Phosphonate transport via diffusion ( extracellular to periplasm ) ppt[e] <==> ppt[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ppt 0 PRAGSr phosphoribosylglycinamide synthase [c] : atp + gly + pram <==> adp + gar + h + pi B4005 ( GLYRIBONUCSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) GLYRIBONUCSYN-RXN :gene-match ATP + 5-phospho-beta-D-ribosyl-amine + glycine = ADP + phosphate + 5-phospho-ribosyl-glycineamide h 6 PRAIi phosphoribosylanthranilate isomerase ( irreversible ) [c] : pran --> 2cpr5p B1262 ( PRAISOM-RXN ) PRAISOM-RXN :gene-match N-(5'-phosphoribosyl)-anthranilate -> 1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate 2 PRAIS phosphoribosylaminoimidazole synthase [c] : atp + fpram --> adp + air + ( 2 ) h + pi B2499 ( AIRS-RXN ) ( ( RIGHT REMOVE PROTON ) ) AIRS-RXN :gene-match ATP + 5-phosphoribosyl-N-formylglycineamidine -> ADP + phosphate + 5-aminoimidazole ribonucleotide h 5 PRAMPC phosphoribosyl-AMP cyclohydrolase [c] : h2o + prbamp --> prfp B2026 ( HISTCYCLOHYD-RXN ) HISTCYCLOHYD-RXN :gene-match phosphoribosyl-AMP + H2O -> phosphoribosylformiminoAICAR-phosphate 3 PRASCS phosphoribosylaminoimidazolesuccinocarboxamide synthase [c] : 5aizc + asp-L + atp <==> 25aics + adp + h + pi B2476 ( SAICARSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) SAICARSYN-RXN :gene-match ATP + 4-carboxyaminoimidazole ribonucleotide + L-aspartate = ADP + phosphate + 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole h 6 PRATPP phosphoribosyl-ATP pyrophosphatase [c] : h2o + prbatp --> h + ppi + prbamp B2026 ( HISTPRATPHYD-RXN ) ( ( RIGHT REMOVE PROTON ) ) HISTPRATPHYD-RXN :gene-match phosphoribosyl-ATP + H2O -> phosphoribosyl-AMP + diphosphate h 4 PRFGS phosphoribosylformylglycinamidine synthase [c] : atp + fgam + gln-L + h2o --> adp + fpram + glu-L + h + pi B2557 ( FGAMSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) FGAMSYN-RXN :gene-match ATP + 5'-phosphoribosyl-N-formylglycineamide + L-glutamine + H2O -> ADP + phosphate + 5-phosphoribosyl-N-formylglycineamidine + L-glutamate h 8 PRMICI 1-( 5-phosphoribosyl )-5-[( 5-phosphoribosylamino )methylideneamino )imidazole-4-carboxamide isomerase [c] : prfp <==> prlp B2024 ( PRIBFAICARPISOM-RXN ) PRIBFAICARPISOM-RXN :gene-match phosphoribosylformiminoAICAR-phosphate -> phosphoribulosylformimino-AICAR-P 2 PROabcpp L-proline transport via ABC system ( periplasm ) atp[c] + h2o[c] + pro-L[p] --> adp[c] + h[c] + pi[c] + pro-L[c] ( B2677 AND B2678 AND B2679 ) ( ABC-26-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] h 5 PROD2 Proline dehydrogenase [c] : fad + pro-L --> 1pyr5c + fadh2 + h B1014 ( RXN-821 ) ( ( RIGHT REMOVE PROTON ) ) RXN-821 :gene-match L-proline + FAD = pyrroline 5-carboxylate + FADH2 h 4 PROGLYabcpp L-Prolinylglycine ( Pro-Gly ) transport via ABC system ( periplasm ) atp[c] + h2o[c] + progly[p] --> adp[c] + h[c] + pi[c] + progly[c] ( B3544 AND B3543 AND B3542 AND B3541 AND B3540 ) ( :UNMAPPED-CPDS ) ABC-8-RXN :gene-match ATP + a dipeptide[periplasmic space] + H2O =ADP + phosphate + a dipeptide[cytosol] DIPEPTIDES h, progly 4 PROGLYtex L-Prolinylglycine transport via diffusion ( extracellular to periplasm ) progly[e] <==> progly[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :UNMAPPED-CPDS ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da progly 0 PROt2rpp L-proline reversible transport via proton symport ( periplasm ) h[p] + pro-L[p] <==> h[c] + pro-L[c] B4111 ( TRANS-RXN-29 ) TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] 2 PROt4pp Na+/Proline-L symporter ( periplasm ) na1[p] + pro-L[p] --> na1[c] + pro-L[c] B1015 ( TRANS-RXN-118 ) TRANS-RXN-118 :gene-match Na+[periplasmic space] + L-proline[periplasmic space] =Na+[cytosol] + L-proline[cytosol] 2 PROtex L-proline transport via diffusion ( extracellular to periplasm ) pro-L[e] <==> pro-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pro-L 0 PROTRS Prolyl-tRNA synthetase [c] : atp + pro-L + trnapro --> amp + ppi + protrna B0194 ( PROLINE--TRNA-LIGASE-RXN ) PROLINE--TRNA-LIGASE-RXN :gene-match tRNApro + L-proline + ATP -> L-prolyl-tRNApro + diphosphate + AMP 6 PRPPS phosphoribosylpyrophosphate synthetase [c] : atp + r5p <==> amp + h + prpp B1207 ( PRPPSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PRPPSYN-RXN :gene-match ATP + D-ribose-5-phosphate = 5-phosphoribosyl 1-pyrophosphate + AMP h 4 PSCLYStex psicoselysine transporter via diffusion ( extracellular ) psclys[e] <==> psclys[p] ( B2215 OR B1377 OR B0929 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da psclys 0 PSCVT 3-phosphoshikimate 1-carboxyvinyltransferase [c] : pep + skm5p <==> 3psme + pi B0908 ( 2.5.1.19-RXN ) 2.5.1.19-RXN :gene-match shikimate-3-phosphate + phosphoenolpyruvate = 5-enolpyruvyl-shikimate-3-phosphate + phosphate 4 PSD120 Phosphatidylserine decarboxylase ( n-C12:0 ) [c] : h + ps120 --> co2 + pe120 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 pe181, ps181 h, ps120, pe120 1 PSD140 Phosphatidylserine decarboxylase ( n-C14:0 ) [c] : h + ps140 --> co2 + pe140 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 pe181, ps181 h, ps140, pe140 1 PSD141 Phosphatidylserine decarboxylase ( n-C14:1 ) [c] : h + ps141 --> co2 + pe141 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 pe181, ps181 ps141, h, pe141 1 PSD160 Phosphatidylserine decarboxylase ( n-C16:0 ) [c] : h + ps160 --> co2 + pe160 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 pe181, ps181 h, ps160, pe160 1 PSD161 Phosphatidylserine decarboxylase ( n-C16:1 ) [c] : h + ps161 --> co2 + pe161 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 pe181, ps181 pe161, h, ps161 1 PSD180 Phosphatidylserine decarboxylase ( n-C18:0 ) [c] : h + ps180 --> co2 + pe180 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 pe181, ps181 h, pe180, ps180 1 PSD181 Phosphatidylserine decarboxylase ( n-C18:1 ) [c] : h + ps181 --> co2 + pe181 B4160 ( PHOSPHASERDECARB-RXN ) ( ( LEFT REMOVE PROTON ) ) PHOSPHASERDECARB-RXN :gene-match an L-1-phosphatidylserine = an L-1-phosphatidyl-ethanolamine + CO2 h 3 PSERT phosphoserine transaminase [c] : 3php + glu-L --> akg + pser-L B0907 ( PSERTRANSAM-RXN ) PSERTRANSAM-RXN :gene-match 3-phospho-serine + alpha-ketoglutarate = 3-phospho-hydroxypyruvate + L-glutamate 4 PSERtex phospho-L-serine transport via diffusion ( extracellular to periplasm ) pser-L[e] <==> pser-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pser-L 0 PSP_L phosphoserine phosphatase ( L-serine ) [c] : h2o + pser-L --> pi + ser-L B4388 ( RXN0-5114 ) RXN0-5114 :gene-match 3-phospho-serine + H2O -> L-serine + phosphate 4 PSP_Lpp phospho-L-serine phosphatase ( periplasmic ) [p] : h2o + pser-L --> pi + ser-L B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters ser-L, pser-L 2 PSSA120 Phosphatidylserine syntase ( n-C12:0 ) [c] : cdpdddecg + ser-L --> cmp + h + ps120 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine ps181, cdpdtdecg h, ps120, cdpdddecg 2 PSSA140 Phosphatidylserine syntase ( n-C14:0 ) [c] : cdpdtdecg + ser-L --> cmp + h + ps140 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine ps181 h, ps140 3 PSSA141 Phosphatidylserine syntase ( n-C14:1 ) [c] : cdpdtdec7eg + ser-L --> cmp + h + ps141 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine ps181, cdpdtdecg ps141, h, cdpdtdec7eg 2 PSSA160 Phosphatidylserine syntase ( n-C16:0 ) [c] : cdpdhdecg + ser-L --> cmp + h + ps160 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine ps181, cdpdtdecg cdpdhdecg, ps160, h 2 PSSA161 Phosphatidylserine syntase ( n-C16:1 ) [c] : cdpdhdec9eg + ser-L --> cmp + h + ps161 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine ps181, cdpdtdecg cdpdhdec9eg, ps161, h 2 PSSA180 Phosphatidylserine syntase ( n-C18:0 ) [c] : cdpdodecg + ser-L --> cmp + h + ps180 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine ps181, cdpdtdecg h, cdpdodecg, ps180 2 PSSA181 Phosphatidylserine syntase ( n-C18:1 ) [c] : cdpdodec11eg + ser-L --> cmp + h + ps181 B2585 ( PHOSPHASERSYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PHOSPHASERSYN-RXN :gene-match a CDP-diacylglycerol + L-serine = CMP + an L-1-phosphatidylserine cdpdtdecg h, cdpdodec11eg 3 PTA2 Phosphate acetyltransferase [c] : pi + ppcoa --> coa + ppap B2297 ( PTAALT-RXN ) PTAALT-RXN :gene-match propionyl-CoA + phosphate = propionyl-P + coenzyme A 4 PTAr phosphotransacetylase [c] : accoa + pi <==> actp + coa ( B2297 OR B2458 ) ( PHOSACETYLTRANS-RXN ) PHOSACETYLTRANS-RXN :gene-match phosphate + acetyl-CoA = acetylphosphate + coenzyme A 4 PTHRpp phospho-L-threonine phosphatase ( periplasmic ) [p] : h2o + thrp --> pi + thr-L B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters thr-L, thrp 2 PTPATi pantetheine-phosphate adenylyltransferase [c] : atp + h + pan4p --> dpcoa + ppi B3634 ( PANTEPADENYLYLTRAN-RXN ) ( ( LEFT REMOVE PROTON ) ) PANTEPADENYLYLTRAN-RXN :gene-match pantetheine 4'-phosphate + ATP = dephospho-CoA + diphosphate h 4 PTRCabcpp putrescine transport via ABC system ( periplasm ) atp[c] + h2o[c] + ptrc[p] --> adp[c] + h[c] + pi[c] + ptrc[c] ( ( B0854 AND B0855 AND B0856 AND B0857 ) OR ( B1126 AND B1125 AND B1124 AND B1123 ) OR ( B1440 AND B1441 AND B1442 AND B1443 ) ) ( ABC-25-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-25-RXN :gene-match ATP + putrescine[periplasmic