abbreviation officialName equation geneAssociation ecocyc-rxn-ids analysis notes 14GLUCANabcpp "1,4-alpha-D-glucan transport via ABC system ( periplasm )" 14glucan[p] + atp[c] + h2o[c] --> 14glucan[c] + adp[c] + h[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, 14glucan 4 23PDE2pp "2',3'-cyclic-nucleotide phosphodiesterase ( UMP ) ( periplasm )" [p] : 23cump + h2o --> 3ump + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides h, 23cump, 3ump 1 23PDE4pp "2',3'-cyclic-nucleotide phosphodiesterase ( CMP ) ( periplasm )" [p] : 23ccmp + h2o --> 3cmp + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides h, 3cmp, 23ccmp 1 23PDE7pp "2',3'-cyclic-nucleotide phosphodiesterase ( AMP ) ( periplasm )" [p] : 23camp + h2o --> 3amp + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides 23camp, h, 3amp 1 23PDE9pp "2',3'-cyclic-nucleotide phosphodiesterase ( GMP ) ( periplasm )" [p] : 23cgmp + h2o --> 3gmp + h B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, pi, Ribonucleosides 3gmp, 23cgmp, h 1 2AGPEAT120 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C12:0 ) [c] : 2agpe120 + atp + ddca --> amp + pe120 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpe120, ddca, pe120 3 2AGPEAT140 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C14:0 ) [c] : 2agpe140 + atp + ttdca --> amp + pe140 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP 2agpe140, ttdca, pe140 3 2AGPEAT160 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C16:0 ) [c] : 2agpe160 + atp + hdca --> amp + pe160 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP hdca, pe160, 2agpe160 3 2AGPEAT161 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C16:1 ) [c] : 2agpe161 + atp + hdcea --> amp + pe161 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pe161, hdcea, 2agpe161 3 2AGPEAT180 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C18:0 ) [c] : 2agpe180 + atp + ocdca --> amp + pe180 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pe180, 2agpe180, ocdca 3 2AGPEAT181 2-acyl-glycerophospho-ethanolamine acyltransferase ( n-C18:1 ) [c] : 2agpe181 + atp + ocdcea --> amp + pe181 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pe181, 2agpe181, ocdcea 3 2AGPGAT160 2-acyl-glycerophospho-glycerol acyltransferase ( n-C16:0 ) [c] : 2agpg160 + atp + hdca --> amp + pg160 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP hdca, pg160, 2agpg160 3 2AGPGAT161 2-acyl-glycerophospho-glycerol acyltransferase ( n-C16:1 ) [c] : 2agpg161 + atp + hdcea --> amp + pg161 + ppi B2836 ACYLACPSYNTH-RXN :gene-match ATP + a fatty acid + acyl carrier protein = AMP + diphosphate + an acyl-ACP ACP, a fatty acid, tdeACP pg161, hdcea, 2agpg161 3 2DGLCNRx 2-dehydro-D-gluconate reductase ( NADH ) [c] : 2dhglcn + h + nadh --> glcn + nad B3553 1.1.1.215-RXN :gene-match NADP+ + gluconate = 2-dehydro-D-gluconate + NADPH nadph, nadp, 2dhguln h, nadh, nad, 2dhglcn 1 2DGULRx 2-dehydro-L-gulonate reductase ( NADH ) [c] : 2dhguln + h + nadh --> idon-L + nad B3553 YIAE2-RXN :gene-match 2-dehydro-D-gluconate + NADPH = L-idonate + NADP+ nadph, nadp h, nadh, nad 2 2MAHMP 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphatase [c] : 2mahmp + h2o --> 4ampm + h + pi ( B0446 OR B1134 ) RXN0-3542 :gene-match thiamine diphosphate + H2O -> thiamine-phosphate + phosphate thmpp, thmmp 2mahmp, 4ampm, h 2 3NTD2pp 3'-nucleotidase ( UMP ) ( periplasm ) [p] : 3ump + h2o --> pi + uri B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides uri, 3ump 2 3NTD4pp 3'-nucleotidase ( CMP ) ( periplasm ) [p] : 3cmp + h2o --> cytd + pi B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides cytd, 3cmp 2 3NTD7pp 3'-nucleotidase ( AMP ) ( periplasm ) [p] : 3amp + h2o --> adn + pi B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides adn, 3amp 2 3NTD9pp 3'-nucleotidase ( GMP ) ( periplasm ) [p] : 3gmp + h2o --> gsn + pi B4213 3-NUCLEOTID-RXN :gene-match a nucleoside 3'-phosphate + H2O = a ribonucleoside + phosphate 3-Prime-Ribonucleoside-Monophosphates, Ribonucleosides 3gmp, gsn 2 3OAS141 3-oxoacyl-[acyl-carrier-protein] synthase ( n-C14:1 ) [c] : cddec5eACP + h + malACP --> 3ocmrs7eACP + ACP + co2 B2323 3-OXOACYL-ACP-SYNTH-RXN :gene-match an acyl-ACP + malonyl-ACP -> acyl carrier protein + a beta-ketoacyl-ACP + CO2 tdeACP, 3opalmACP cddec5eACP, 3ocmrs7eACP, h 3 3PEPTabcpp tripeptide ( LalaDgluMdap ) transport via ABC system ( periplasm ) LalaDgluMdap[p] + atp[c] + h2o[c] --> LalaDgluMdap[c] + adp[c] + h[c] + pi[c] ( B1329 AND B1244 AND B1245 AND B1246 AND B1247 ) ABC-22-RXN :gene-match ATP + a peptide[periplasmic space] + H2O =ADP + phosphate + a peptide[cytosol] Peptides h, LalaDgluMdap 4 42A12BOOXpp "4-( 2-Aminoethyl )-1,2-benzenediol:oxygen oxidoreductase( deaminating )( flavin-containing )" [p] : dopa + h2o + o2 --> 34dhpac + h2o2 + nh4 B1386 AMINEOXID-RXN :gene-match an aliphatic amine + H2O + O2 = an aldehyde + ammonia + H2O2 an aldehyde, AMMONIA, Aliphatic-Amines nh4, 34dhpac, dopa 3 5DGLCNt2rpp "5-Dehydro-D-gluconate transport via proton symport, reversible ( periplasm )" 5dglcn[p] + h[p] <==> 5dglcn[c] + h[c] B4265 TRANS-RXN-181 :gene-match H+[periplasmic space] + L-idonate[periplasmic space] =L-idonate[cytosol] + H+[cytosol] idon-L 5dglcn 1 AAMYL alpha-amylase [c] : 14glucan --> malthx B1927 ALPHA-AMYL-RXN :gene-match a 1,4-alpha-D-glucan = maltodextrin CPD-1790 malthx 1 AAMYLpp alpha-amylase ( periplasm ) [p] : 14glucan --> malthx B3571 ALPHA-AMYL-RXN :gene-match a 1,4-alpha-D-glucan = maltodextrin CPD-1790 malthx 1 AB6PGH Arbutin 6-phosphate glucohydrolase [c] : arbt6p + h2o --> g6p + hqn B2901 6-PHOSPHO-BETA-GLUCOSIDASE-RXN :gene-match 6-phospho-beta-D-glucosyl-(1,4)-D-glucose + H2O -> beta-D-glucose-6-phosphate + beta-D-glucose GLC, CPD-507 hqn, arbt6p 2 ACANTHAT acetyl-CoA:anthranilate acetyltransferase [c] : accoa + anth --> acanth + coa B1463 2.3.1.118-RXN :gene-match an N-hydroxy-arylamine + acetyl-CoA = an N-acetoxyarylamine + coenzyme A N-Acetoxy-Arylamines, N-Hydroxy-Arylamines anth, acanth 2 ACCOAC acetyl-CoA carboxylase [c] : accoa + atp + hco3 --> adp + h + malcoa + pi ( B0185 AND B2316 AND B3255 AND B3256 ) ACETYL-COA-CARBOXYLTRANSFER-RXN :gene-match ATP + acetyl-CoA + HCO3- + H+ = malonyl-CoA + phosphate + ADP 7 ACMANAptspp N-acetyl-D-mannosamine transport via PTS ( periplasm ) acmana[p] + pep[c] --> acmanap[c] + pyr[c] ( B1817 AND B1818 AND B1819 AND B2415 AND B2416 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate sbt6p, sbt-D acmanap, acmana 2 ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS ( periplasm ) acmum[p] + pep[c] --> acmum6p[c] + pyr[c] ( B2417 AND B2429 AND B2415 AND B2416 ) RXN0-17 :gene-match N-acetylmuramate[periplasmic space] + phosphoenolpyruvate =MurNAc-6-P[cytoplasm] + pyruvate 4 ACNAMtex N-acetylneuraminate transport via diffusion ( extracellular to periplasm ) acnam[e] <==> acnam[p] ( B4311 OR B0929 OR B2215 ) RXN0-0 :gene-match N-acetylneuraminate[extracellular