space] + H2O =ADP + phosphate + putrescine[cytosol] h 5 PTRCORNt7pp putrescine/ornithine antiporter ( periplasm ) orn[c] + ptrc[p] <==> orn[p] + ptrc[c] B0692 TRANS-RXN-69 :gene-match H+[periplasmic space] + putrescine[periplasmic space] =H+[cytosol] + putrescine[cytosol] h orn 1 PTRCt2pp putrescine transport in via proton symport h[p] + ptrc[p] --> h[c] + ptrc[c] ( B1296 OR B0692 ) ( TRANS-RXN-69 ) TRANS-RXN-69 :gene-match H+[periplasmic space] + putrescine[periplasmic space] =H+[cytosol] + putrescine[cytosol] 2 PTRCTA Putrescine Transaminase [c] : akg + ptrc --> 4abutn + glu-L B3073 ( PUTTRANSAM-RXN ) PUTTRANSAM-RXN :gene-match putrescine + alpha-ketoglutarate = 4-amino-butyraldehyde + L-glutamate 4 PTRCtex putrescine transport via diffusion ( extracellular to periplasm ) ptrc[e] <==> ptrc[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ptrc 0 PUNP1 purine-nucleoside phosphorylase ( Adenosine ) [c] : adn + pi <==> ade + r1p B4384 ( ADENPHOSPHOR-RXN ) ADENPHOSPHOR-RXN :gene-match ribose-1-phosphate + adenine = adenosine + phosphate 4 PUNP2 purine-nucleoside phosphorylase ( Deoxyadenosine ) [c] : dad-2 + pi <==> 2dr1p + ade B4384 ( DEOXYADENPHOSPHOR-RXN ) DEOXYADENPHOSPHOR-RXN :gene-match deoxyadenosine + phosphate = adenine + deoxyribose-1-phosphate 4 PUNP3 purine-nucleoside phosphorylase ( Guanosine ) [c] : gsn + pi <==> gua + r1p ( B2407 OR B4384 ) ( GUANPHOSPHOR-RXN ) GUANPHOSPHOR-RXN :gene-match phosphate + guanosine = ribose-1-phosphate + guanine 4 PUNP4 purine-nucleoside phosphorylase ( Deoxyguanosine ) [c] : dgsn + pi <==> 2dr1p + gua ( B2407 OR B4384 ) ( DEOXYGUANPHOSPHOR-RXN ) DEOXYGUANPHOSPHOR-RXN :gene-match guanine + deoxyribose-1-phosphate = deoxyguanosine + phosphate 4 PUNP5 purine-nucleoside phosphorylase ( Inosine ) [c] : ins + pi <==> hxan + r1p ( B2407 OR B4384 ) ( INOPHOSPHOR-RXN ) INOPHOSPHOR-RXN :gene-match inosine + phosphate = ribose-1-phosphate + hypoxanthine 4 PUNP6 purine-nucleoside phosphorylase ( Deoxyinosine ) [c] : din + pi <==> 2dr1p + hxan ( B2407 OR B4384 ) ( DEOXYINOPHOSPHOR-RXN ) DEOXYINOPHOSPHOR-RXN :gene-match hypoxanthine + deoxyribose-1-phosphate = deoxyinosine + phosphate 4 PUNP7 purine-nucleoside phosphorylase ( Xanthosine ) [c] : pi + xtsn <==> r1p + xan B2407 ( XANTHOSINEPHOSPHORY-RXN ) XANTHOSINEPHOSPHORY-RXN :gene-match xanthosine + phosphate = ribose-1-phosphate + xanthine 4 PYAM5PO pyridoxamine 5'-phosphate oxidase [c] : h2o + o2 + pyam5p --> h2o2 + nh4 + pydx5p B1638 ( PMPOXI-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) PMPOXI-RXN :gene-match O2 + H2O + pyridoxamine 5'-phosphate = H2O2 + ammonia + pyridoxal 5'-phosphate AMMONIA nh4 5 PYDAMK pyridoxamine kinase [c] : atp + pydam --> adp + h + pyam5p B2418 ( PYRAMKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PYRAMKIN-RXN :gene-match ATP + pyridoxamine = ADP + pyridoxamine 5'-phosphate h 4 PYDXK pyridoxal kinase [c] : atp + pydx --> adp + h + pydx5p ( B2418 OR B1636 ) ( PYRIDOXKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PYRIDOXKIN-RXN :gene-match ATP + pyridoxal -> ADP + pyridoxal 5'-phosphate h 4 PYDXNK pyridoxine kinase [c] : atp + pydxn --> adp + h + pdx5p B2418 ( PNKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) PNKIN-RXN :gene-match ATP + pyridoxine -> ADP + pyridoxine-5'-phosphate h 4 PYK pyruvate kinase [c] : adp + h + pep --> atp + pyr ( B1854 OR B1676 ) ( PEPDEPHOS-RXN ) ( ( LEFT REMOVE PROTON ) ) PEPDEPHOS-RXN :gene-match pyruvate + ATP = ADP + phosphoenolpyruvate h 4 PYNP2r pyrimidine-nucleoside phosphorylase ( uracil ) [c] : pi + uri <==> r1p + ura B3831 ( URPHOS-RXN ) URPHOS-RXN :gene-match phosphate + uridine = ribose-1-phosphate + uracil 4 PYRtex pyruvate transport via diffusion ( extracellular to periplasm ) pyr[e] <==> pyr[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da pyr 0 QMO2 quinol monooxygenase ( Ubiquinol-8 ) [c] : ( 2 ) o2 + q8h2 --> ( 2 ) h + ( 2 ) o2s + q8 B3029 RXN0-3441 :gene-match menadiol + 2 O2 -> menadione + 2 O2- CPD-3766, MENADIOL h, q8h2, q8 2 QMO3 quinol monooxygenase ( menaquinol 8 ) [c] : mql8 + ( 2 ) o2 --> ( 2 ) h + mqn8 + ( 2 ) o2s B3029 RXN0-3441 :gene-match menadiol + 2 O2 -> menadione + 2 O2- CPD-3766, MENADIOL mqn8, h, mql8 2 QULNS quinolinate synthase [c] : dhap + iasp --> ( 2 ) h2o + pi + quln B0750 ( QUINOLINATE-SYNTHA-RXN ) QUINOLINATE-SYNTHA-RXN :gene-match iminoaspartate + dihydroxy-acetone-phosphate -> quinolinate + 2 H2O + phosphate 5 R15BPK "ribose-1,5-bisphosphokinase" [c] : atp + r15bp --> adp + prpp B4094 ( RXN0-1401 ) RXN0-1401 :gene-match ribose-1,5-bisphosphate + ATP = 5-phosphoribosyl 1-pyrophosphate + ADP 4 R5PP ribose 5-phosphate phosphatase [c] : h2o + r5p --> pi + rib-D B0822 ( SUGAR-PHOSPHATASE-RXN ) ( :EXPANDED-RXN-MATCH ) SUGAR-PHOSPHATASE-RXN :gene-match H2O + a sugar phosphate = a sugar + phosphate Sugar-Phosphate, Sugar rib-D, r5p 2 R5PPpp ribose 5-phosphate phosphatase [p] : h2o + r5p --> pi + rib-D B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters rib-D, r5p 2 R5Ptex Ribose 5-phosphate transport via diffusion ( extracellular to periplasm ) r5p[e] <==> r5p[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da r5p 0 RBFK riboflavin kinase [c] : atp + ribflv --> adp + fmn + h B0025 ( RIBOFLAVINKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) RIBOFLAVINKIN-RXN :gene-match riboflavin + ATP = FMN + ADP h 4 RBFSa riboflavin synthase [c] : 4r5au + db4p --> dmlz + ( 2 ) h2o + pi B1662 ( LUMAZINESYN-RXN ) RIBOFLAVIN-SYN-RXN :gene-match 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione + riboflavin ribflv h2o, pi, db4p 2 RBFSb riboflavin synthase [c] : ( 2 ) dmlz --> 4r5au + ribflv B0415 ( RIBOFLAVIN-SYN-RXN ) LUMAZINESYN-RXN :gene-match 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione + 3,4-dihydroxy-2-butanone-4-P = 6,7-dimethyl-8-(1-D-ribityl)lumazine + phosphate + 2 H2O h2o, pi, db4p ribflv 2 RBK ribokinase [c] : atp + rib-D --> adp + h + r5p B3752 ( RIBOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) RIBOKIN-RXN :gene-match D-ribose + ATP -> D-ribose-5-phosphate + ADP h 4 RBK_L1 L-ribulokinase ( L-ribulose ) [c] : atp + rbl-L --> adp + h + ru5p-L B0063 ( RXN0-5116 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-5116 :gene-match L-ribulose + ATP -> L-ribulose-5-phosphate + ADP h 4 RBP4E L-ribulose-phosphate 4-epimerase [c] : ru5p-L <==> xu5p-D ( B0061 OR B4198 OR B3583 ) ( RIBULPEPIM-RXN ) RIBULPEPIM-RXN :gene-match L-ribulose-5-phosphate = D-xylulose-5-phosphate 2 RHAT1 rhamnosyltransferase I ( LPS core biosynthesis ) [c] : dtdprmn + kphphhlipa --> dtdp + h + icolipa B3629 ( :UNMAPPED-CPDS ) RXN0-5129 :gene-match a lipopolysaccharide + TDP-rhamnose = rhamnosyl-lipopolysaccharide + dTDP CPD0-943, Lipopolysaccharides, CPD0-944 dtdprmn, h, icolipa, kphphhlipa 1 RIBabcpp D-ribose transport via ABC system ( periplasm ) atp[c] + h2o[c] + rib-D[p] --> adp[c] + h[c] + pi[c] + rib-D[c] ( ( B4231 AND B4227 AND B4485 AND B4230 ) OR ( B3749 AND B3751 AND B3750 AND B3748 ) OR ( B4087 AND B4088 AND B4086 ) ) ( ABC-28-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-28-RXN :gene-match ATP + D-ribose[periplasmic space] + H2O =ADP + phosphate + D-ribose[cytosol] h 5 RIBtex ribose transport via diffusion ( extracellular to periplasm ) rib-D[e] <==> rib-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da rib-D 0 RMI L-rhamnose isomerase [c] : rmn <==> rml B3903 ( RHAMNISOM-RXN ) RHAMNISOM-RXN :gene-match L-rhamnose = rhamnulose 2 RMK rhamnulokinase [c] : atp + rml --> adp + h + rml1p B3904 ( RHAMNULOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) RHAMNULOKIN-RXN :gene-match rhamnulose + ATP -> rhamnulose-1-phosphate + ADP h 4 RMNtex L-rhamnose transport via diffusion ( extracellular to periplasm ) rmn[e] <==> rmn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da rmn 0 RMNtpp L-rhamnose transport via proton symport ( periplasm ) h[p] + rmn[p] --> h[c] + rmn[c] B3907 ( TRANS-RXN-112 ) TRANS-RXN-112 :gene-match H+[periplasmic space] + L-rhamnose[periplasmic space] =H+[cytosol] + L-rhamnose[cytosol] 2 RMPA Rhamnulose-1-phosphate aldolase [c] : rml1p <==> dhap + lald-L B3902 ( RHAMNULPALDOL-RXN ) RHAMNULPALDOL-RXN :gene-match rhamnulose-1-phosphate = lactaldehyde + dihydroxy-acetone-phosphate 3 RNDR1 ribonucleoside-diphosphate reductase ( ADP ) [c] : adp + trdrd --> dadp + h2o + trdox ( ( ( B2234 AND B2235 ) AND B2582 ) OR ( ( B2234 AND B2235 ) AND B3781 ) ) ( ADPREDUCT-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN ) ( :EXPANDED-RXN-MATCH ) ADPREDUCT-RXN :gene-match dADP + a thioredoxin disulfide + H2O = ADP + a reduced thioredoxin Red-Thioredoxin, Ox-Thioredoxin trdrd, trdox 3 RNDR1b ribonucleoside-diphosphate reductase ( ADP ) ( glutaredoxin ) [c] : adp + grxrd --> dadp + grxox + h2o ( ( B1064 AND ( B2675 AND B2676 ) ) OR ( B3610 AND ( B2675 AND B2676 ) ) OR ( B1654 AND ( B2675 AND B2676 ) ) OR ( B0849 AND ( B2675 AND B2676 ) ) ) ( RXN0-747 ) ( :EXPANDED-RXN-MATCH ) RXN0-747 :gene-match ADP + a reduced glutaredoxin 1 = dADP + an oxidized glutaredoxin 1 + H2O GLUTAREDOXIN-1-OXIDIZED grxox 4 RNDR2 ribonucleoside-diphosphate reductase ( GDP ) [c] : gdp + trdrd --> dgdp + h2o + trdox ( ( ( B2234 AND B2235 ) AND B3781 ) OR ( ( B2234 AND B2235 ) AND B2582 ) ) ( GDPREDUCT-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN ) ( :EXPANDED-RXN-MATCH ) GDPREDUCT-RXN :gene-match dGDP + a thioredoxin disulfide + H2O = GDP + a reduced thioredoxin Red-Thioredoxin, Ox-Thioredoxin trdrd, trdox 3 RNDR2b ribonucleoside-diphosphate reductase ( GDP ) ( glutaredoxin ) [c] : gdp + grxrd --> dgdp + grxox + h2o ( ( B0849 AND ( B2675 AND B2676 ) ) OR ( B3610 AND ( B2675 AND B2676 ) ) OR ( B1064 AND ( B2675 AND B2676 ) ) OR ( B1654 AND ( B2675 AND B2676 ) ) ) ( RXN0-748 ) ( :EXPANDED-RXN-MATCH ) RXN0-748 :gene-match GDP + a reduced glutaredoxin 1 = dGDP + an oxidized glutaredoxin 1 + H2O GLUTAREDOXIN-1-OXIDIZED grxox 4 RNDR3 ribonucleoside-diphosphate reductase ( CDP ) [c] : cdp + trdrd --> dcdp + h2o + trdox ( ( ( B2234 AND B2235 ) AND B3781 ) OR ( ( B2234 AND B2235 ) AND B2582 ) ) ( RIBONUCLEOSIDE-DIP-REDUCTI-RXN CDPREDUCT-RXN ) ( :EXPANDED-RXN-MATCH ) CDPREDUCT-RXN :gene-match dCDP + a thioredoxin disulfide + H2O = CDP + a reduced thioredoxin Red-Thioredoxin, Ox-Thioredoxin trdrd, trdox 3 RNDR3b ribonucleoside-diphosphate reductase ( CDP ) ( glutaredoxin ) [c] : cdp + grxrd --> dcdp + grxox + h2o ( ( B0849 AND ( B2675 AND B2676 ) ) OR ( B3610 AND ( B2675 AND B2676 ) ) OR ( B1654 AND ( B2675 AND B2676 ) ) OR ( B1064 AND ( B2675 AND B2676 ) ) ) ( RIBONUCLEOSIDE-DIP-REDUCTII-RXN ) ( :EXPANDED-RXN-MATCH ) RIBONUCLEOSIDE-DIP-REDUCTII-RXN :gene-match CDP + a reduced glutaredoxin 1 = dCDP + an oxidized glutaredoxin 1 + H2O GLUTAREDOXIN-1-OXIDIZED grxox 4 RNDR4 ribonucleoside-diphosphate reductase ( UDP ) [c] : trdrd + udp --> dudp + h2o + trdox ( ( ( B2234 AND B2235 ) AND B3781 ) OR ( ( B2234 AND B2235 ) AND B2582 ) ) ( RIBONUCLEOSIDE-DIP-REDUCTI-RXN UDPREDUCT-RXN ) ( :EXPANDED-RXN-MATCH ) UDPREDUCT-RXN :gene-match dUDP + a thioredoxin disulfide + H2O = UDP + a reduced thioredoxin Red-Thioredoxin, Ox-Thioredoxin trdrd, trdox 3 RNDR4b ribonucleoside-diphosphate reductase ( UDP ) ( glutaredoxin ) [c] : grxrd + udp --> dudp + grxox + h2o ( ( B0849 AND ( B2675 AND B2676 ) ) OR ( B1064 AND ( B2675 AND B2676 ) ) OR ( B3610 AND ( B2675 AND B2676 ) ) OR ( B1654 AND ( B2675 AND B2676 ) ) ) ( RXN0-722 ) ( :EXPANDED-RXN-MATCH ) RXN0-722 :gene-match UDP + a reduced glutaredoxin 1 = dUDP + an oxidized glutaredoxin 1 + H2O GLUTAREDOXIN-1-OXIDIZED grxox 4 RNTR1c ribonucleoside-triphosphate reductase ( ATP ) ( flavodoxin ) [c] : atp + fldrd --> datp + fldox + h2o ( ( B0684 AND B4238 ) OR ( B0684 AND B3924 AND B4238 AND B4237 ) OR ( B2895 AND B3924 AND B4238 AND B4237 ) OR ( B2895 AND B4238 ) ) ( RXN0-745 ) RXN0-745 :gene-match ATP + reduced flavodoxin = dATP + oxidized flavodoxin + H2O 5 RNTR2c ribonucleoside-triphosphate reductase ( GTP ) ( flavodoxin ) [c] : fldrd + gtp --> dgtp + fldox + h2o ( ( B0684 AND B3924 AND B4238 AND B4237 ) OR ( B0684 AND B4238 ) OR ( B2895 AND B4238 ) OR ( B2895 AND B3924 AND B4238 AND B4237 ) ) ( RXN0-746 ) RXN0-746 :gene-match GTP + reduced flavodoxin = dGTP + oxidized flavodoxin + H2O 5 RNTR3c ribonucleoside-triphosphate reductase ( CTP ) ( flavodoxin ) [c] : ctp + fldrd --> dctp + fldox + h2o ( ( B0684 AND B4238 ) OR ( B2895 AND B3924 AND B4238 AND B4237 ) OR ( B2895 AND B4238 ) OR ( B0684 AND B3924 AND B4238 AND B4237 ) ) ( RXN0-723 ) RXN0-723 :gene-match CTP + reduced flavodoxin = dCTP + oxidized flavodoxin + H2O 5 RNTR4c ribonucleoside-triphosphate reductase ( UTP ) ( flavodoxin ) [c] : fldrd + utp --> dutp + fldox + h2o ( ( B0684 AND B4238 ) OR ( B2895 AND B3924 AND B4238 AND B4237 ) OR ( B0684 AND B3924 AND B4238 AND B4237 ) OR ( B2895 AND B4238 ) ) ( RXN0-724 ) RXN0-724 :gene-match UTP + reduced flavodoxin = dUTP + oxidized flavodoxin + H2O 5 RPE ribulose 5-phosphate 3-epimerase [c] : ru5p-D <==> xu5p-D ( B3386 OR B4301 ) ( RIBULP3EPIM-RXN ) RIBULP3EPIM-RXN :gene-match D-ribulose-5-phosphate = D-xylulose-5-phosphate 2 RPI ribose-5-phosphate isomerase [c] : r5p <==> ru5p-D ( B2914 OR B4090 ) ( RIB5PISOM-RXN ) RIB5PISOM-RXN :gene-match D-ribose-5-phosphate = D-ribulose-5-phosphate 2 RZ5PP alpha-ribazole 5-phosphate phosphatase [c] : 5prdmbz + h2o --> pi + rdmbzi B0638 ( RIBAZOLEPHOSPHAT-RXN ) RIBAZOLEPHOSPHAT-RXN :gene-match alpha-ribazole-5'-P + H2O = alpha-ribazole + phosphate 4 S7PI sedoheptulose 7-phosphate isomerase [c] : s7p --> gmhep7p B0222 ( RXN0-4301 ) RXN0-4301 :gene-match D-sedoheptulose-7-phosphate = D-alpha,beta-D-heptose-7-phosphate 2 SADH Succinylarginine dihydrolase [c] : ( 2 ) h + ( 2 ) h2o + sucarg --> co2 + ( 2 ) nh4 + sucorn B1745 ( SUCCARGDIHYDRO-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) SUCCARGDIHYDRO-RXN :gene-match N2-succinyl-L-arginine + 2 H2O = N2-succinyl-L-ornithine + 2 ammonia + CO2 AMMONIA h, nh4 4 SADT2 Sulfate adenyltransferase [c] : atp + gtp + h2o + so4 --> aps + gdp + pi + ppi ( B2751 AND B2752 ) SULFATE-ADENYLYLTRANS-RXN :gene-match sulfate + ATP = APS + diphosphate gdp, gtp, h2o, pi 4 SARCOX sarcosine oxidase [c] : h2o + o2 + sarcs --> fald + gly + h2o2 B1059 ( SARCOX-RXN ) ( :METACYC ) N-METHYL-L-AMINO-ACID-OXIDASE-RXN :gene-match O2 + H2O + a N-methyl-L-amino acid = H2O2 + formaldehyde + an amino acid N-Methyl-L-Amino-Acids, Amino-Acid gly, sarcs 4 SBTPD sorbitol-6-phosphate dehydrogenase [c] : nad + sbt6p <==> f6p + h + nadh B2705 ( SORB6PDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) SORB6PDEHYDROG-RXN :gene-match D-sorbitol-6-phosphate + NAD+ = D-fructose-6-phosphate + NADH h 4 SBTptspp D-sorbitol transport via PEP:Pyr PTS ( periplasm ) pep[c] + sbt-D[p] --> pyr[c] + sbt6p[c] ( B2415 AND B2416 AND B2702 AND B2704 AND B2703 ) ( TRANS-RXN-169 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate 4 SBTtex D-sorbitol transport via diffusion ( extracellular to periplasm ) sbt-D[e] <==> sbt-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da sbt-D 0 SDPDS succinyl-diaminopimelate desuccinylase [c] : h2o + sl26da --> 26dap-LL + succ B2472 ( SUCCDIAMINOPIMDESUCC-RXN ) SUCCDIAMINOPIMDESUCC-RXN :gene-match H2O + N-succinyl-L,L-2,6-diaminopimelate = L,L-diaminopimelate + succinate 4 SDPTA succinyldiaminopimelate transaminase [c] : akg + sl26da <==> glu-L + sl2a6o B3359 ( SUCCINYLDIAMINOPIMTRANS-RXN ) SUCCINYLDIAMINOPIMTRANS-RXN :gene-match alpha-ketoglutarate + N-succinyl-L,L-2,6-diaminopimelate = L-glutamate + N-succinyl-2-amino-6-ketopimelate 4 SELCYSS selenocysteine synthase [c] : selnp + sertrna( sec ) --> h + pi + sectrna B3591 2.9.1.1-RXN :gene-match selenophosphate + L-seryl-tRNAsec = phosphate + H2O + L-selenocysteinyl-tRNAsec sertrna(sec), h2o h, sertrna( sec ) 3 SELNPS Selenophosphate synthase [c] : atp + h2o + seln --> amp + pi + selnp B1764 ( 2.7.9.3-RXN ) 2.7.9.3-RXN :gene-match H2O + selenide + ATP = phosphate + selenophosphate + AMP 6 SERASr ( L-seryl )adenylate synthase [c] : atp + h + ser-L <==> ppi + seramp B0586 ( ENTF-RXN ) ( ( LEFT REMOVE PROTON ) ) ENTF-RXN :gene-match ATP + L-serine = diphosphate + L-Seryl-AMP h 4 SERAT serine O-acetyltransferase [c] : accoa + ser-L <==> acser + coa B3607 ( SERINE-O-ACETTRAN-RXN ) SERINE-O-ACETTRAN-RXN :gene-match L-serine + acetyl-CoA = O-acetyl-L-serine + coenzyme A 4 SERD_D D-serine deaminase [c] : ser-D --> nh4 + pyr B2366 ( DSERDEAM-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) DSERDEAM-RXN :gene-match D-serine = pyruvate + ammonia AMMONIA nh4 2 SERD_L L-serine deaminase [c] : ser-L --> nh4 + pyr ( B1814 OR B2797 OR B3708 OR B4471 ) ( 4.3.1.17-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) 4.3.1.17-RXN :gene-match L-serine -> pyruvate + ammonia AMMONIA nh4 2 SERt2rpp L-serine reversible transport via proton symport ( periplasm ) h[p] + ser-L[p] <==> h[c] + ser-L[c] ( B2796 OR B3116 ) ( TRANS-RXN-71 ) TRANS-RXN-71 :gene-match H+[periplasmic space] + L-serine[periplasmic space] =H+[cytosol] + L-serine[cytosol] 2 SERt4pp L-serine via sodium symport ( periplasm ) na1[p] + ser-L[p] --> na1[c] + ser-L[c] B3089 ( RXN0-4083 ) RXN0-4083 :gene-match Na+[periplasmic space] + L-serine[periplasmic space] =Na+[cytosol] + L-serine[cytosol] 2 SERtex L-serine transport via diffusion ( extracellular to periplasm ) ser-L[e] <==> ser-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ser-L 0 SERTRS Seryl-tRNA synthetase [c] : atp + ser-L + trnaser --> amp + ppi + sertrna B0893 ( SERINE--TRNA-LIGASE-RXN ) SERINE--TRNA-LIGASE-RXN :gene-match tRNAser + L-serine + ATP -> L-seryl-tRNAser + diphosphate + AMP 6 SERTRS2 Seryl-tRNA synthetase ( selenocystein ) [c] : atp + ser-L + trnasecys --> amp + ppi + sertrna( sec ) B0893 ( RXN0-2161 ) RXN0-2161 :gene-match tRNAsec + L-serine + ATP -> L-seryl-tRNAsec + diphosphate + AMP sertrna(sec) sertrna( sec ) 5 SFGTHi S-Formylglutathione hydralase [c] : Sfglutth + h2o --> for + gthrd + h ( B0355 OR B2154 ) ( S-FORMYLGLUTATHIONE-HYDROLASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) S-FORMYLGLUTATHIONE-HYDROLASE-RXN :gene-match S-formylglutathione + H2O = formate + glutathione h 4 SGDS Succinylglutamate desuccinylase [c] : h2o + sucglu --> glu-L + succ B1744 ( SUCCGLUDESUCC-RXN ) SUCCGLUDESUCC-RXN :gene-match N2-succinylglutamate + H2O = succinate + L-glutamate 4 SGSAD Succinylglutamic semialdehyde dehydrogenase [c] : h2o + nad + sucgsa --> ( 2 ) h + nadh + sucglu B1746 ( SUCCGLUALDDEHYD-RXN ) ( ( RIGHT REMOVE PROTON ) ) SUCCGLUALDDEHYD-RXN :gene-match N2-succinyl-L-glutamate 5-semialdehyde + NAD+ + H2O = N2-succinylglutamate + NADH h 5 SHCHCS2 "2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase" [c] : ichor + ssaltpp --> 2shchc + pyr + thmpp B2264 ( SHCHCSYNTH-RXN ) SHCHCSYNTH-RXN :gene-match isochorismate + succinate-semialdehyde-thiamine PPi = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate + thiamine diphosphate + pyruvate 5 SHCHD2 sirohydrochlorin dehydrogenase ( NAD ) [c] : dscl + nad --> h + nadh + scl B3368 ( DIMETHUROPORDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) DIMETHUROPORDEHYDROG-RXN :gene-match precorrin-2 + NAD+ = sirohydrochlorin + NADH h 4 SHCHF sirohydrochlorin ferrochetalase [c] : fe2 + scl --> ( 3 ) h + sheme B3368 ( SIROHEME-FERROCHELAT-RXN ) SIROHEME-FERROCHELAT-RXN :gene-match sirohydrochlorin + Fe2+ = 2 H+ + siroheme 4 SHK3Dr shikimate dehydrogenase [c] : 3dhsk + h + nadph <==> nadp + skm ( B1692 OR B3281 ) ( SHIKIMATE-5-DEHYDROGENASE-RXN ) ( ( LEFT REMOVE PROTON ) ) SHIKIMATE-5-DEHYDROGENASE-RXN :gene-match NADP+ + shikimate = NADPH + 3-dehydro-shikimate h 4 SHKK shikimate kinase [c] : atp + skm --> adp + h + skm5p ( B3390 OR B0388 ) ( SHIKIMATE-KINASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) SHIKIMATE-KINASE-RXN :gene-match shikimate + ATP = shikimate-3-phosphate + ADP h 4 SHSL1 O-succinylhomoserine lyase ( L-cysteine ) [c] : cys-L + suchms --> cyst-L + h + succ B3939 ( O-SUCCHOMOSERLYASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) O-SUCCHOMOSERLYASE-RXN :gene-match L-cysteine + O-succinyl-L-homoserine = succinate + cystathionine h 4 SKMt2pp shikimate transport in via proton symport ( periplasm ) h[p] + skm[p] --> h[c] + skm[c] B1981 ( TRANS-RXN-27 ) TRANS-RXN-27 :gene-match H+[periplasmic space] + shikimate[periplasmic space] =H+[cytosol] + shikimate[cytosol] 2 SKMtex shikimate transport via diffusion ( extracellular to periplasm ) skm[e] <==> skm[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da skm 0 SO2tex SO2 transport via diffusion ( extracellular to periplasm ) so2[e] <==> so2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da so2 0 SO3tex sulfite transport via diffusion ( extracellular to periplasm ) so3[e] <==> so3[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da so3 0 SO4tex sulfate transport via diffusion ( extracellular to periplasm ) so4[e] <==> so4[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da so4 0 SOTA Succinylornithine transaminase [c] : akg + sucorn --> glu-L + sucgsa B1748 ( SUCCORNTRANSAM-RXN ) SUCCORNTRANSAM-RXN :gene-match N2-succinyl-L-ornithine + alpha-ketoglutarate = N2-succinyl-L-glutamate 5-semialdehyde + L-glutamate 4 SPMDabcpp spermidine transport via ABC system ( periplasm ) atp[c] + h2o[c] + spmd[p] --> adp[c] + h[c] + pi[c] + spmd[c] ( ( B1440 AND B1441 AND B1442 AND B1443 ) OR ( B1126 AND B1125 AND B1124 AND B1123 ) ) ( ABC-24-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-24-RXN :gene-match ATP + spermidine[periplasmic space] + H2O =ADP + phosphate + spermidine[cytosol] h 5 SPMDAT1 Spermidine acetyltransferase [c] : accoa + spmd --> N1aspmd + coa + h B1584 ( DIAMACTRANS-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) SPERMACTRAN-RXN :gene-match acetyl-CoA + spermidine = coenzyme A + an N-acetylspermidine N-ACETYLSPERMIDINE N1aspmd, h 3 SPMDAT2 Spermidine acetyltransferase ( N8 ) [c] : accoa + spmd --> coa + h + n8aspmd B1584 ( DIAMACTRANS-RXN ) ( :METACYC :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) SPERMACTRAN-RXN :gene-match acetyl-CoA + spermidine = coenzyme A + an N-acetylspermidine N-ACETYLSPERMIDINE h, n8aspmd 3 SPMDtex spermidine transport via diffusion ( extracellular to periplasm ) spmd[e] <==> spmd[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da spmd 0 SPMS spermidine synthase [c] : ametam + ptrc --> 5mta + h + spmd B0121 ( SPERMIDINESYN-RXN ) ( ( RIGHT REMOVE PROTON ) ) SPERMIDINESYN-RXN :gene-match putrescine + S-adenosyl-L-methioninamine = spermidine + 5'-methylthioadenosine h 4 SPODM superoxide dismutase [c] : ( 2 ) h + ( 2 ) o2s --> h2o2 + o2 ( B3908 OR B1656 ) ( SUPEROX-DISMUT-RXN ) SUPEROX-DISMUT-RXN :gene-match 2 H+ + 2 O2- = H2O2 + O2 4 SPODMpp superoxide dismutase [p] : ( 2 ) h + ( 2 ) o2s --> h2o2 + o2 B1646 SUPEROX-DISMUT-RXN :gene-match 2 H+ + 2 O2- = H2O2 + O2 4 SSALy succinate-semialdehyde dehydrogenase ( NADP ) [c] : h2o + nadp + sucsal --> ( 2 ) h + nadph + succ B2661 ( SUCCSEMIALDDEHYDROG-RXN ) ( ( RIGHT REMOVE PROTON ) ) SUCCSEMIALDDEHYDROG-RXN :gene-match succinate semialdehyde + NADP+ + H2O = NADPH + succinate h 5 SUCBZL o-succinylbenzoate-CoA ligase [c] : atp + coa + sucbz --> amp + ppi + sbzcoa B2260 ( O-SUCCINYLBENZOATE-COA-LIG-RXN ) O-SUCCINYLBENZOATE-COA-LIG-RXN :gene-match ATP + O-succinylbenzoate + coenzyme A = AMP + diphosphate + O-succinylbenzoyl-CoA 6 SUCBZS O-succinylbenzoate-CoA synthase [c] : 2shchc --> h2o + sucbz B2261 ( O-SUCCINYLBENZOATE-COA-SYN-RXN ) O-SUCCINYLBENZOATE-COA-SYN-RXN :gene-match 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate = O-succinylbenzoate + H2O 3 SUCCt2_2pp succinate transport via proton symport ( 2 H ) ( periplasm ) ( 2 ) h[p] + succ[p] --> ( 2 ) h[c] + succ[c] B3528 ( TRANS-RXN-121 ) TRANS-RXN-121 :gene-match Na+[periplasmic space] + succinate[periplasmic space] =Na+[cytosol] + succinate[cytosol] na1 h 1 SUCCt2_3pp Succintate transport via proton symport ( 3 H ) ( periplasm ) ( 3 ) h[p] + succ[p] --> ( 3 ) h[c] + succ[c] ( B4123 OR B4138 ) ( TRANS-RXN-121 ) TRANS-RXN-106C :gene-match a C4-dicarboxylate[periplasmic space] + succinate[cytosol] =succinate[periplasmic space] + a C4-dicarboxylate[cytosol] C4-dicarboxylates h 1 SUCCtex succinate transport via diffusion ( extracellular to periplasm ) succ[e] <==> succ[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da succ 0 SUCDi succinate dehydrogenase ( irreversible ) [c] : q8 + succ --> fum + q8h2 ( B0721 AND B0722 AND B0723 AND B0724 ) ( |SUCCINATE-DEHYDROGENASE-( UBIQUINONE )-RXN| ) ( :EXPANDED-RXN-MATCH ) SUCCINATE-DEHYDROGENASE-(UBIQUINONE)-RXN :gene-match a ubiquinone + succinate = a ubiquinol + fumarate Ubiquinones, Ubiquinols q8, q8h2 2 SUCFUMtpp succinate:fumarate antiporter ( periplasm ) fum[p] + succ[c] <==> fum[c] + succ[p] ( B4138 OR B4123 OR B0621 ) ( TRANS-RXN-202A ) TRANS-RXN-202A :gene-match succinate[cytosol] + fumarate[periplasmic space] =fumarate[cytosol] + succinate[periplasmic space] 2 SUCOAS succinyl-CoA synthetase ( ADP-forming ) [c] : atp + coa + succ <==> adp + pi + succoa ( B0728 AND B0729 ) ( SUCCCOASYN-RXN ) SUCCCOASYN-RXN :gene-match succinate + coenzyme A + ATP = succinyl-CoA + ADP + phosphate 6 SUCptspp sucrose transport via PEP:Pyr ( periplasm ) pep[c] + sucr[p] --> pyr[c] + suc6p[c] ( B2417 AND B2429 AND B2415 AND B2416 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate sbt6p, sbt-D sucr, suc6p 2 SUCRtex sucrose transport transport via diffusion ( extracellular to periplasm ) sucr[e] <==> sucr[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da sucr 0 SULabcpp sulfate transport via ABC system ( periplasm ) atp[c] + h2o[c] + so4[p] --> adp[c] + h[c] + pi[c] + so4[c] ( ( B2422 AND B2425 AND B2424 AND B2423 ) OR ( B2422 AND B2424 AND B2423 AND B2413 AND B3917 ) ) ( ABC-70-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-70-RXN :gene-match sulfate[periplasmic space] + H2O + ATP =sulfate[cytosol] + phosphate + ADP h 5 SULFACtex sulfoaceate transport via diffusion ( extracellular to periplasm ) sulfac[e] <==> sulfac[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da sulfac 0 SULR sulfite reductase ( NADPH2 ) [c] : ( 3 ) h2o + h2s + ( 3 ) nadp <==> ( 5 ) h + ( 3 ) nadph + so3 ( B2763 AND B2764 ) ( SULFITE-REDUCT-RXN ) ( ( RIGHT REMOVE PROTON ) ) SULFITE-REDUCT-RXN :gene-match 3 H2O + 3 NADP+ + hydrogen sulfide = 3 NADPH + sulfite h 5 T2DECAI trans-2-decenoyl-ACP isomerase [c] : tdec2eACP <==> cdec3eACP B0954 ( TRANS-2-DECENOYL-ACP-ISOM-RXN ) TRANS-2-DECENOYL-ACP-ISOM-RXN :gene-match trans-delta2-decenoyl-ACP = cis-delta3-decenoyl-ACP 2 TAGURr tagaturonate reductase [c] : altrn + nad <==> h + nadh + tagur B1521 ( ALTRO-OXIDOREDUCT-RXN ) ( ( RIGHT REMOVE PROTON ) ) ALTRO-OXIDOREDUCT-RXN :gene-match NAD+ + D-altronate = NADH + D-tagaturonate h 4 TALA transaldolase [c] : g3p + s7p <==> e4p + f6p ( B2464 OR B0008 ) ( TRANSALDOL-RXN ) TRANSALDOL-RXN :gene-match D-glyceraldehyde-3-phosphate + D-sedoheptulose-7-phosphate = D-fructose-6-phosphate + D-erythrose-4-phosphate 4 TARTD L( + )-tartrate dehydratase [c] : tartr-L --> h2o + oaa ( B3061 AND B3062 ) ( LTARTDEHYDRA-RXN ) LTARTDEHYDRA-RXN :gene-match tartrate = oxaloacetate + H2O 3 TARTRt7pp Tartrate/succinate antiporter ( periplasm ) succ[c] + tartr-L[p] <==> succ[p] + tartr-L[c] B3063 ( TRANS-RXN-127 ) TRANS-RXN-127 :gene-match tartrate[periplasmic space] + succinate[cytosol] =tartrate[cytosol] + succinate[periplasmic space] 2 TARTRtex Tartrate transport via diffusion ( extracellular to periplasm ) tartr-L[e] <==> tartr-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tartr-L 0 TAUDO Taurine dioxygenase [c] : akg + o2 + taur --> aacald + co2 + h + so3 + succ B0368 ( RXN0-299 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-299 :gene-match taurine + alpha-ketoglutarate + O2 = aminoacetaldehyde + sulfite + succinate + CO2 h 7 TAURabcpp taurine transport via ABC system ( periplasm ) atp[c] + h2o[c] + taur[p] --> adp[c] + h[c] + pi[c] + taur[c] ( B0365 AND B0366 AND B0367 ) ( ABC-64-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-64-RXN :gene-match taurine[periplasmic space] + ATP + H2O =taurine[cytosol] + ADP + phosphate h 5 TAURtex taurine transport via diffusion ( extracellular to periplasm ) taur[e] <==> taur[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da taur 0 TCYNTtex Thiocyanate transport via diffusion ( extracellular to periplasm ) tcynt[e] <==> tcynt[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tcynt 0 TDECOAI tetradecenoyl-coa cis-trans isomerization [c] : tdecoa --> td2coa B3846 ENOYL-COA-DELTA-ISOM-RXN :gene-match a cis-3-enoyl-CoA = a trans-2-enoyl-CoA CIS-DELTA3-ENOYL-COA tdecoa 1 TDP thiamin pyrophosphatase [c] : h2o + thmpp --> h + pi + thmmp B1134 ( RXN0-3542 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-3542 :gene-match thiamine diphosphate + H2O -> thiamine-phosphate + phosphate h 4 TDPADGAT "dTDP-4-amino-4,6-dideoxy-D-glucose acetyltransferase" [c] : accoa + dtdp4addg --> coa + dtdp4aaddg + h B3790 ( TDPFUCACTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) TDPFUCACTRANS-RXN :gene-match dTDP-D-fucosamine + acetyl-CoA = dTDP-4-acetamido-4,6-dideoxy-D-galactose + coenzyme A h 4 TDPAGTA "dTDP-4-amino-4,6-dideoxy-D-glucose transaminase" [c] : dtdp4d6dg + glu-L --> akg + dtdp4addg B3791 ( RFFTRANS-RXN ) RFFTRANS-RXN :gene-match dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = dTDP-D-fucosamine + alpha-ketoglutarate 4 TDPDRE "dTDP-4-dehydrorhamnose 3,5-epimerase" [c] : dtdp4d6dg --> dtdp4d6dm B2038 ( DTDPDEHYDRHAMEPIM-RXN ) DTDPDEHYDRHAMEPIM-RXN :gene-match dTDP-4-dehydro-6-deoxy-D-glucose = dTDP-4-dehydro-6-deoxy-L-mannose 2 TDPDRR dTDP-4-dehydrorhamnose reductase [c] : dtdp4d6dm + h + nadph --> dtdprmn + nadp B2040 ( DTDPDEHYRHAMREDUCT-RXN ) ( ( LEFT REMOVE PROTON ) ) DTDPDEHYRHAMREDUCT-RXN :gene-match NADP+ + dTDP-alpha-L-rhamnose = NADPH + dTDP-4-dehydro-6-deoxy-L-mannose h 4 TDPGDH "dTDPglucose 4,6-dehydratase" [c] : dtdpglu --> dtdp4d6dg + h2o ( B2041 OR B3788 ) ( DTDPGLUCDEHYDRAT-RXN ) DTDPGLUCDEHYDRAT-RXN :gene-match dTDP-D-glucose = H2O + dTDP-4-dehydro-6-deoxy-D-glucose 3 TDSK Tetraacyldisaccharide 4'kinase [c] : atp + lipidAds --> adp + h + lipidA B0915 ( TETRAACYLDISACC4KIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) TETRAACYLDISACC4KIN-RXN :gene-match lipid A disaccharide + ATP = lipid IVA + ADP h 4 TDSR1 thiol:disulfide reductase ( DsbC ) dsbcox[p] + dsbdrd[c] --> dsbcrd[p] + dsbdox[c] ( B2893 AND B4136 ) ( :UNMAPPED-CPDS ) DSBDC-RXN :gene-match DsbDreduced + DsbCoxidized = DsbDoxidized + DsbCreduced 4 TDSR2 thiol:disulfide reductase ( DsbG ) dsbdrd[c] + dsbgox[p] --> dsbdox[c] + dsbgrd[p] ( B4136 AND B0604 ) ( :UNMAPPED-CPDS ) DSBD-RXN :gene-match DsbGoxidized + DsbDreduced = DsbGreduced + DsbDoxidized 4 TGBPA Tagatose-bisphosphate aldolase [c] : tagdp-D <==> dhap + g3p ( ( B3132 AND B3137 ) OR ( B2095 AND B2096 ) ) ( TAGAALDOL-RXN ) TAGAALDOL-RXN :gene-match tagatose-1,6-bisphosphate = dihydroxy-acetone-phosphate + D-glyceraldehyde-3-phosphate 3 THD2pp NAD( P ) transhydrogenase ( periplasm ) ( 2 ) h[p] + nadh[c] + nadp[c] --> ( 2 ) h[c] + nad[c] + nadph[c] ( B1602 AND B1603 ) ( 1.6.1.2-RXN PYRNUTRANSHYDROGEN-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT REMOVE PROTON ) ) 1.6.1.2-RXN :gene-match NAD+ + NADPH = NADH + NADP+ h 4 THDPS tetrahydrodipicolinate succinylase [c] : h2o + succoa + thdp --> coa + sl2a6o B0166 ( TETHYDPICSUCC-RXN ) TETHYDPICSUCC-RXN :gene-match H2O + tetrahydrodipicolinate + succinyl-CoA = N-succinyl-2-amino-6-ketopimelate + coenzyme A 5 THIORDXi hydrogen peroxide reductase ( thioredoxin ) [c] : h2o2 + trdrd --> ( 2 ) h2o + trdox ( ( B2480 AND B3781 ) OR ( B2480 AND B2582 ) ) ( RXN0-267 ) ( :EXPANDED-RXN-MATCH ) RXN0-267 :gene-match a reduced thioredoxin + H2O2 = a thioredoxin disulfide + H2O Red-Thioredoxin, Ox-Thioredoxin trdrd, trdox 2 THMabcpp thiamine transport via ABC system ( periplasm ) atp[c] + h2o[c] + thm[p] --> adp[c] + h[c] + pi[c] + thm[c] ( B0068 AND B0067 AND B0066 ) ( ABC-32-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-32-RXN :gene-match ATP + thiamine[periplasmic space] + H2O =ADP + phosphate + thiamine[cytosol] h 5 THMDt2pp thymidine transport in via proton symport ( periplasm ) h[p] + thymd[p] --> h[c] + thymd[c] ( B2393 OR B2964 ) ( TRANS-RXN-108H ) TRANS-RXN-108H :gene-match H+[periplasmic space] + thymidine[periplasmic space] =H+[cytosol] + thymidine[cytosol] 2 THMDt2rpp "thymidine transport in via proton symport, reversible ( periplasm )" h[p] + thymd[p] <==> h[c] + thymd[c] B2406 ( TRANS-RXN-108H ) TRANS-RXN-31 :gene-match H+[periplasmic space] + xanthosine[periplasmic space] =H+[cytosol] + xanthosine[cytosol] xtsn thymd 1 THMDtex thymidine transport via diffusion ( extracellular to periplasm ) thymd[e] <==> thymd[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da thymd 0 THMtex Thiamine transport via diffusion ( extracellular to periplasm ) thm[e] <==> thm[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da thm 0 THRA2i L-allo-Threonine Aldolase [c] : athr-L --> acald + gly ( B2551 OR B0870 ) ( LTAA-RXN ) LTAA-RXN :gene-match L-allo-threonine = glycine + acetaldehyde 3 THRabcpp L-threonine transport via ABC system ( periplasm ) atp[c] + h2o[c] + thr-L[p] --> adp[c] + h[c] + pi[c] + thr-L[c] ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ABC-35-RXN :gene-match ATP + L-leucine[periplasmic space] + H2O =ADP + phosphate + L-leucine[cytosol] leu-L h, thr-L 4 THRAi Threonine aldolase [c] : thr-L --> acald + gly ( B2551 OR B0870 ) ( THREONINE-ALDOLASE-RXN ) ( :METACYC ) LTAA-RXN :gene-match L-allo-threonine = glycine + acetaldehyde athr-L thr-L 2 THRD L-threonine dehydrogenase [c] : nad + thr-L --> 2aobut + h + nadh B3616 ( THREODEHYD-RXN ) ( ( RIGHT REMOVE PROTON ) ) THREODEHYD-RXN :gene-match L-threonine + NAD+ = 2-amino-3-oxobutanoate + NADH h 4 THRD_L L-threonine deaminase [c] : thr-L --> 2obut + nh4 ( B3117 OR B1814 OR B2797 OR B3772 ) ( THREDEHYD-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) THREDEHYD-RXN :gene-match L-threonine -> 2-oxobutanoate + ammonia AMMONIA nh4 2 THRPtex phospho-L-threonine transport via diffusion ( extracellular to periplasm ) thrp[e] <==> thrp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da thrp 0 THRS threonine synthase [c] : h2o + phom --> pi + thr-L B0004 ( THRESYN-RXN ) THRESYN-RXN :gene-match O-phospho-L-homoserine + H2O = phosphate + L-threonine 4 THRt2pp L-threonine efflux transport via proton antiport ( periplasm ) h[p] + thr-L[c] --> h[c] + thr-L[p] ( B0813 OR B3823 ) ( TRANS-RXN-244 ) TRANS-RXN-244 :gene-match H+[periplasmic space] + L-threonine[cytosol] =H+[cytosol] + L-threonine[periplasmic space] 2 THRt2rpp L-threonine reversible transport via proton symport ( periplasm ) h[p] + thr-L[p] <==> h[c] + thr-L[c] B3116 ( TRANS-RXN-72 ) TRANS-RXN-72 :gene-match H+[periplasmic space] + L-threonine[periplasmic space] =H+[cytosol] + L-threonine[cytosol] 2 THRt4pp L-threonine via sodium symport ( periplasm ) na1[p] + thr-L[p] --> na1[c] + thr-L[c] B3089 RXN0-4083 :gene-match Na+[periplasmic space] + L-serine[periplasmic space] =Na+[cytosol] + L-serine[cytosol] ser-L thr-L 1 THRtex L-threonine transport via diffusion ( extracellular to periplasm ) thr-L[e] <==> thr-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da thr-L 0 THRTRS Threonyl-tRNA synthetase [c] : atp + thr-L + trnathr --> amp + ppi + thrtrna B1719 ( THREONINE--TRNA-LIGASE-RXN ) THREONINE--TRNA-LIGASE-RXN :gene-match tRNAthr + L-threonine + ATP -> L-threonyl-tRNAthr + diphosphate + AMP 6 THYMtex thymine transport via diffusion ( extracellular to periplasm ) thym[e] <==> thym[p] ( B1377 OR B2215 OR B0241 OR B0929 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da thym 0 THZPSN thiazole phosphate synthesis [c] : atp + cys-L + dxyl5p + tyr-L --> 4hba + 4mpetz + ala-L + amp + co2 + h + h2o + ppi ( B2530 AND B3992 AND ( B3990 AND B3991 ) AND B0423 AND B4407 ) THIAZOLSYN2-RXN :gene-match L-tyrosine + 1-deoxy-D-xylulose 5-phosphate + This-COSH protein = 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate + 4-hydroxybenzyl alcohol + C1 of tyrosine + ThiS protein C1 of tyrosine, Thi-S, ThiS-CoASH-proteins co2, cys-L, h, ppi, ala-L, h2o, atp, amp 4 TKT1 transketolase [c] : r5p + xu5p-D <==> g3p + s7p ( B2935 OR B2465 ) ( 1TRANSKETO-RXN ) 1TRANSKETO-RXN :gene-match D-ribose-5-phosphate + D-xylulose-5-phosphate = D-sedoheptulose-7-phosphate + D-glyceraldehyde-3-phosphate 4 TKT2 transketolase [c] : e4p + xu5p-D <==> f6p + g3p ( B2465 OR B2935 ) ( 2TRANSKETO-RXN ) 2TRANSKETO-RXN :gene-match D-erythrose-4-phosphate + D-xylulose-5-phosphate = D-fructose-6-phosphate + D-glyceraldehyde-3-phosphate 4 TMAOR1 Trimethylamine N-oxide reductase ( menaquinol 8 ) [c] : h + mql8 + tmao --> h2o + mqn8 + tma ( ( B1587 AND B1588 AND B1589 AND B1590 ) OR ( B0894 AND B0895 AND B0896 ) ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 dmso, dms tma, tmao 4 TMAOR1pp Trimethylamine N-oxide reductase ( menaquinol 8 ) ( periplasm ) h[p] + mql8[c] + tmao[p] --> h2o[p] + mqn8[c] + tma[p] ( ( B1872 AND B1873 ) OR ( B0996 AND B0997 ) ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, Cytochromes-C mqn8, mql8 4 TMAOR2 