space] =N-acetylneuraminate[periplasmic space] 1 ACOAD1f acyl-CoA dehydrogenase ( butanoyl-CoA ) [c] : btcoa + fad --> b2coa + fadh2 B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa b2coa, btcoa 2 ACOAD2f acyl-CoA dehydrogenase ( hexanoyl-CoA ) [c] : fad + hxcoa --> fadh2 + hx2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa hxcoa, hx2coa 2 ACOAD3f acyl-CoA dehydrogenase ( octanoyl-CoA ) [c] : fad + occoa --> fadh2 + oc2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa occoa, oc2coa 2 ACOAD5f acyl-CoA dehydrogenase ( dodecanoyl-CoA ) [c] : ddcacoa + fad --> dd2coa + fadh2 B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa ddcacoa, dd2coa 2 ACOAD7f acyl-CoA dehydrogenase ( hexadecanoyl-CoA ) [c] : fad + pmtcoa --> fadh2 + hdd2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa pmtcoa, hdd2coa 2 ACOAD8f acyl-CoA dehydrogenase ( octadecanoyl-CoA ) [c] : fad + stcoa --> fadh2 + od2coa B0221 ACYLCOADEHYDROG-RXN :gene-match an acyl-CoA + FAD -> FADH2 + a delta2-enoyl-CoA D2-ENOYL-COA, tdecoa od2coa, stcoa 2 ACt4pp Na+/Acetate symport ( periplasm ) ac[p] + na1[p] --> ac[c] + na1[c] B4067 RXN0-1981 :gene-match acetate[periplasmic space] =acetate[cytosol] na1 1 ADEt2rpp adenine transport via proton symport ( reversible ) ( periplasm ) ade[p] + h[p] <==> ade[c] + h[c] B3654 RXN-5076 :gene-match xanthine[periplasmic space] + H+[periplasmic space] =xanthine[cytosol] + H+[cytosol] xan ade 1 ADK3 adentylate kinase ( GTP ) [c] : amp + gtp <==> adp + gdp B0474 ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP atp gtp, gdp 2 ADK4 adentylate kinase ( ITP ) [c] : amp + itp <==> adp + idp B0474 ADENYL-KIN-RXN :gene-match AMP + ATP = 2 ADP atp itp, idp 2 ADOCBLabcpp Adenosylcobalamin transport via ABC system ( periplasm ) adocbl[p] + atp[c] + h2o[c] --> adocbl[c] + adp[c] + h[c] + pi[c] ( B1711 AND B1709 AND B0158 ) ABC-5-RXN :gene-match ATP + cob(I)alamin[periplasmic space] + H2O =ADP + phosphate + cob(I)alamin[cytosol] cbl1 h, adocbl 4 ADOCBLtonex Adenosylcobalimin transport via ton system ( extermal ) adocbl[e] + h[p] --> adocbl[p] + h[c] ( B3966 AND ( B1252 AND B3005 AND B3006 ) ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] fe3dcit h, adocbl 0 AGt3 silver transport out via proton antiport ag[c] + h[e] --> ag[e] + h[c] ( B0572 AND B0573 AND B0574 AND B0575 ) TRANS-RXN-90 :gene-match H+[periplasmic space] =H+[cytosol] ag 1 AIRC2 phosphoribosylaminoimidazole carboxylase [c] : air + atp + hco3 --> 5caiz + adp + h + pi B0522 RXN0-742 :gene-match 5-aminoimidazole ribonucleotide + ATP + H2O + CO2 = N5-carboxyaminoimidazole ribonucleotide + ADP + phosphate h2o, co2 h, hco3 5 ALAabcpp L-alanine transport via ABC system ( periplasm ) ala-L[p] + atp[c] + h2o[c] --> adp[c] + ala-L[c] + h[c] + pi[c] ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ABC-35-RXN :gene-match ATP + L-leucine[periplasmic space] + H2O =ADP + phosphate + L-leucine[cytosol] leu-L h, ala-L 4 ALAt2pp L-alanine transport in via proton symport ( periplasm ) ala-L[p] + h[p] --> ala-L[c] + h[c] B4208 TRANS-RXN-62A :gene-match H+[periplasmic space] + D-alanine[periplasmic space] =H+[cytosol] + D-alanine[cytosol] ala-D ala-L 1 ALATA_D2 D-alanine transaminase [c] : ala-D + pydx5p --> pyam5p + pyr ( B2551 OR B0870 ) LTAA-RXN :gene-match L-allo-threonine = glycine + acetaldehyde gly, athr-L, acald pydx5p, ala-D, pyam5p, pyr 0 ALATA_L2 alanine transaminase [c] : ala-L + pydx5p --> pyam5p + pyr ( B2551 OR B0870 ) LTAA-RXN :gene-match L-allo-threonine = glycine + acetaldehyde gly, athr-L, acald pydx5p, ala-L, pyam5p, pyr 0 ALCD19 alcohol dehydrogenase ( glycerol ) [c] : glyald + h + nadh <==> glyc + nad B0356 RXN-2962 :gene-match S-hydroxymethylglutathione + NAD(P)+ = S-formylglutathione + NAD(P)H + H+ NAD(P), hmgth, NAD(P)H, Sfglutth glyald, nadh, nad, glyc 1 ALDD3y "aldehyde dehydrogenase ( propanal, NADP )" [c] : h2o + nadp + ppal --> ( 2 ) h + nadph + ppa B3588 RXN0-3962 :gene-match acetaldehyde + NADP+ + H2O -> acetate + NADPH + H+ ac, acald ppa, ppal 4 ALLTAMH allantoate amidohydrolase [c] : alltt + ( 2 ) h + ( 2 ) h2o --> co2 + ( 2 ) nh4 + urdglyc B0516 ALLANTOICASE-RXN :gene-match allantoate + H2O = (S)-ureidoglycolate + urea urea h, co2, nh4 3 AMALT2 Amylomaltase ( maltotetraose ) [c] : malt + maltttr --> glc-D + maltpt B3416 AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC, malttr maltpt, glc-D 2 AMALT3 Amylomaltase ( maltopentaose ) [c] : malt + maltpt --> glc-D + malthx B3416 AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC, malttr, maltttr malthx, maltpt, glc-D 1 AMALT4 Amylomaltase ( maltohexaose ) [c] : malt + malthx --> glc-D + malthp B3416 AMYLOMALT-RXN :gene-match maltotriose + maltose = maltotetraose + beta-D-glucose GLC, malttr, maltttr malthx, malthp, glc-D 1 AMMQLT8 S-adenosylmethione:2-demthylmenaquinole methyltransferase ( menaquinone 8 ) [c] : 2dmmql8 + amet --> ahcys + h + mql8 B3833 ADOMET-DMK-METHYLTRANSFER-RXN :gene-match demethylmenaquinone-8 + S-adenosyl-L-methionine = menaquinone-8 + S-adenosyl-L-homocysteine mqn8 h, mql8 3 AMPMS2 4-amino-2-methyl-5-phosphomethylpyrimidine synthetase [c] : air + h2o + nad --> 4ampm + ( 2 ) for + ( 3 ) h + nadh B3994 PYRIMSYN1-RXN :gene-match 5-aminoimidazole ribonucleotide = hydroxymethylpyrimidine phosphate h, h2o, nadh, for, nad 2 ANHMK "1,6-anhydrous-N-Acetylmuramate kinase" [c] : anhm + atp + h2o --> acmum6p + adp + h B1640 RXN0-4621 :gene-match 1,6-anhMurNAc + ATP = MurNAc-6-P + ADP h, h2o 4 ARGDCpp arginine decarboxylase [p] : arg-L + h --> agm + co2 B2938 ARGDECARBOX-RXN :gene-match L-arginine = CO2 + agmatine h 3 ASNNpp L-asparaginase [p] : asn-L + h2o --> asp-L + nh4 B2957 ASPARAGHYD-RXN :gene-match L-asparagine + H2O = L-aspartate + ammonia AMMONIA nh4 3 ASPabcpp L-aspartate transport via ABC system ( periplasm ) asp-L[p] + atp[c] + h2o[c] --> adp[c] + asp-L[c] + h[c] + pi[c] ( B0655 AND B0654 AND B0653 AND B0652 ) ABC-13-RXN :gene-match ATP + L-glutamate[periplasmic space] + H2O =ADP + phosphate + L-glutamate[cytosol] glu-L h, asp-L 4 ASPO3 L-aspartate oxidase [c] : asp-L + q8 --> h + iasp + q8h2 B2574 L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate o2, h2o2 q8, q8h2, h 2 ASPO4 L-aspartate oxidase [c] : asp-L + mqn8 --> h + iasp + mql8 B2574 L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate o2, h2o2 mqn8, h, mql8 2 ASPO5 L-aspartate oxidase [c] : asp-L + fum --> h + iasp + succ B2574 L-ASPARTATE-OXID-RXN :gene-match O2 + L-aspartate -> H2O2 + iminoaspartate o2, h2o2 h, succ, fum 2 ASR arsenate reductase [c] : aso4 + ( 2 ) gthrd --> aso3 + gthox + h2o ( B3503 AND B1064 ) RXN-982 :gene-match arsenate + a reduced glutaredoxin 2 = arsenite + an oxidized glutaredoxin 2 GLUTAREDOXIN-2-OXIDIZED, GLUTAREDOXIN-2-REDUCED gthrd, h2o, gthox 2 ATHRDHr L-allo-threonine dehydrogenase [c] : athr-L + nadp <==> 2aobut + h + nadph B1539 RXN0-2201 :gene-match L-serine + NADP+ -> 2-aminomalonate-semialdehyde + NADPH + H+ ser-L, 2amsa 2aobut, athr-L 3 BALAt2pp beta-alanine transport in via proton symport ( periplasm ) ala-B[p] + h[p] --> ala-B[c] + h[c] B4208 TRANS-RXN-62A :gene-match H+[periplasmic space] + D-alanine[periplasmic space] =H+[cytosol] + D-alanine[cytosol] ala-D ala-B 1 BETALDHy betaine-aldehyde dehydrogenase [c] : betald + h2o + nadp --> glyb + ( 2 ) h + nadph B0312 BADH-RXN :gene-match betaine aldehyde + NAD+ + H2O -> glycine betaine + NADH nadh, nad nadph, h, nadp 3 BSORx Biotin sulfoxide reductase [c] : btnso + h + nadh --> btn + h2o + nad B3551 R401-RXN :gene-match d-biotin d-sulfoxide + 2 e- + 2 H+ = biotin + H2O E- nadh, nad 4 BSORy Biotin sulfoxide reductase [c] : btnso + h + nadph --> btn + h2o + nadp B3551 R401-RXN :gene-match d-biotin d-sulfoxide + 2 e- + 2 H+ = biotin + H2O E- nadph, nadp 4 BUTSO3abcpp butanesulfonate transport via ABC system ( periplasm ) atp[c] + butso3[p] + h2o[c] --> adp[c] + butso3[c] + h[c] + pi[c] ( ( B0936 AND B0933 AND B0934 ) OR ( B0365 AND B0366 AND B0367 ) ) ABC-64-RXN :gene-match taurine[periplasmic space] + ATP + H2O =taurine[cytosol] + ADP + phosphate taur h, butso3 4 CADVtpp Lysine/Cadaverine antiporter ( periplasm ) 15dap[c] + h[p] + lys-L[p] --> 15dap[p] + h[c] + lys-L[c] B4132 TRANS-RXN-68 :gene-match L-lysine[periplasmic space] + cadaverine[cytosol] + H+[periplasmic space] =L-lysine[cytosol] + cadaverine[periplasmic space] + H+[cytosol] 3 CBIAT Cobinamide adenyltransferase [c] : atp + cbi + h <==> adocbi + pppi B1270 BTUR2-RXN :gene-match ATP + cobinamide + H2O = phosphate + diphosphate + adenosylcobinamide ppi, pi, h2o h, pppi 3 CBItonex Cobinamide transport via ton system ( extermal ) cbi[e] + h[p] --> cbi[p] + h[c] ( B3966 AND ( B1252 AND B3005 AND B3006 ) ) RXN0-1684 :gene-match ferric dicitrate[extracellular space] =ferric dicitrate[periplasmic space] fe3dcit h, cbi 0 CBIuabcpp "Cobinamide transport via ABC system ( uptake, periplasm )" atp[c] + cbi[p] + h2o[c] --> adp[c] + cbi[c] + h[c] + pi[c] ( B1711 AND B1709 AND B0158 ) ABC-5-RXN :gene-match ATP + cob(I)alamin[periplasmic space] + H2O =ADP + phosphate + cob(I)alamin[cytosol] cbl1 h, cbi 4 CBLAT cob( I )alamin adenosyltransferase [c] : atp + cbl1 + h <==> adocbl + pppi B1270 COBALADENOSYLTRANS-RXN :gene-match ATP + cob(I)alamin + H2O = coenzyme B12 + PPPi h2o h 4 CBPS carbamoyl-phosphate synthase ( glutamine-hydrolysing ) [c] : ( 2 ) atp + gln-L + h2o + hco3 --> ( 2 ) adp + cbp + glu-L + ( 2 ) h + pi ( B0032 AND B0033 ) CARBPSYN-RXN :gene-match 2 ATP + L-glutamine + CO2 + 2 H2O = carbamoyl-phosphate + L-glutamate + phosphate + 2 ADP co2 h, hco3 7 CD2t3pp cadmium ( Cd+2 ) transport out via proton antiport ( periplasm ) cd2[c] + h[p] --> cd2[p] + h[c] ( B0752 OR B3915 ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 cd2 1 CD2tpp cadmium ( +2 ) transport in via permease ( no H+ ) cd2[p] --> cd2[c] B3040 RXN0-10 :gene-match Cd2+[periplasmic space] =Cd2+[cytoplasm] 1 CFAS160E "cyclopropane fatty acid synthase ( Phosphatidylethanolamine, n-C16:0 )" [c] : ( 2 ) amet + pe161 --> ( 2 ) ahcys + cpe160 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine cpg180, Phospholipid-Olefinic-Fatty-Acids pe161, h, cpe160 2 CFAS160G "cyclopropane fatty acid synthase ( Phosphatidylglycerol, n-C16:0 )" [c] : ( 2 ) amet + pg161 --> ( 2 ) ahcys + cpg160 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine cpg180, Phospholipid-Olefinic-Fatty-Acids h, pg161, cpg160 2 CFAS180E "cyclopropane fatty acid synthase ( Phosphatidylethanolamine, n-C18:0 )" [c] : ( 2 ) amet + pe181 --> ( 2 ) ahcys + cpe180 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine cpg180, Phospholipid-Olefinic-Fatty-Acids h, pe181, cpe180 2 CFAS180G "cyclopropane fatty acid synthase ( Phosphatidylglycerol, n-C18:0 )" [c] : ( 2 ) amet + pg181 --> ( 2 ) ahcys + cpg180 + ( 2 ) h B1661 2.1.1.79-RXN :gene-match a phospholipid olefinic fatty acid + S-adenosyl-L-methionine = a phospholipid cyclopropane fatty acid + S-adenosyl-L-homocysteine Phospholipid-Olefinic-Fatty-Acids pg181, h 3 CINNDO Cinnamate dioxygenase [c] : cinnm + h + nadh + o2 --> cenchddd + nad ( B2538 AND B2539 AND B2540 AND B2542 ) HCAMULTI-RXN :gene-match 3-phenylpropionate + NADH + O2 + H+ = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ pppn cinnm 5 CLPNS120pp "cardiolipin synthase ( periplasmic, n-C12:0 )" [p] : ( 2 ) pg120 <==> clpn120 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 clpn120, pg120 1 CLPNS140pp "cardiolipin synthase ( periplasmic, n-C14:0 )" [p] : ( 2 ) pg140 <==> clpn140 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 clpn140, pg140 1 CLPNS141pp "cardiolipin synthase ( periplasmic, n-C14:1 )" [p] : ( 2 ) pg141 <==> clpn141 + glyc ( B0789 OR B1249 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 clpn141, pg141 1 CLPNS160pp "cardiolipin synthase ( periplasmic, n-C16:0 )" [p] : ( 2 ) pg160 <==> clpn160 + glyc ( B0789 OR B1249 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 pg160, clpn160 1 CLPNS161pp "cardiolipin synthase ( periplasmic, n-C16:1 )" [p] : ( 2 ) pg161 <==> clpn161 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 pg161, clpn161 1 CLPNS180pp "cardiolipin synthase ( periplasmic, n-C18:0 )" [p] : ( 2 ) pg180 <==> clpn180 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol pg181, clpn181 pg180, clpn180 1 CLPNS181pp "cardiolipin synthase ( periplasmic, n-C18:1 )" [p] : ( 2 ) pg181 <==> clpn181 + glyc ( B1249 OR B0789 ) CARDIOLIPSYN-RXN :gene-match 2 an L-1-phosphatidyl-glycerol -> cardiolipin + glycerol 3 COLIPAabcpp core oligosaccharide lipid A transport via ABC system ( periplasm ) atp[c] + colipa[c] + h2o[c] --> adp[c] + colipa[p] + h[c] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, colipa 4 CPGNabcpp coprogen transport via ABC system ( periplasm ) atp[c] + cpgn[p] + h2o[c] --> adp[c] + cpgn[c] + h[c] + pi[c] ( B0153 AND B0151 AND B0152 ) ABC-11-RXN :gene-match ATP + iron (III) hydroxamate complex[periplasmic space] + H2O =ADP + phosphate + iron (III) hydroxamate complex[cytosol] fe3hox h, cpgn 4 CRNabcpp L-carnitine transport via ABC system ( periplasm ) atp[c] + crn[p] + h2o[c] --> adp[c] + crn[c] + h[c] + pi[c] ( B2677 AND B2678 AND B2679 ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] pro-L h, crn 4 CRNCAL2 Carnitine-CoA Ligase [c] : atp + coa + crn --> adp + crncoa + pi B0037 LCARNCOALIG-RXN :gene-match coenzyme A + L-carnitine = L-carnitinyl-CoA + H2O h2o pi, atp, adp 3 CRNCBCT crotonobetainyl-CoA: carnitine CoA transferase [c] : crn + ctbtcoa <==> crncoa + ctbt B0038 RXN0-3601 :gene-match L-carnitine + gamma-butyrobetainyl-CoA = L-carnitinyl-CoA + gamma-butyrobetaine gbbtn, bbtcoa ctbtcoa, ctbt 2 CRNDabcpp D-carnitine transport via ABC system ( periplasm ) atp[c] + crn-D[p] + h2o[c] --> adp[c] + crn-D[c] + h[c] + pi[c] ( B2677 AND B2678 AND B2679 ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] pro-L h, crn-D 4 CRNDCAL2 D-Carnitine-CoA Ligase [c] : atp + coa + crn-D --> adp + crnDcoa + pi B0037 DCARNCOALIG-RXN :gene-match coenzyme A + D-carnitine = D-carnitinyl-CoA + H2O h2o pi, atp, adp 3 CRNDt2rpp D-carnitine outward transport ( H+ antiport ) crn-D[p] + h[p] <==> crn-D[c] + h[c] B4111 TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] pro-L crn-D 1 CRNt2rpp L-carnitine outward transport ( H+ antiport ) crn[p] + h[p] <==> crn[c] + h[c] B4111 TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] pro-L crn 1 CRNt8pp L-carnitine/D-carnitine antiporter ( periplasm ) crn[p] + crn-D[c] --> crn[c] + crn-D[p] B0040 TRANS-RXN-100 :gene-match gamma-butyrobetaine[cytosol] + L-carnitine[periplasmic space] =gamma-butyrobetaine[periplasmic space] + L-carnitine[cytosol] gbbtn crn-D 1 CTBTabcpp crotonobetaine transport via ABC system ( periplasm ) atp[c] + ctbt[p] + h2o[c] --> adp[c] + ctbt[c] + h[c] + pi[c] ( B2677 AND B2678 AND B2679 ) ABC-26-RXN :gene-match ATP + L-proline[periplasmic space] + H2O =ADP + phosphate + L-proline[cytosol] pro-L h, ctbt 4 CTBTCAL2 Crotonobetaine-CoA Ligase [c] : atp + coa + ctbt --> adp + ctbtcoa + pi B0037 CROTCOALIG-RXN :gene-match coenzyme A + crotono-betaine = crotonobetainyl-CoA + H2O h2o pi, atp, adp 3 CTBTt2rpp cronobetaine outward transport ( H+ antiport ) ctbt[p] + h[p] <==> ctbt[c] + h[c] B4111 TRANS-RXN-29 :gene-match H+[periplasmic space] + L-proline[periplasmic space] =H+[cytosol] + L-proline[cytosol] pro-L ctbt 1 CTPS2 CTP synthase ( glutamine ) [c] : atp + gln-L + h2o + utp --> adp + ctp + glu-L + ( 2 ) h + pi B2780 CTPSYN-RXN :gene-match ATP + UTP + ammonia -> ADP + phosphate + CTP AMMONIA h, h2o, glu-L, gln-L 5 CU1Opp Cuprous Oxidase ( Cu+1 ) [p] : ( 4 ) cu + ( 4 ) h + o2 --> ( 4 ) cu2 + ( 2 ) h2o B0123 RXN0-2945 :gene-match 4 Cu+ + 4 H+ + O2 -> 4 Cu2+ + 2 H2O 5 CU2tpp copper transport in via permease ( no H+ ) cu2[p] --> cu2[c] B3040 RXN0-14 :gene-match Cu2+[periplasmic space] =Cu2+[cytoplasm] 1 CUt3 copper transport out via proton antiport cu[c] + h[e] --> cu[e] + h[c] ( B0572 AND B0573 AND B0574 AND B0575 ) TRANS-RXN-90 :gene-match H+[periplasmic space] =H+[cytosol] cu 1 CYANSTpp Cyanide sulfurtransferase ( periplasmic ) [p] : cyan + tsul --> h + so3 + tcynt B1308 THIOSULFATE-SULFURTRANSFERASE-RXN :gene-match hydrogen cyanide + thiosulfate = thiocyanate + sulfite h 4 CYNTAH Cyanate aminohydrolase [c] : cynt + ( 3 ) h + hco3 --> ( 2 ) co2 + nh4 B0340 4.3.99.1-RXN :gene-match HCO3- + cyanate = carbamate + CO2 CARBAMATE h, nh4 3 CYSabc2pp L-cysteine export via ABC system ( cytoplasm to periplasm ) atp[c] + cys-L[c] + h2o[c] --> adp[c] + cys-L[p] + h[c] + pi[c] ( B0886 AND B0887 ) RXN0-3 :gene-match L-cysteine[cytoplasm] + ATP + H2O =L-cysteine[periplasmic space] + ADP + phosphate h 5 CYTBD2pp cytochrome oxidase bd ( menaquinol-8: 2 protons ) ( periplasm ) ( 2 ) h[c] + mql8[c] + ( 0.5 ) o2[c] --> ( 2 ) h[p] + h2o[c] + mqn8[c] ( B0978 AND B0979 ) CYT-UBIQUINOL-OXID-RXN :gene-match ubiquinol-8 + O2 = ubiquinone-8 + 2 H2O q8, q8h2 mqn8, h, mql8 2 DAAD D-Amino acid dehydrogenase [c] : ala-D + fad + h2o --> fadh2 + nh4 + pyr B1189 DALADEHYDROG-RXN :gene-match D-alanine + H2O = pyruvate + ammonia AMMONIA nh4, fadh2, fad 3 DHORD2 dihydoorotic acid dehydrogenase ( quinone8 ) [c] : dhor-S + q8 --> orot + q8h2 B0945 DIHYDROOROTOX-RXN :gene-match O2 + dihydroorotate = H2O2 + orotate o2, h2o2 q8, q8h2 2 DHORD5 dihydroorotic acid ( menaquinone-8 ) [c] : dhor-S + mqn8 --> mql8 + orot B0945 DIHYDROOROTOX-RXN :gene-match O2 + dihydroorotate = H2O2 + orotate o2, h2o2 mqn8, mql8 2 DKGLCNR2x "2,5-diketo-D-gluconate reductase ( NADH )" [c] : 25dkglcn + h + nadh --> 5dglcn + nad B3553 YIAE1-RXN :gene-match 2,5-didehydro-D-gluconate + NADPH = 5-ketogluconate + NADP+ nadph, nadp h, nadh, nad 2 D-LACt2pp D-lactate transport via proton symport ( periplasm ) h[p] + lac-D[p] <==> h[c] + lac-D[c] ( B3603 OR B2975 ) TRANS-RXN-105 :gene-match H+[periplasmic space] + glycolate[periplasmic space] =H+[cytosol] + glycolate[cytosol] glyclt lac-D 1 DMQMT 3-Dimethylubiquinonol 3-methyltransferase [c] : 2omhmbl + amet --> ahcys + h + q8h2 B2232 DHHB-METHYLTRANSFER-RXN :gene-match 3-demethylubiquinone-8 + S-adenosyl-L-methionine = ubiquinone-8 + S-adenosyl-L-homocysteine q8 h, q8h2 3 DMSOR1 Dimethyl sulfoxide reductase ( Menaquinol 8 ) [c] : dmso + mql8 --> dms + h2o + mqn8 ( ( B1587 AND B1588 AND B1589 AND B1590 ) OR ( B0894 AND B0895 AND B0896 ) ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 h 5 DMSOR1pp Dimethyl sulfoxide reductase ( Menaquinol 8 ) ( periplasm ) dmso[p] + mql8[c] --> dms[p] + h2o[p] + mqn8[c] ( B1872 AND B1873 ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, h, tmao, Cytochromes-C, tma mqn8, dmso, mql8, dms 1 DMSOR2 Dimethyl sulfoxide reductase ( Demethylmenaquinol 8 ) [c] : 2dmmql8 + dmso --> 2dmmq8 + dms + h2o ( B0894 AND B0895 AND B0896 ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 mqn8, h, mql8 2dmmq8, 2dmmql8 3 DMSOR2pp Dimethyl sulfoxide reductase ( Demethylmenaquinol 8 ) ( periplasm ) 2dmmql8[c] + dmso[p] --> 2dmmq8[c] + dms[p] + h2o[p] ( B1872 AND B1873 ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, h, tmao, Cytochromes-C, tma 2dmmq8, dmso, 2dmmql8, dms 1 DSERDHr D-serine dehydrogenase [c] : nadp + ser-D <==> 2amsa + h + nadph B1539 RXN0-2201 :gene-match L-serine + NADP+ -> 2-aminomalonate-semialdehyde + NADPH + H+ ser-L ser-D 4 EAR121x enoyl-[acyl-carrier-protein] reductase ( NADH ) ( n-C12:1 ) [c] : h + nadh + t3c5ddeceACP --> cddec5eACP + nad B1288 ENOYL-ACP-REDUCT-NADH-RXN :gene-match an acyl-ACP + NAD+ -> NADH + a trans-delta2-enoyl-acyl-ACP tdeACP, tpalm2eACP t3c5ddeceACP, h, cddec5eACP 2 ECOAH1 3-hydroxyacyl-CoA dehydratase ( 3-hydroxybutanoyl-CoA ) [c] : 3hbcoa <==> b2coa + h2o ( B3846 OR B2341 ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hbcoa, b2coa 1 ECOAH2 3-hydroxyacyl-CoA dehydratase ( 3-hydroxyhexanoyl-CoA ) [c] : 3hhcoa <==> h2o + hx2coa ( B3846 OR B2341 ) ENOYL-COA-HYDRAT-RXN :gene-match H2O + a trans-2-enoyl-CoA = an L-3-hydroxyacyl-CoA 3htdcoa, td2coa 3hhcoa, hx2coa 1 ENTERES2 Enterochelin Esterase ( Fe containing ) [c] : feenter + ( 3 ) h2o --> ( 3 ) 23dhbzs + fe3 + ( 3 ) h B0585 RXN0-1661 :gene-match enterobactin + 3 H2O -> 3 2,3-dihydroxybenzoylserine enter feenter, h, fe3 2 F6Pt6_2pp Fructose-6-phosphate transport via phosphate antiport ( periplasm ) f6p[p] + ( 2 ) pi[c] --> f6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h, g6p pi, f6p 0 FA80ACPHi fatty-acyl-ACP hydrolase [c] : h2o + ocACP --> ACP + h + octa B0404 3.1.4.14-RXN :gene-match H2O + acyl carrier protein = apo-[acyl-carrier protein] + pantetheine 4'-phosphate apo-ACP, pan4p h, ocACP, octa 2 FACOAE120 fatty-acid-CoA thioesterase ( dodecanoate ) [c] : ddcacoa + h2o --> coa + ddca + h B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa ddcacoa, ddca, h 2 FACOAE180 fatty-acid-CoA thioesterase ( octadecanoate ) [c] : h2o + stcoa --> coa + h + ocdca