Trimethylamine N-oxide reductase ( demethylmenaquinol 8 ) [c] : 2dmmql8 + h + tmao --> 2dmmq8 + h2o + tma ( B0894 AND B0895 AND B0896 ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 mqn8, dmso, dms, mql8 2dmmq8, tmao, 2dmmql8, tma 2 TMAOR2pp Trimethylamine N-oxide reductase ( demethylmenaquinol 8 ) ( periplasm ) 2dmmql8[c] + h[p] + tmao[p] --> 2dmmq8[c] + h2o[p] + tma[p] ( ( B1872 AND B1873 ) OR ( B0996 AND B0997 ) ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, Cytochromes-C 2dmmq8, 2dmmql8 4 TMAOtex Trimethylamine N-oxide transport via diffusion ( extracellular to periplasm ) tmao[e] <==> tmao[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tmao 0 TMAtex Trimethylamine transport via diffusion ( extracellular to periplasm ) tma[e] <==> tma[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tma 0 TMDK1 thymidine kinase ( ATP:thymidine ) [c] : atp + thymd --> adp + dtmp + h B1238 ( THYKI-RXN ) ( ( RIGHT REMOVE PROTON ) ) THYKI-RXN :gene-match thymidine + ATP -> dTMP + ADP h 4 TMDPP thymidine phosphorylase [c] : pi + thymd <==> 2dr1p + thym B4382 ( THYM-PHOSPH-RXN ) THYM-PHOSPH-RXN :gene-match thymidine + phosphate = deoxyribose-1-phosphate + thymine 4 TMDS thymidylate synthase [c] : dump + mlthf --> dhf + dtmp B2827 ( THYMIDYLATESYN-RXN ) THYMIDYLATESYN-RXN :gene-match dUMP + 5,10-methylene-THF = dTMP + 7,8-dihydrofolate 4 TMK thiamine kinase [c] : atp + thm --> adp + h + thmmp B1106 ( THIKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) THIKIN-RXN :gene-match thiamine + ATP = thiamine-phosphate + ADP h 4 TMPK thiamine-phosphate kinase [c] : atp + thmmp --> adp + thmpp B0417 ( THI-P-KIN-RXN ) THI-P-KIN-RXN :gene-match thiamine-phosphate + ATP = thiamine diphosphate + ADP 4 TMPPP thiamine-phosphate diphosphorylase [c] : 2mahmp + 4mpetz + h --> ppi + thmmp B3993 ( THI-P-SYN-RXN ) ( ( LEFT REMOVE PROTON ) ) THI-P-SYN-RXN :gene-match 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate + 4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate = thiamine-phosphate + diphosphate h 4 TPI triose-phosphate isomerase [c] : dhap <==> g3p B3919 ( TRIOSEPISOMERIZATION-RXN ) TRIOSEPISOMERIZATION-RXN :gene-match D-glyceraldehyde-3-phosphate = dihydroxy-acetone-phosphate 2 TPRDCOAS triphosphoribosyl-dephospho-CoA synthase [c] : atp + dpcoa --> 2tpr3dpcoa + ade B0613 ( RXN0-309 ) RXN0-309 :gene-match dephospho-CoA + ATP = 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA + adenine 4 TRDR thioredoxin reductase ( NADPH ) [c] : h + nadph + trdox --> nadp + trdrd ( ( B3781 AND ( B0888 AND B0888 ) ) OR B2582 ) ( THIOREDOXIN-REDUCT-NADPH-RXN ) ( :EXPANDED-RXN-MATCH ) THIOREDOXIN-REDUCT-NADPH-RXN :gene-match a reduced thioredoxin + NADP+ = oxidized thioredoxin + NADPH + H+ Red-Thioredoxin trdrd 4 TRE6PH trehalose-6-phosphate hydrolase [c] : h2o + tre6p --> g6p + glc-D B4239 ( TRE6PHYDRO-RXN ) TRE6PHYDRO-RXN :gene-match trehalose 6-phosphate + H2O = beta-D-glucose-6-phosphate + beta-D-glucose GLC glc-D 3 TRE6PP trehalose-phosphatase [c] : h2o + tre6p --> pi + tre B1897 ( TREHALOSEPHOSPHA-RXN ) TREHALOSEPHOSPHA-RXN :gene-match trehalose 6-phosphate + H2O = trehalose + phosphate 4 TRE6PS "alpha,alpha-trehalose-phosphate synthase ( UDP-forming )" [c] : g6p + udpg --> h + tre6p + udp B1896 TREHALOSE6PSYN-RXN :gene-match UDP-D-glucose + alpha-D-glucose-6-phosphate = UDP + trehalose 6-phosphate ALPHA-GLC-6-P h, g6p 3 TREH "alpha,alpha-trehalase" [c] : h2o + tre --> ( 2 ) glc-D B3519 ( TREHALA-RXN ) TREHALA-RXN :gene-match trehalose + H2O = 2 beta-D-glucose GLC glc-D 2 TREHpp "alpha,alpha-trehalase ( periplasm )" [p] : h2o + tre --> ( 2 ) glc-D B1197 TREHALA-RXN :gene-match trehalose + H2O = 2 beta-D-glucose GLC glc-D 2 TREptspp trehalose transport via PEP:Pyr PTS ( periplasm ) pep[c] + tre[p] --> pyr[c] + tre6p[c] ( B2417 AND B2415 AND B2416 AND B4240 ) ( TRANS-RXN-168 ) TRANS-RXN-168 :gene-match phosphoenolpyruvate + trehalose[periplasmic space] =trehalose 6-phosphate[cytosol] + pyruvate 4 TREtex trehalose transport via diffusion ( extracellular to periplasm ) tre[e] <==> tre[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tre 0 TRPAS2 Tryptophanase ( L-tryptophan ) [c] : h2o + trp-L <==> indole + nh4 + pyr B3708 ( TRYPTOPHAN-RXN ) ( ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) TRYPTOPHAN-RXN :gene-match L-tryptophan + H2O = indole + pyruvate + ammonia AMMONIA nh4 4 TRPS1 tryptophan synthase ( indoleglycerol phosphate ) [c] : 3ig3p + ser-L --> g3p + h2o + trp-L ( B1260 AND B1261 ) ( TRYPSYN-RXN ) TRYPSYN-RXN :gene-match indole-3-glycerol-phosphate + L-serine -> L-tryptophan + H2O + D-glyceraldehyde-3-phosphate 5 TRPS2 tryptophan synthase ( indole ) [c] : indole + ser-L --> h2o + trp-L ( B1260 AND B1261 ) ( RXN0-2382 ) RXN0-2382 :gene-match indole + L-serine = L-tryptophan + H2O 4 TRPS3 tryptophan synthase ( indoleglycerol phosphate ) [c] : 3ig3p --> g3p + indole ( B1260 AND B1261 ) ( RXN0-2381 ) RXN0-2381 :gene-match indole-3-glycerol-phosphate = indole + D-glyceraldehyde-3-phosphate 3 TRPt2rpp L-tryptophan reversible transport via proton symport ( periplasm ) h[p] + trp-L[p] <==> h[c] + trp-L[c] ( B0112 OR B3161 OR B3709 ) ( TRANS-RXN-76 ) TRANS-RXN-76 :gene-match L-tryptophan[periplasmic space] + H+[periplasmic space] =L-tryptophan[cytosol] + H+[cytosol] 2 TRPtex L-tryptophan transport via diffusion ( extracellular to periplasm ) trp-L[e] <==> trp-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da trp-L 0 TRPTRS Tryptophanyl-tRNA synthetase [c] : atp + trnatrp + trp-L --> amp + ppi + trptrna B3384 ( TRYPTOPHAN--TRNA-LIGASE-RXN ) TRYPTOPHAN--TRNA-LIGASE-RXN :gene-match L-tryptophan + tRNAtrp + ATP -> L-tryptophanyl-tRNAtrp + diphosphate + AMP 6 TRSARr tartronate semialdehyde reductase [c] : 2h3oppan + h + nadh <==> glyc-R + nad ( B0509 OR B3125 ) ( TSA-REDUCT-RXN ) ( :EXPANDED-RXN-MATCH ) TSA-REDUCT-RXN :gene-match glycerate + NAD(P)+ = tartronate semialdehyde + NAD(P)H + H+ NAD(P), NAD(P)H nadh, nad 3 TSULabcpp thiosulfate transport via ABC system ( periplasm ) atp[c] + h2o[c] + tsul[p] --> adp[c] + h[c] + pi[c] + tsul[c] ( ( B2422 AND B2425 AND B2424 AND B2423 ) OR ( B2422 AND B2424 AND B2423 AND B3917 ) ) ( ABC-7-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-7-RXN :gene-match ATP + thiosulfate[periplasmic space] + H2O =ADP + phosphate + thiosulfate[cytosol] h 5 TSULtex thiosulfate transport via diffusion ( extracellular to periplasm ) tsul[e] <==> tsul[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tsul 0 TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion ( extracellular to periplasm ) ttdca[e] --> ttdca[p] B2344 ( RXN0-1802 ) ( :EXPANDED-RXN-MATCH ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid ttdca 0 TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion ( extracellular to periplasm ) ttdcea[e] --> ttdcea[p] B2344 ( :UNMAPPED-CPDS ) RXN0-1802 :gene-match a fatty acid[extracellular space] =a fatty acid[periplasmic space] a fatty acid ttdcea 0 TUNGSabcpp tungstate transport via ABC system ( periplasm ) atp[c] + h2o[c] + tungs[p] --> adp[c] + h[c] + pi[c] + tungs[c] ( B0763 AND B0764 AND B0765 AND B0760 ) ABC-19-RXN :gene-match ATP + MoO42-[periplasmic space] + H2O =ADP + phosphate + MoO42-[cytosol] mobd h, tungs 4 TUNGStex tungstate transport via diffusion ( extracellular to periplasm ) tungs[e] <==> tungs[p] ( B2215 OR B0929 OR B1377 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tungs 0 TYMtex tyramine transport via diffusion ( extracellular to periplasm ) tym[e] <==> tym[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tym 0 TYROXDApp Tyramine:oxygen oxidoreductase( deaminating )( flavin-containing ) ( periplasm ) [p] : h2o + o2 + tym --> 4hoxpacd + h2o2 + nh4 B1386 AMINEOXID-RXN :gene-match an aliphatic amine + H2O + O2 = an aldehyde + ammonia + H2O2 an aldehyde, AMMONIA, Aliphatic-Amines tym, 4hoxpacd, nh4 3 TYRPpp phospho-L-tyrosine phosphatase ( periplasmic ) [p] : h2o + tyrp --> pi + tyr-L B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters tyrp, tyr-L 2 TYRPtex phopho-L-tyrosine transport via diffusion ( extracellular to periplasm ) tyrp[e] <==> tyrp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tyrp 0 TYRt2rpp L-tyrosine reversible transport via proton symport ( periplasm ) h[p] + tyr-L[p] <==> h[c] + tyr-L[c] ( B1907 OR B0112 OR B0576 ) ( TRANS-RXN-77 ) TRANS-RXN-77 :gene-match H+[periplasmic space] + L-tyrosine[periplasmic space] =H+[cytosol] + L-tyrosine[cytosol] 2 TYRTA tyrosine transaminase [c] : akg + tyr-L <==> 34hpp + glu-L ( B4054 OR B0928 ) ( TYRAMINOTRANS-RXN ) TYRAMINOTRANS-RXN :gene-match p-hydroxyphenylpyruvate + L-glutamate = L-tyrosine + alpha-ketoglutarate 4 TYRtex L-tyrosine transport via diffusion ( extracellular to periplasm ) tyr-L[e] <==> tyr-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da tyr-L 0 TYRTRS tyrosyl-tRNA synthetase [c] : atp + trnatyr + tyr-L --> amp + ppi + tyrtrna B1637 ( TYROSINE--TRNA-LIGASE-RXN ) TYROSINE--TRNA-LIGASE-RXN :gene-match tRNAtyr + L-tyrosine + ATP -> L-tyrosyl-tRNAtyr + diphosphate + AMP 6 U23GAAT UDP-3-O-( 3-hydroxymyristoyl )glucosamine acyltransferase [c] : 3hmrsACP + u3hga --> ACP + h + u23ga B0179 ( UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN ) ( ( RIGHT REMOVE PROTON ) ) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN :gene-match UDP-3-O-(3-hydroxymyristoyl)glucosamine + (R)-3-hydroxymyristoyl-ACP = UDP-2,3-bis(3-hydroxymyristoyl)glucosamine + acyl carrier protein h 4 UAAGDS "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase" [c] : 26dap-M + atp + uamag --> adp + h + pi + ugmd B0085 ( UDP-NACMURALGLDAPLIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) UDP-NACMURALGLDAPLIG-RXN :gene-match meso-diaminopimelate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + ATP = UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + phosphate + ADP h 6 UACGALPpp UDP-N-acetyl-D-galactosamine pyrophosphohydrolase ( periplasm ) [p] : h2o + udpacgal --> acgal1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates h, acgal1p, udpacgal 2 UACGAMPpp UDP-N-acetyl-D-glucosamine pyrophosphohydrolase ( periplasm ) [p] : h2o + uacgam --> acgam1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates acgam1p, uacgam, h 2 UACGAMtex UDP-N-acetyl-D-glucosamine transport via diffusion ( extracellular to periplasm ) uacgam[e] <==> uacgam[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da uacgam 0 UACMAMO UDP-N-acetyl-D-mannosamine oxidoreductase [c] : h2o + ( 2 ) nad + uacmam --> ( 3 ) h + ( 2 ) nadh + uacmamu B3787 ( UDPMANNACADEHYDROG-RXN ) UDPMANNACADEHYDROG-RXN :gene-match UDP-N-acetyl-D-mannosamine + 2 NAD+ + H2O = UDP-N-acetyl-beta-D-mannosaminouronate + 2 NADH + 2 H+ 6 UAG2E UDP-N-acetylglucosamine 2-epimerase [c] : uacgam <==> uacmam B3786 ( UDPGLCNACEPIM-RXN ) UDPGLCNACEPIM-RXN :gene-match UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-mannosamine 2 UAGAAT UDP-N-acetylglucosamine acyltransferase [c] : 3hmrsACP + uacgam <==> ACP + u3aga ( B1094 AND B0181 ) ( UDPNACETYLGLUCOSAMACYLTRANS-RXN ) UDPNACETYLGLUCOSAMACYLTRANS-RXN :gene-match (R)-3-hydroxymyristoyl-ACP + UDP-N-acetyl-D-glucosamine = UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine + acyl carrier protein 4 UAGCVT UDP-N-acetylglucosamine 1-carboxyvinyltransferase [c] : pep + uacgam --> pi + uaccg B3189 ( UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN ) UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN :gene-match UDP-N-acetyl-D-glucosamine + phosphoenolpyruvate = UDP-GlcNAc-enolpyruvate + phosphate 4 UAGDP UDP-N-acetylglucosamine diphosphorylase [c] : acgam1p + h + utp --> ppi + uacgam B3730 ( NAG1P-URIDYLTRANS-RXN ) ( ( LEFT REMOVE PROTON ) ) NAG1P-URIDYLTRANS-RXN :gene-match N-acetyl-glucosamine-1-phosphate + UTP = UDP-N-acetyl-D-glucosamine + diphosphate h 4 UAGPT3 UDP-N-acetylglucosamine-N-acetylmuramyl-( pentapeptide )pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [c] : uacgam + uagmda --> h + uaagmda + udp B0090 ( NACGLCTRANS-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) NACGLCTRANS-RXN :gene-match N-acetylmuramoyl-pentapeptide-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol + UDP NAcMur-Peptide-NAcGlc-Undecaprenols, NAcMur-Peptide-Undecaprenols uagmda, uaagmda, h 2 UAMAGS UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [c] : atp + glu-D + uama --> adp + h + pi + uamag B0088 ( UDP-NACMURALA-GLU-LIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) UDP-NACMURALA-GLU-LIG-RXN :gene-match D-glutamate + UDP-N-acetylmuramoyl-L-alanine + ATP = UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + phosphate + ADP h 6 UAMAS UDP-N-acetylmuramoyl-L-alanine synthetase [c] : ala-L + atp + uamr --> adp + h + pi + uama B0091 ( UDP-NACMUR-ALA-LIG-RXN ) ( ( RIGHT REMOVE PROTON ) ) UDP-NACMUR-ALA-LIG-RXN :gene-match L-alanine + UDP-N-acetylmuramate + ATP = UDP-N-acetylmuramoyl-L-alanine + phosphate + ADP h 6 UAPGR UDP-N-acetylenolpyruvoylglucosamine reductase [c] : h + nadph + uaccg --> nadp + uamr B3972 ( UDPNACETYLMURAMATEDEHYDROG-RXN ) ( ( LEFT REMOVE PROTON ) ) UDPNACETYLMURAMATEDEHYDROG-RXN :gene-match NADP+ + UDP-N-acetylmuramate = NADPH + UDP-GlcNAc-enolpyruvate h 4 UDCPDP undecaprenyl-diphosphatase [c] : h2o + udcpdp --> h + pi + udcpp ( B0841 OR B3057 OR B1278 ) ( UNDECAPRENYL-DIPHOSPHATASE-RXN ) ( ( RIGHT REMOVE PROTON ) ) UNDECAPRENYL-DIPHOSPHATASE-RXN :gene-match undecaprenyl diphosphate + H2O -> undecaprenyl phosphate + phosphate h 4 UDCPDPpp undecaprenyl-diphosphatase ( periplasm ) [p] : h2o + udcpdp --> h + pi + udcpp ( B3057 OR B0841 OR B1278 ) UNDECAPRENYL-DIPHOSPHATASE-RXN :gene-match undecaprenyl diphosphate + H2O -> undecaprenyl phosphate + phosphate h 4 UDCPDPS Undecaprenyl diphosphate synthase [c] : frdp + ( 8 ) ipdp --> ( 8 ) ppi + udcpdp B0174 ( UPPSYN-RXN ) ( :EXPANDED-RXN-MATCH ) DECAPCISTRANSFER-RXN :gene-match di-trans,poly-cis-decaprenyl diphosphate + delta3-isopentenyl-PP = diphosphate + di-trans,poly-cis-undecaprenyl diphosphate T-POLY-C-UNDECAPRENYL-DIPHOSPHATE, T-POLY-C-DECAPRENYL-DIPHOSPHATE frdp, udcpdp 2 UDPACGALtex UDP-N-acetyl-D-galactosamine transport via diffusion ( extracellular to periplasm ) udpacgal[e] <==> udpacgal[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da udpacgal 0 UDPG4E UDPglucose 4-epimerase [c] : udpg <==> udpgal B0759 ( UDPGLUCEPIM-RXN ) UDPGLUCEPIM-RXN :gene-match UDP-D-glucose = UDP-galactose UDP-GLACTOSE udpgal 1 UDPGALM UDPgalactopyranose mutase [c] : udpgal --> udpgalfur B2036 ( GALPMUT-RXN ) GALPMUT-RXN :gene-match UDP-galactose = UDP-D-galacto-1,4-furanose UDP-GLACTOSE udpgal 1 UDPGALPpp UDPgalactose pyrophosphohydrolase [p] : h2o + udpgal --> gal1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates h, udpgal, gal1p 2 UDPGALtex UDPgalactose transport via diffusion ( extracellular to periplasm ) udpgal[e] <==> udpgal[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da udpgal 0 UDPGD UDPglucose 6-dehydrogenase [c] : h2o + ( 2 ) nad + udpg --> ( 3 ) h + ( 2 ) nadh + udpglcur B2028 ( UGD-RXN ) ( ( RIGHT REMOVE PROTON ) ) UGD-RXN :gene-match H2O + 2 NAD+ + UDP-D-glucose = 2 NADH + UDP-D-glucuronate h 5 UDPGDC UDP-glucuronate C-4'' decarboxylase [c] : nad + udpglcur --> co2 + nadh + udpLa4o B2255 ( RXN0-1861 ) RXN0-1861 :gene-match UDP-D-glucuronate + NAD+ -> UDP-L-Ara4O + CO2 + NADH 5 UDPGLCURtex UDP-D-glucuronate transport via diffusion ( extracellular to periplasm ) udpglcur[e] <==> udpglcur[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da udpglcur 0 UDPGPpp UDPglucose pyrophosphohydrolase [p] : h2o + udpg --> g1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates udpg, h, g1p 2 UDPGtex UDPglucose transport via diffusion ( extracellular to periplasm ) udpg[e] <==> udpg[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da udpg 0 UDPKAAT UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase [c] : glu-L + udpLa4o <==> akg + udpLa4n B2253 ( RXN0-1863 ) RXN0-1863 :gene-match UDP-L-Ara4O + L-glutamate = alpha-ketoglutarate + UDP-L-Ara4N 4 UGLCURPpp UDP-D-glucuronate pyrophosphohydrolase ( periplasm ) [p] : h2o + udpglcur --> glcur1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates h, glcur1p, udpglcur 2 UGLT UDPglucose--hexose-1-phosphate uridylyltransferase [c] : gal1p + udpg <==> g1p + udpgal B0758 ( GALACTURIDYLYLTRANS-RXN ) GALACTURIDYLYLTRANS-RXN :gene-match UDP-D-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose UDP-GLACTOSE udpgal 3 UGLYCH Ureidoglycolate hydrolase [c] : ( 2 ) h + h2o + urdglyc --> co2 + glx + ( 2 ) nh4 B0505 ( UREIDOGLYCOLATE-HYDROLASE-RXN ) ( ( LEFT REMOVE PROTON ) ( RIGHT SUBSTITUTE AMMONIA AMMONIUM ) ) UREIDOGLYCOLATE-HYDROLASE-RXN :gene-match H2O + (S)-ureidoglycolate = CO2 + 2 ammonia + glyoxylate AMMONIA h, nh4 4 UGMDDS "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase" [c] : alaala + atp + ugmd --> adp + h + pi + ugmda B0086 ( UDP-NACMURALGLDAPAALIG-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) UDP-NACMURALGLDAPAALIG-RXN :gene-match D-alanyl-D-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + ATP = UDP-N-acetylmuramoyl-pentapeptide + phosphate + ADP UDP-NAcMur-Peptides h, ugmda 5 UHGADA UDP-3-O-acetylglucosamine deacetylase [c] : h2o + u3aga --> ac + u3hga B0096 ( UDPACYLGLCNACDEACETYL-RXN ) UDPACYLGLCNACDEACETYL-RXN :gene-match UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine + H2O -> UDP-3-O-(3-hydroxymyristoyl)glucosamine + acetate 4 ULA4NFT UDP-L-Ara4N formyltransferase [c] : 10fthf + udpLa4n --> h + thf + udpLa4fn B2255 ( RXN0-1862 ) ( ( RIGHT REMOVE PROTON ) ) RXN0-1862 :gene-match UDP-L-Ara4N + N10-formyl-THF -> UDP-L-Ara4-Formyl-N + tetrahydrofolate h 4 UM3PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [c] : LalaDgluMdap + atp + uamr --> adp + h + pi + ugmd B4233 RXN0-2361 :gene-match UDP-N-acetylmuramate + L-Ala-D-Glu-meso-A2pm + ATP -> UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + ADP + phosphate L-ALA-D-GLU-MESOA2PM h, LalaDgluMdap 5 UM4PCP "UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase" [c] : h2o + um4p --> ala-D + ugmd B1192 RXN0-2061 :gene-match UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanine + H2O -> L-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate ala-L ala-D 3 UM4PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase [c] : LalaDgluMdapDala + atp + uamr --> adp + h + pi + um4p B4233 ( :UNMAPPED-CPDS ) RXN0-2361 :gene-match UDP-N-acetylmuramate + L-Ala-D-Glu-meso-A2pm + ATP -> UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + ADP + phosphate L-ALA-D-GLU-MESOA2PM, ugmd h, LalaDgluMdapDala, um4p 4 UMPK UMP kinase [c] : atp + ump <==> adp + udp ( B0910 OR B0171 ) ( UMPKI-RXN ) UMPKI-RXN :gene-match ATP + UMP = ADP + UDP 4 UMPtex UMP transport via diffusion ( extracellular to periplasm ) ump[e] <==> ump[p] ( B0929 OR B1377 OR B2215 OR B0241 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ump 0 UPLA4FNT undecaprenyl phosphate-L-Ara4FN transferase [c] : udcpp + udpLa4fn --> uLa4fn + udp B2254 RXN0-3521 :gene-match UDP-beta-L-Ara4FN + undecaprenyl phosphate -> undecaprenyl phosphate-alpha-L-Ara4FN + UDP CPD0-887 udpLa4fn 3 UPP3MT uroporphyrinogen methyltransferase [c] : ( 2 ) amet + uppg3 --> ( 2 ) ahcys + dscl + h ( B3803 OR B3368 ) ( UROPORIIIMETHYLTRANSA-RXN ) ( ( RIGHT REMOVE PROTON ) ) UROPORIIIMETHYLTRANSA-RXN :gene-match 2 S-adenosyl-L-methionine + uroporphyrinogen-III = 2 S-adenosyl-L-homocysteine + precorrin-2 h 4 UPP3S uroporphyrinogen-III synthase [c] : hmbil --> h2o + uppg3 B3804 ( UROGENIIISYN-RXN ) UROGENIIISYN-RXN :gene-match hydroxymethylbilane = H2O + uroporphyrinogen-III 3 UPPDC1 uroporphyrinogen decarboxylase ( uroporphyrinogen III ) [c] : ( 4 ) h + uppg3 --> ( 4 ) co2 + cpppg3 B3997 ( UROGENDECARBOX-RXN ) ( ( LEFT REMOVE PROTON ) ) UROGENDECARBOX-RXN :gene-match uroporphyrinogen-III = 4 CO2 + coproporphyrinogen III h 3 UPPRT uracil phosphoribosyltransferase [c] : prpp + ura --> ppi + ump B2498 ( URACIL-PRIBOSYLTRANS-RXN ) URACIL-PRIBOSYLTRANS-RXN :gene-match diphosphate + UMP = 5-phosphoribosyl 1-pyrophosphate + uracil 4 URAt2pp uracil transport in via proton symport ( periplasm ) h[p] + ura[p] --> h[c] + ura[c] B2497 ( TRANS-RXN-132 ) TRANS-RXN-132 :gene-match H+[periplasmic space] + uracil[periplasmic space] =H+[cytosol] + uracil[cytosol] 2 URAtex uracil transport via diffusion ( extracellular to periplasm ) ura[e] <==> ura[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da ura 0 URDGLYCD ureidoglycolate dehydrogenase [c] : nad + urdglyc --> h + nadh + oxur B0517 ( R165-RXN ) ( :EXPANDED-RXN-MATCH ( RIGHT REMOVE PROTON ) ) R165-RXN :gene-match (S)-ureidoglycolate + NAD(P)+ = oxalureate + NAD(P)H NAD(P), NAD(P)H h, nadh, nad 2 UREAtex Urea transport via diffusion ( extracellular to periplasm ) urea[e] <==> urea[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da urea 0 UREAtpp Urea transport via facilitate diffusion ( periplasm ) urea[p] <==> urea[c] B3927 TRANS-RXN-131 :gene-match glycerol[periplasmic space] =glycerol[cytosol] glyc urea 0 URIDK2r uridylate kinase ( dUMP ) [c] : atp + dump <==> adp + dudp B0171 ( |( DEOXY )NUCLEOSIDE-PHOSPHATE-KINASE-RXN| ) ( :METACYC :EXPANDED-RXN-MATCH ) UMPKI-RXN :gene-match ATP + UMP = ADP + UDP udp, ump dudp, dump 2 URIH Uridine hydrolase [c] : h2o + uri --> rib-D + ura ( B2162 OR B0651 OR B0030 ) ( URIDINE-NUCLEOSIDASE-RXN ) URIDINE-NUCLEOSIDASE-RXN :gene-match uridine + H2O -> uracil + D-ribose 4 URIK2 uridine kinase ( GTP:Uridine ) [c] : gtp + uri --> gdp + h + ump B2066 ( URKI-RXN ) ( ( RIGHT REMOVE PROTON ) ) URKI-RXN :gene-match uridine + GTP = UMP + GDP h 4 URIt2pp uridine transport in via proton symport ( periplasm ) h[p] + uri[p] --> h[c] + uri[c] ( B2393 OR B2964 ) ( TRANS-RXN-108I ) TRANS-RXN-108I :gene-match H+[periplasmic space] + uridine[periplasmic space] =H+[cytosol] + uridine[cytosol] 2 URIt2rpp "uridine transport in via proton symport, reversible ( periplasm )" h[p] + uri[p] <==> h[c] + uri[c] B2406 ( TRANS-RXN-108I ) TRANS-RXN-31 :gene-match H+[periplasmic space] + xanthosine[periplasmic space] =H+[cytosol] + xanthosine[cytosol] xtsn uri 1 USHD UDP-sugar hydrolase [c] : h2o + u23ga --> ( 2 ) h + lipidX + ump B0524 ( LIPIDXSYNTHESIS-RXN ) ( ( RIGHT REMOVE PROTON ) ) LIPIDXSYNTHESIS-RXN :gene-match H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP h 4 VALabcpp L-valine transport via ABC system ( periplasm ) atp[c] + h2o[c] + val-L[p] --> adp[c] + h[c] + pi[c] + val-L[c] ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ( ABC-36-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-36-RXN :gene-match ATP + L-valine[periplasmic space] + H2O =ADP + phosphate + L-valine[cytosol] h 5 VALt2rpp L-valine reversible transport via proton symport ( periplasm ) h[p] + val-L[p] <==> h[c] + val-L[c] B0401 TRANS-RXN-126A :gene-match Na+[periplasmic space] + L-valine[periplasmic space] =Na+[cytosol] + L-valine[cytosol] na1 h 1 VALTA valine transaminase [c] : akg + val-L <==> 3mob + glu-L B3770 ( BRANCHED-CHAINAMINOTRANSFERVAL-RXN ) BRANCHED-CHAINAMINOTRANSFERVAL-RXN :gene-match L-valine + alpha-ketoglutarate = 2-keto-isovalerate + L-glutamate 4 VALtex L-valine transport via diffusion ( extracellular to periplasm ) val-L[e] <==> val-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da val-L 0 VALTRS Valyl-tRNA synthetase [c] : atp + trnaval + val-L --> amp + ppi + valtrna B4258 ( VALINE--TRNA-LIGASE-RXN ) VALINE--TRNA-LIGASE-RXN :gene-match tRNAval + L-valine + ATP -> L-valyl-tRNAval + diphosphate + AMP 6 VPAMT Valine-pyruvate aminotransferase [c] : 3mob + ala-L --> pyr + val-L B3572 ( VALINE-PYRUVATE-AMINOTRANSFER-RXN ) VALINE-PYRUVATE-AMINOTRANSFER-RXN :gene-match pyruvate + L-valine = L-alanine + 2-keto-isovalerate 4 X5PL3E L-xylulose 5-phosphate 3-epimerase [c] : xu5p-L --> ru5p-L B4197 ( LXULRU5P-RXN ) LXULRU5P-RXN :gene-match L-ribulose-5-phosphate = L-xylulose-5-phosphate 2 XAND xanthine dehydrogenase [c] : h2o + nad + xan --> h + nadh + urate ( B2866 AND B2867 AND B2868 ) ( RXN0-901 ) RXN0-901 :gene-match xanthine + NAD+ + H2O = urate + NADH + H+ 6 XANt2pp xanthine transport in via proton symport ( periplasm ) h[p] + xan[p] --> h[c] + xan[c] B3654 RXN-5076 :gene-match xanthine[periplasmic space] + H+[periplasmic space] =xanthine[cytosol] + H+[cytosol] 2 XANtex xanthine transport via diffusion ( extracellular to periplasm ) xan[e] <==> xan[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da xan 0 XMPtex XMP transport via diffusion ( extracellular to periplasm ) xmp[e] <==> xmp[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da xmp 0 XPPT xanthine phosphoribosyltransferase [c] : prpp + xan --> ppi + xmp B0238 ( XANPRIBOSYLTRAN-RXN ) XANPRIBOSYLTRAN-RXN :gene-match xanthosine-5-phosphate + diphosphate = 5-phosphoribosyl 1-pyrophosphate + xanthine 4 XTSNH Xanthosine hydrolase [c] : h2o + xtsn --> rib-D + xan B0030 ( RXN0-363 ) RXN0-363 :gene-match xanthosine + H2O -> xanthine + D-ribose 4 XTSNt2rpp Xanthosine transport via proton symport ( periplasm ) h[p] + xtsn[p] <==> h[c] + xtsn[c] B2406 ( TRANS-RXN-31 ) TRANS-RXN-31 :gene-match H+[periplasmic space] + xanthosine[periplasmic space] =H+[cytosol] + xanthosine[cytosol] 2 XTSNtex xanthosine transport via diffusion ( extracellular to periplasm ) xtsn[e] <==> xtsn[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da xtsn 0 XYLabcpp D-xylose transport via ABC system ( periplasm ) atp[c] + h2o[c] + xyl-D[p] --> adp[c] + h[c] + pi[c] + xyl-D[c] ( B3566 AND B3567 AND B3568 ) ( ABC-33-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-33-RXN :gene-match ATP + D-xylose[periplasmic space] + H2O =ADP + phosphate + D-xylose[cytosol] h 5 XYLI1 xylose isomerase [c] : xyl-D <==> xylu-D B3565 ( XYLISOM-RXN ) XYLISOM-RXN :gene-match D-xylose = xylulose 2 XYLI2 xylose isomerase [c] : glc-D <==> fru B3565 ( GLUCISOM-RXN ) ( :METACYC ) XYLISOM-RXN :gene-match D-xylose = xylulose xyl-D, xylu-D glc-D, fru 0 XYLK xylulokinase [c] : atp + xylu-D --> adp + h + xu5p-D ( B3564 OR B0063 ) ( XYLULOKIN-RXN ) ( ( RIGHT REMOVE PROTON ) ) XYLULOKIN-RXN :gene-match xylulose + ATP = D-xylulose-5-phosphate + ADP h 4 XYLK2 L-xylulokinase [c] : atp + xylu-L --> adp + h + xu5p-L ( B0063 OR B3580 ) ( LYXK-RXN ) ( ( RIGHT REMOVE PROTON ) ) LYXK-RXN :gene-match L-xylulose + ATP = L-xylulose-5-phosphate + ADP h 4 XYLt2pp D-xylose transport in via proton symport ( periplasm ) h[p] + xyl-D[p] --> h[c] + xyl-D[c] B4031 ( TRANS-RXN-30 ) TRANS-RXN-30 :gene-match H+[periplasmic space] + D-xylose[periplasmic space] =H+[cytosol] + D-xylose[cytosol] 2 XYLtex D-xylose transport via diffusion ( extracellular to periplasm ) xyl-D[e] <==> xyl-D[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da xyl-D 0 XYLUtex L-xylulose transport via diffusion ( extracellular to periplasm ) xylu-L[e] <==> xylu-L[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( RXN0-1683 ) ( :EXPANDED-RXN-MATCH ) RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da xylu-L 0 ZN2t3pp zinc ( Zn+2 ) transport out via proton antiport ( periplasm ) h[p] + zn2[c] --> h[c] + zn2[p] ( B0752 OR B3915 ) ( TRANS-RXN-200 ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] 2 Zn2tex zinc ( Zn+2 ) transport via diffusion ( extracellular to periplasm ) zn2[e] <==> zn2[p] ( B0241 OR B0929 OR B1377 OR B2215 ) ( :DIFFUSION ) ( :OUTER-MEMBRANE-DIFFUSION )RXN0-2481 :gene-match hydrophilic solute or ion [extracellular space] =hydrophilic solute or ion [periplasmic space] Hydrophilic-Solute-Or-Ion-<600Da zn2 0 ZN2tpp zinc transport in via permease ( no H+ ) zn2[p] --> zn2[c] B3040 RXN0-12 :gene-match Zn2+[periplasmic space] =Zn2+[cytoplasm] 1 ZNabcpp zinc ( Zn+2 ) transport via ABC system ( periplasm ) atp[c] + h2o[c] + zn2[p] --> adp[c] + h[c] + pi[c] + zn2[c] ( B1857 AND B1859 AND B1858 ) ( ABC-63-RXN ) ( ( RIGHT REMOVE PROTON ) ) ABC-63-RXN :gene-match Zn2+[periplasmic space] + H2O + ATP =Zn2+[cytosol] + ADP + phosphate h 5