B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, stcoa, ocdca 2 FACOAE181 fatty-acid-CoA thioesterase ( octadecenoate ) [c] : h2o + odecoa --> coa + h + ocdcea B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, odecoa, ocdcea 2 FACOAE60 fatty-acid-CoA thioesterase ( hexanoate ) [c] : h2o + hxcoa --> coa + h + hxa B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa h, hxa, hxcoa 2 FACOAE80 fatty-acid-CoA thioesterase ( octanoate ) [c] : h2o + occoa --> coa + h + octa B0452 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A a fatty acid, tdecoa occoa, h, octa 2 FACOAL100t2pp fatty-acid-CoA ligase ( decanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + dca[p] + h[p] --> amp[c] + dcacoa[c] + h[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, dcacoa, dca 4 FACOAL120t2pp fatty-acid-CoA ligase ( dodecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + ddca[p] + h[p] --> amp[c] + ddcacoa[c] + h[c] + ppi[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, ddca, ddcacoa 4 FACOAL140t2pp fatty-acid-CoA ligase ( tetradecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ttdca[p] --> amp[c] + h[c] + ppi[c] + tdcoa[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa ttdca, tdcoa, h 4 FACOAL160t2pp fatty-acid-CoA ligase ( hexadecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + hdca[p] --> amp[c] + h[c] + pmtcoa[c] + ppi[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa hdca, h, pmtcoa 4 FACOAL161t2pp fatty-acid-CoA ligase ( hexadecenoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + hdcea[p] --> amp[c] + h[c] + hdcoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, hdcoa, hdcea 4 FACOAL180t2pp fatty-acid-CoA ligase ( octadecanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ocdca[p] --> amp[c] + h[c] + ppi[c] + stcoa[c] ( B1701 OR B1805 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, stcoa, ocdca 4 FACOAL181t2pp fatty-acid-CoA ligase ( octadecenoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + ocdcea[p] --> amp[c] + h[c] + odecoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, odecoa, ocdcea 4 FACOAL60t2pp fatty-acid-CoA ligase ( hexanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + hxa[p] --> amp[c] + h[c] + hxcoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa h, hxa, hxcoa 4 FACOAL80t2pp fatty-acid-CoA ligase ( octanoate transport via vectoral Co-A coupling ) atp[c] + coa[c] + h[p] + octa[p] --> amp[c] + h[c] + occoa[c] + ppi[c] ( B1805 OR B1701 ) ACYLCOASYN-RXN :gene-match coenzyme A + a fatty acid + ATP = an acyl-CoA + diphosphate + AMP a fatty acid, tdecoa occoa, h, octa 4 FADRx FAD reductase [c] : fad + h + nadh --> fadh2 + nad B3844 FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), fmn, fmnh2, NAD(P)H fadh2, nadh, fad, nad 1 FADRx2 FAD reductase [c] : fad + h + nadph --> fadh2 + nadp ( B2763 AND B2764 ) SULFITE-REDUCT-RXN :gene-match 3 H2O + 3 NADP+ + hydrogen sulfide = 3 NADPH + sulfite h2o, so3, h2s h, fadh2, fad 2 FDH4pp formate dehydrogenase ( quinone-8 ) ( periplasm ) for[p] + ( 2 ) h[c] + q8[c] --> co2[c] + h[p] + q8h2[c] ( ( B3892 AND B3893 AND B3894 ) OR ( B1474 AND B1475 AND B1476 ) ) FORMATEDEHYDROG-RXN :gene-match formate + menaquinone-8 = CO2 + menaquinol mqn8, mql8 h, q8h2, q8 2 FDH5pp Formate Dehydrogenase ( menaquinone-8 ) ( periplasm ) for[p] + ( 2 ) h[c] + mqn8[c] --> co2[c] + h[p] + mql8[c] ( ( B1474 AND B1475 AND B1476 ) OR ( B3892 AND B3893 AND B3894 ) ) FORMATEDEHYDROG-RXN :gene-match formate + menaquinone-8 = CO2 + menaquinol h 4 FDMO FMNH2-dependent monooxygenase [c] : fmnh2 + isetac + o2 --> fmn + gcald + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac h, isetac, gcald 5 FDMO2 FMNH2-dependent monooxygenase ( methanesulfonate ) [c] : fmnh2 + mso3 + o2 --> fald + fmn + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac h, mso3, fald 5 FDMO3 FMNH2-dependent monooxygenase ( ethanesulfonate ) [c] : ethso3 + fmnh2 + o2 --> acald + fmn + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac ethso3, h, acald 5 FDMO4 FMNH2-dependent monooxygenase ( butanesulfonate ) [c] : butso3 + fmnh2 + o2 --> btal + fmn + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde, sulfac h, butso3, btal 5 FDMO6 FMNH2-dependent monooxygenase ( sulfoacetate ) [c] : fmnh2 + o2 + sulfac --> fmn + glx + h + h2o + so3 B0935 RXN0-280 :gene-match an alkanesulfonate + O2 + FMNH2 = an aldehyde + sulfite + H2O + FMN an aldehyde glx, h 6 FE2abcpp iron ( II ) transport via ABC system ( periplasm ) atp[c] + fe2[p] + h2o[c] --> adp[c] + fe2[c] + h[c] + pi[c] B3409 TRANS-RXN-8 :gene-match Fe2+[periplasmic space] =Fe2+[cytosol] h, h2o, pi, atp, adp 1 FE3DCITabcpp iron transport from ferric-dicitrate via ABC system ( periplasm ) atp[c] + fe3dcit[p] + h2o[c] --> adp[c] + ( 2 ) cit[c] + fe3[c] + h[c] + pi[c] ( B4290 AND B4289 AND B4288 AND B4287 ) ABC-9-RXN :gene-match ATP + ferric dicitrate[periplasmic space] + H2O =ADP + phosphate + ferric dicitrate[cytosol] h, fe3, cit 5 FE3DHBZSabcpp "ferric 2,3-dihydroxybenzoylserine transport via ABC system ( periplasm )" atp[c] + fe3dhbzs[p] + h2o[c] --> adp[c] + fe3dhbzs[c] + h[c] + pi[c] ( B0592 AND B0588 AND B0590 AND B0589 ) ABC-10-RXN :gene-match ATP + ferric enterobactin[periplasmic space] + H2O =ADP + phosphate + ferric enterobactin[cytosol] feenter fe3dhbzs, h 4 FE3Ri Fe( III ) reduction [c] : fadh2 + ( 2 ) fe3 --> fad + ( 2 ) fe2 + ( 2 ) h B3844 FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), fmn, fmnh2, NAD(P)H fadh2, fe2, fe3, fad 1 FEENTERtpp enterochelin transport ( secretion ) enter[c] + h[p] --> enter[p] + h[c] B0591 RXN0-8 :gene-match enterobactin[cytoplasm] + H+[extracellular space] =enterobactin[extracellular space] + H+[cytoplasm] 2 FEROpp ferroxidase [p] : ( 4 ) fe2 + ( 4 ) h + o2 --> ( 4 ) fe3 + ( 2 ) h2o B0123 RXN0-1483 :gene-match 4 Fe2+ + 4 H+ + O2 -> 4 Fe3+ + 2 H2O 5 FLVR( NAD ) flavin reductase ( NAD ) [c] : h + nadh + ribflv --> nad + rbflvrd B3844 FMNREDUCT-RXN :gene-match FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+ NAD(P), fmn, fmnh2, NAD(P)H nadh, rbflvrd, nad, ribflv 1 FMETTRS Methionyl-tRNA formyltransferase [c] : 10fthf + mettrna --> fmettrna + h + thf B3288 METHIONYL-TRNA-FORMYLTRANSFERASE-RXN :gene-match N10-formyl-THF + L-methionyl-tRNAfmet + H2O = tetrahydrofolate + N-formyl-L-methionyl-tRNAfmet L-methionyl-tRNAfmet, h2o, N-formyl-L-methionyl-tRNAfmet mettrna, h, fmettrna 2 FRD2 fumarate reductase [c] : fum + mql8 --> mqn8 + succ ( B4151 AND B4152 AND B4153 AND B4154 ) R601-RXN :gene-match fumarate + menaquinol + 2 H+ -> succinate + menaquinone-8 h 4 FRD3 fumarate reductase [c] : 2dmmql8 + fum --> 2dmmq8 + succ ( B4151 AND B4152 AND B4153 AND B4154 ) R601-RXN :gene-match fumarate + menaquinol + 2 H+ -> succinate + menaquinone-8 mqn8, h, mql8 2dmmq8, 2dmmql8 2 G1PPpp Glucose-1-phosphatase [p] : g1p + h2o --> glc-D + pi B1002 GLUCOSE-1-PHOSPHAT-RXN :gene-match H2O + alpha-D-glucose 1-phosphate -> phosphate + beta-D-glucose GLC glc-D 3 G2PPpp glycerol 2-phosphate phosphatase ( periplasmic ) [p] : glyc2p + h2o --> glyc + pi B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters glyc2p, glyc 2 G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system ( periplasm ) atp[c] + g3pc[p] + h2o[c] --> adp[c] + g3pc[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p g3pc, h 4 G3PD6 glycerol-3-phosphate dehydrogenase ( menaquinone-8 ) [c] : glyc3p + mqn8 --> dhap + mql8 ( B2241 AND B2242 AND B2243 ) GLYC3PDEHYDROG-RXN :gene-match sn-glycerol-3-phosphate + ubiquinone-8 = dihydroxy-acetone-phosphate + ubiquinol-8 q8, q8h2 mqn8, mql8 2 G3PD7 glycerol-3-phosphate dehydrogenase ( demethylmenaquinone-8 ) [c] : 2dmmq8 + glyc3p --> 2dmmql8 + dhap ( B2241 AND B2242 AND B2243 ) GLYC3PDEHYDROG-RXN :gene-match sn-glycerol-3-phosphate + ubiquinone-8 = dihydroxy-acetone-phosphate + ubiquinol-8 q8, q8h2 2dmmq8, 2dmmql8 2 G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system ( periplasm ) atp[c] + g3pe[p] + h2o[c] --> adp[c] + g3pe[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3pe 4 G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system ( periplasm ) atp[c] + g3pg[p] + h2o[c] --> adp[c] + g3pg[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3pg 4 G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system ( periplasm ) atp[c] + g3pi[p] + h2o[c] --> adp[c] + g3pi[c] + h[c] + pi[c] ( B3452 AND B3453 AND B3450 AND B3451 ) ABC-34-RXN :gene-match ATP + sn-glycerol-3-phosphate[periplasmic space] + H2O =ADP + phosphate + sn-glycerol-3-phosphate[cytosol] glyc3p h, g3pi 4 G6Pt6_2pp Glucose-6-phosphate transport via phosphate antiport ( periplasm ) g6p[p] + ( 2 ) pi[c] --> g6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h pi 1 GAL1PPpp D-galactose 1-phosphatase [p] : gal1p + h2o --> gal + pi B1002 GLUCOSE-1-PHOSPHAT-RXN :gene-match H2O + alpha-D-glucose 1-phosphate -> phosphate + beta-D-glucose GLC, g1p gal, gal1p 2 GALM2pp aldose-1-epimerase [p] : gal-bD --> gal B0756 ALDOSE1EPIM-RXN :gene-match beta-D-galactose = alpha-D-galactose ALPHA-D-GALACTOSE gal 1 GAM6Pt6_2pp D-Glucosamine 6-phosphate transport via phosphate antiport ( periplasm ) gam6p[p] + ( 2 ) pi[c] --> gam6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h, g6p gam6p, pi 0 GLCabcpp D-glucose transport via ABC system ( periplasm ) atp[c] + glc-D[p] + h2o[c] --> adp[c] + glc-D[c] + h[c] + pi[c] ( B2149 AND B2150 AND B2148 ) ABC-18-RXN :gene-match ATP + beta-D-galactose[periplasmic space] + H2O =ADP + phosphate + beta-D-galactose[cytosol] gal-bD h, glc-D 4 GLCATr D-glucose O-acetyltransferase [c] : accoa + glc-D <==> acglc-D + coa B0459 MALTACETYLTRAN-RXN :gene-match maltose + acetyl-CoA = acetylmaltose + coenzyme A acmalt, malt acglc-D, glc-D 2 GLCDpp Glucose dehydrogenase ( ubiquinone-8 as acceptor ) ( periplasm ) glc-D[p] + h2o[p] + q8[c] --> glcn[p] + h[p] + q8h2[c] B0124 GLUCDEHYDROG-RXN :gene-match beta-D-glucose + a ubiquinone = glucono-delta-lactone + a ubiquinol Ubiquinones, GLC, GLC-D-LACTONE, Ubiquinols q8, glcn, q8h2, h2o, h, glc-D 0 GLCNt2rpp "D-gluconate transport via proton symport, reversible ( periplasm )" glcn[p] + h[p] <==> glcn[c] + h[c] ( B3415 OR B4265 OR B4321 OR B4476 ) TRANS-RXN-81 :gene-match H+[periplasmic space] + fructuronate[periplasmic space] =H+[cytosol] + fructuronate[cytosol] fruur glcn 1 GLCP glycogen phosphorylase [c] : glycogen + pi --> g1p ( B3428 OR B3417 ) MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790, maltttr glycogen 2 GLCP2 glycogen phosphorylase [c] : bglycogen + pi --> g1p ( B3428 OR B3417 ) GLYMALTOPHOSPHORYL-RXN :gene-match a glycogen + phosphate = maltotetraose + alpha-D-glucose 1-phosphate maltttr 3 GLCS1 glycogen synthase ( ADPGlc ) [c] : adpglc --> adp + glycogen + h B3429 GLYCOGENSYN-RXN :gene-match (1,4-alpha-D-glucosyl)(N) + ADP-D-glucose = ADP + (1,4-alpha-D-glucosyl)(n+1) 14glucan h, glycogen 2 GLCt2pp D-glucose transport in via proton symport ( periplasm ) glc-D[p] + h[p] --> glc-D[c] + h[c] B2943 TRANS-RXN-21 :gene-match H+[periplasmic space] + beta-D-galactose[periplasmic space] =H+[cytosol] + beta-D-galactose[cytosol] gal-bD glc-D 1 GLUDy glutamate dehydrogenase ( NADP ) [c] : glu-L + h2o + nadp <==> akg + h + nadph + nh4 B1761 GLUTDEHYD-RXN :gene-match L-glutamate + H2O + NADP+ = alpha-ketoglutarate + ammonia + NADPH AMMONIA h, nh4 5 GLUNpp glutaminase [p] : gln-L + h2o --> glu-L + nh4 B2957 ASPARAGHYD-RXN :gene-match L-asparagine + H2O = L-aspartate + ammonia asn-L, AMMONIA, asp-L nh4, glu-L, gln-L 1 GLYALDtpp Glyceraldehyde facilitated diffusion ( periplasm ) glyald[p] <==> glyald[c] B3927 TRANS-RXN-131 :gene-match glycerol[periplasmic space] =glycerol[cytosol] glyc glyald 0 GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter ( periplasm ) glyc3p[p] + pi[c] --> glyc3p[c] + pi[p] B2240 TRANS-RXN-22 :gene-match H+[periplasmic space] + sn-glycerol-3-phosphate[periplasmic space] =H+[cytosol] + sn-glycerol-3-phosphate[cytosol] h pi 1 GLYCLTt4pp glycolate transport via sodium symport ( periplasm ) glyclt[p] + na1[p] --> glyclt[c] + na1[c] B4067 RXN0-5111 :gene-match glycolate[periplasmic space] =glycolate[cytosol] na1 1 GLYt4pp glycine transport in via sodium symport ( periplasm ) gly[p] + na1[p] --> gly[c] + na1[c] B0007 TRANS-RXN-125 :gene-match Na+[periplasmic space] + L-alanine[periplasmic space] =Na+[cytosol] + L-alanine[cytosol] ala-L gly 1 GMHEPPA "D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase" [c] : gmhep17bp + h2o --> gmhep1p + pi B0200 RXN0-4361 :gene-match D-beta-D-heptose-1,7-bisphosphate = D-beta-D-heptose-1-phosphate + phosphate h2o 3 GP4GH Gp4G hydrolase [c] : gp4g + h2o --> ( 2 ) gdp + ( 2 ) h B0049 3.6.1.41-RXN :gene-match H2O + P(1),P(4)-bis(5'-adenosyl)tetraphosphate -> 2 ADP ap4a, adp gdp, h, gp4g 1 GPDDA1pp Glycerophosphodiester phosphodiesterase ( Glycerophosphocholine ) [p] : g3pc + h2o --> chol + glyc3p + h B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols g3pc, chol, h 2 GPDDA2 Glycerophosphodiester phosphodiesterase ( Glycerophosphoethanolamine ) [c] : g3pe + h2o --> etha + glyc3p + h B3449 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols h, etha, g3pe 2 GPDDA2pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoethanolamine ) [p] : g3pe + h2o --> etha + glyc3p + h B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols h, etha, g3pe 2 GPDDA4 Glycerophosphodiester phosphodiesterase ( Glycerophosphoglycerol ) [c] : g3pg + h2o --> glyc + glyc3p + h B3449 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols glyc, g3pg, h 2 GPDDA4pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoglycerol ) [p] : g3pg + h2o --> glyc + glyc3p + h B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols glyc, g3pg, h 2 GPDDA5pp Glycerophosphodiester phosphodiesterase ( Glycerophosphoinositol ) [p] : g3pi + h2o --> glyc3p + h + inost B2239 GLYCPDIESTER-RXN :gene-match H2O + a glycerophosphodiester -> an alcohol + sn-glycerol-3-phosphate a glycerophosphodiester, Alcohols inost, h, g3pi 2 GTHRDabc2pp glutathione export via ABC system ( cytoplasm to periplasm ) atp[c] + gthrd[c] + h2o[c] --> adp[c] + gthrd[p] + h[c] + pi[c] ( B0886 AND B0887 ) RXN0-21 :gene-match glutathione[cytoplasm] + ATP + H2O =glutathione[periplasmic space] + ADP + phosphate h 5 GTHRDabcpp Reduced glutathione via ABC system ( periplasm ) atp[c] + gthrd[p] + h2o[c] --> adp[c] + gthrd[c] + h[c] + pi[c] ( B0829 AND B0830 AND B0831 AND B0832 ) RXN0-11 :gene-match glutathione[periplasmic space] + ATP + H2O =glutathione[cytoplasm] + ADP + phosphate h 5 GUAt2pp guanine transport in via proton symport ( periplasm ) gua[p] + h[p] --> gua[c] + h[c] B3654 RXN-5076 :gene-match xanthine[periplasmic space] + H+[periplasmic space] =xanthine[cytosol] + H+[cytosol] xan gua 1 HACD2i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxohexanoyl-CoA ) [c] : 3hhcoa + nad --> 3ohcoa + h + nadh ( B3846 OR B2341 ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3hhcoa, 3ohcoa 2 HACD7i 3-hydroxyacyl-CoA dehydrogenase ( 3-oxohexadecanoyl-CoA ) [c] : 3hhdcoa + nad --> 3ohdcoa + h + nadh ( B3846 OR B2341 ) OHACYL-COA-DEHYDROG-RXN :gene-match NAD+ + an L-3-hydroxyacyl-CoA = NADH + a 3-ketoacyl-CoA 3otdcoa, 3htdcoa h, 3ohdcoa, 3hhdcoa 2 HCO3E HCO3 equilibration reaction [c] : co2 + h2o <==> h + hco3 ( B0339 OR B0126 ) CARBODEHYDRAT-RXN :gene-match H2CO3 = H2O + CO2 H2CO3 h, hco3 2 HG2t3pp mercury ( Hg+2 ) transport out via proton antiport ( periplasm ) h[p] + hg2[c] --> h[c] + hg2[p] B3915 TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 hg2 1 HISt2rpp L-histidine reversible transport via proton symport ( periplasm ) h[p] + his-L[p] <==> h[c] + his-L[c] B0112 TRANS-RXN-56 :gene-match H+[periplasmic space] + L-phenylalanine[periplasmic space] =H+[cytosol] + L-phenylalanine[cytosol] phe-L his-L 1 HISTD histidinol dehydrogenase [c] : h2o + histd + ( 2 ) nad --> ( 3 ) h + his-L + ( 2 ) nadh B2020 HISTALDEHYD-RXN :gene-match histidinal + NAD+ + H2O -> L-histidine + NADH HISTIDINAL h, histd 4 HXCT Acetyl-CoA:hexanoate-CoA transferase [c] : accoa + hxa --> ac + hxcoa ( B2221 AND B2222 ) ACECOATRANS-RXN :gene-match an acyl-CoA + acetate = a fatty acid + acetyl-CoA a fatty acid, tdecoa hxa, hxcoa 2 HYD1pp hydrogenase ( ubiquinone-8: 2 protons ) ( periplasm ) ( 2 ) h[c] + h2[c] + q8[c] --> ( 2 ) h[p] + q8h2[c] ( ( B0972 AND B0973 AND B0974 ) OR ( B2994 AND B2997 ) OR ( B2719 AND B2720 AND B2721 AND B2722 AND B2723 AND B2724 ) ) RXN0-3283 :gene-match 2 H+ + 2 e- -> H2 E- q8, q8h2 2 HYD3pp Hydrogenase ( Demethylmenaquinone-8: 2 protons ) ( periplasm ) 2dmmq8[c] + ( 2 ) h[c] + h2[c] --> 2dmmql8[c] + ( 2 ) h[p] ( ( B0972 AND B0973 AND B0974 ) OR ( B2994 AND B2997 ) ) RXN0-4141 :gene-match H2 + an acceptor = 2 H+ + a reduced acceptor Donor-H2, Acceptor 2dmmq8, 2dmmql8 2 ILEt2rpp L-isoleucine reversible transport via proton symport ( periplasm ) h[p] + ile-L[p] <==> h[c] + ile-L[c] B0401 TRANS-RXN-126 :gene-match Na+[periplasmic space] + L-isoleucine[periplasmic space] =Na+[cytosol] + L-isoleucine[cytosol] na1 h 1 ISETACabcpp isethionate transport via ABC system ( periplasm ) atp[c] + h2o[c] + isetac[p] --> adp[c] + h[c] + isetac[c] + pi[c] ( ( B0365 AND B0366 AND B0367 ) OR ( B0936 AND B0933 AND B0934 ) ) ABC-64-RXN :gene-match taurine[periplasmic space] + ATP + H2O =taurine[cytosol] + ADP + phosphate taur h, isetac 4 K2L4Aabcpp KDO( 2 )-lipid IV A transport via ABC system ( periplasm ) atp[c] + h2o[c] + kdo2lipid4[c] --> adp[c] + h[c] + kdo2lipid4[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, kdo2lipid4 4 KAT2 3-ketoacyl-CoA thiolase [c] : 3ohcoa + coa --> accoa + btcoa ( B3845 OR B2342 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa btcoa, 3ohcoa 2 KAT3 3-ketoacyl-CoA thiolase [c] : 3oocoa + coa --> accoa + hxcoa ( B2342 OR B3845 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa hxcoa, 3oocoa 2 KAT4 3-ketoacyl-CoA thiolase [c] : 3odcoa + coa --> accoa + occoa ( B2342 OR B3845 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa occoa, 3odcoa 2 KAT6 3-ketoacyl-CoA thiolase [c] : 3otdcoa + coa --> accoa + ddcacoa ( B3845 OR B2342 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A tdecoa ddcacoa 3 KAT8 3-ketoacyl-CoA thiolase [c] : 3oodcoa + coa --> accoa + pmtcoa ( B3845 OR B2342 ) KETOACYLCOATHIOL-RXN :gene-match an acyl-CoA + acetyl-CoA = a 3-ketoacyl-CoA + coenzyme A 3otdcoa, tdecoa pmtcoa, 3oodcoa 2 LEUt2rpp L-leucine reversible transport via proton symport ( periplasm ) h[p] + leu-L[p] <==> h[c] + leu-L[c] B0401 TRANS-RXN-126B :gene-match Na+[periplasmic space] + L-leucine[periplasmic space] =Na+[cytosol] + L-leucine[cytosol] na1 h 1 LIPACabcpp lipid ( cold ) A transport via ABC system ( periplasm ) atp[c] + h2o[c] + lipa_cold[c] --> adp[c] + h[c] + lipa_cold[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides lipa_cold, h 4 LIPAHTex Lipid A:hexadecanoate transferase ( n-C16:0 ) ( extracellular membrane ) [e] : h + hdca + lipa --> h2o + halipa B0622 RXN0-1842 :gene-match a phospholipid + KDO2-lipid A -> hepta-acylated KDO2-lipid A + a glycerol ester A-GLYCEROL-ESTER, apg181 hdca, h, h2o 2 L-LACD2 L-Lactate dehydrogenase ( ubiquinone ) [c] : lac-L + q8 --> pyr + q8h2 B3605 L-LACTDEHYDROGFMN-RXN :gene-match a quinone + lactate = a hydroquinone + pyruvate a quinone, a reduced quinone q8, q8h2 2 LPLIPAL1A120pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C12:0 ) ( periplasm )" [p] : 1ddecg3p + h2o --> ddca + glyc3p + h B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, ddca, 1ddecg3p 1 LPLIPAL1A140pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C14:0 ) ( periplasm )" [p] : 1tdecg3p + h2o --> glyc3p + h + ttdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1tdecg3p, ttdca 1 LPLIPAL1A160pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C16:0 ) ( periplasm )" [p] : 1hdecg3p + h2o --> glyc3p + h + hdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa hdca, 1hdecg3p, glyc3p, h 1 LPLIPAL1A161pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C16:1 ) ( periplasm )" [p] : 1hdec9eg3p + h2o --> glyc3p + h + hdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, hdcea, 1hdec9eg3p 1 LPLIPAL1A180pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C18:0 ) ( periplasm )" [p] : 1odecg3p + h2o --> glyc3p + h + ocdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1odecg3p, ocdca 1 LPLIPAL1A181pp "Lysophospholipase L1 ( 2-acylglycerophosphotidate, n-C18:1 ) ( periplasm )" [p] : 1odec11eg3p + h2o --> glyc3p + h + ocdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, glyc3p, 1odec11eg3p, ocdcea 1 LPLIPAL1E160pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C16:0 ) ( periplasm )" [p] : 1agpe160 + h2o --> g3pe + h + hdca B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa hdca, h, 1agpe160, g3pe 1 LPLIPAL1E161pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C16:1 ) ( periplasm )" [p] : 1agpe161 + h2o --> g3pe + h + hdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpe161, hdcea, g3pe 1 LPLIPAL1E181pp "Lysophospholipase L1 ( 2-acylglycerophosphoethanolamine, n-C18:1 ) ( periplasm )" [p] : 1agpe181 + h2o --> g3pe + h + ocdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpe181, ocdcea, g3pe 1 LPLIPAL1G181pp "Lysophospholipase L1 ( 2-acylglycerophosphoglycerol, n-C18:1 ) ( periplasm )" [p] : 1agpg181 + h2o --> g3pg + h + ocdcea B0494 THIOESTER-RXN :gene-match an acyl-CoA + H2O -> a fatty acid + coenzyme A coa, a fatty acid, tdecoa h, 1agpg181, ocdcea, g3pg 1 LPLIPAL2ATE120 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C12:0 )" [c] : 2agpe120 + pg120 --> apg120 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe120, g3pe, pg120, apg120 0 LPLIPAL2ATE140 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:0 )" [c] : 2agpe140 + pg140 --> apg140 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe140, apg140, pg140, g3pe 0 LPLIPAL2ATE141 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:1 )" [c] : 2agpe141 + pg141 --> apg141 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates apg141, 2agpe141, pg141, g3pe 0 LPLIPAL2ATE160 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:0 )" [c] : 2agpe160 + pg160 --> apg160 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg160, 2agpe160, apg160, g3pe 0 LPLIPAL2ATE161 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:1 )" [c] : 2agpe161 + pg161 --> apg161 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg161, 2agpe161, apg161, g3pe 0 LPLIPAL2ATE180 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:0 )" [c] : 2agpe180 + pg180 --> apg180 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg180, 2agpe180, apg180, g3pe 0 LPLIPAL2ATE181 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:1 )" [c] : 2agpe181 + pg181 --> apg181 + g3pe B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg181, apg181, 2agpe181, g3pe 0 LPLIPAL2ATG160 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:0 )" [c] : 2agpg160 + pg160 --> apg160 + g3pg B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates pg160, 2agpg160, g3pg, apg160 0 LPLIPAL2ATG161 "Lysophospholipase L2 ( acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:1 )" [c] : 2agpg161 + pg161 --> apg161 + g3pg B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, h2o, 2-Acylglycero-Phosphocholines, Carboxylates g3pg, apg161, pg161, 2agpg161 0 LPLIPAL2E120 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C12:0 )" [c] : 2agpe120 + h2o --> ddca + g3pe + h B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpe120, ddca, g3pe 1 LPLIPAL2E140 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C14:0 )" [c] : 2agpe140 + h2o --> g3pe + h + ttdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates 2agpe140, h, g3pe, ttdca 1 LPLIPAL2E160 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C16:0 )" [c] : 2agpe160 + h2o --> g3pe + h + hdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates hdca, h, 2agpe160, g3pe 1 LPLIPAL2E161 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C16:1 )" [c] : 2agpe161 + h2o --> g3pe + h + hdcea B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, 2agpe161, hdcea, g3pe 1 LPLIPAL2E180 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C18:0 )" [c] : 2agpe180 + h2o --> g3pe + h + ocdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, g3pe, 2agpe180, ocdca 1 LPLIPAL2E181 "Lysophospholipase L2 ( 2-acylglycerophosphoethanolamine, n-C18:1 )" [c] : 2agpe181 + h2o --> g3pe + h + ocdcea B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, g3pe, ocdcea, 2agpe181 1 LPLIPAL2G160 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C16:0 )" [c] : 2agpg160 + h2o --> g3pg + h + hdca B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates hdca, h, 2agpg160, g3pg 1 LPLIPAL2G161 "Lysophospholipase L2 ( 2-acylglycerophosphoglycerol, n-C16:1 )" [c] : 2agpg161 + h2o --> g3pg + h + hdcea B3825 LYSOPHOSPHOLIPASE-RXN :gene-match a 2-acyl-sn-glycero-3-phosphocholine + H2O = a carboxylate + L-1-glycero-3-phosphocholine g3pc, 2-Acylglycero-Phosphocholines, Carboxylates h, hdcea, 2agpg161, g3pg 1 LYXt2pp L-Lyxose transport via proton symport ( periplasm ) h[p] + lyx-L[p] --> h[c] + lyx-L[c] B3907 TRANS-RXN-112 :gene-match H+[periplasmic space] + L-rhamnose[periplasmic space] =H+[cytosol] + L-rhamnose[cytosol] rmn lyx-L 1 MALDt2_2pp D-Malate transport via proton symport ( 2 H ) ( periplasm ) ( 2 ) h[p] + mal-D[p] --> ( 2 ) h[c] + mal-D[c] B3528 TRANS-RXN-121 :gene-match Na+[periplasmic space] + succinate[periplasmic space] =Na+[cytosol] + succinate[cytosol] succ, na1 h, mal-D 0 MALTHXabcpp maltohexaose transport via ABC system ( periplasm ) atp[c] + h2o[c] + malthx[p] --> adp[c] + h[c] + malthx[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt malthx, h 4 MALTHXtexi maltohexaose transport via diffusion ( extracellular to periplasm ) irreversible malthx[e] --> malthx[p] B4036 RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt malthx 0 MALTPTabcpp maltopentaose transport via ABC system ( periplasm ) atp[c] + h2o[c] + maltpt[p] --> adp[c] + h[c] + maltpt[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, maltpt 4 MALTptspp maltose transport via PEP:Pyr PTS ( periplasm ) malt[p] + pep[c] --> malt6p[c] + pyr[c] ( B2417 AND B1621 AND B2415 AND B2416 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate sbt6p, sbt-D malt, malt6p 2 MALTPTtexi maltopentaoseMaltotriose transport via diffusion ( extracellular to periplasm ) irreversible maltpt[e] --> maltpt[p] B4036 RXN0-1741 :gene-match maltose[extracellular space] =maltose[periplasmic space] malt maltpt 0 MALTTRabcpp Maltotriose transport via ABC system ( periplasm ) atp[c] + h2o[c] + malttr[p] --> adp[c] + h[c] + malttr[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, malttr 4 MALTTTRabcpp maltotetraose transport via ABC system ( periplasm ) atp[c] + h2o[c] + maltttr[p] --> adp[c] + h[c] + maltttr[c] + pi[c] ( B4034 AND B4033 AND B4032 AND B4035 ) ABC-16-RXN :gene-match ATP + maltose[periplasmic space] + H2O =ADP + phosphate + maltose[cytosol] malt h, maltttr 4 MAN6Pt6_2pp Mannose-6-phosphate transport via phosphate antiport ( periplasm ) man6p[p] + ( 2 ) pi[c] --> man6p[c] + ( 2 ) pi[p] B3666 TRANS-RXN-33 :gene-match H+[periplasmic space] + beta-D-glucose-6-phosphate[periplasmic space] =beta-D-glucose-6-phosphate[cytosol] + H+[cytosol] h, g6p man6p, pi 0 MDH2 Malate dehydrogenase ( ubiquinone 8 as acceptor ) [c] : mal-L + q8 --> oaa + q8h2 B2210 MALATE-DEHYDROGENASE-(ACCEPTOR)-RXN :gene-match an acceptor + malate -> a reduced acceptor + oxaloacetate Donor-H2, Acceptor q8, q8h2 2 MECDPDH2 "2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase" [c] : 2mecdp + nadh --> h2mb4p + h2o + nad B2515 RXN0-882 :gene-match 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + H2O + a protein disulfide = 2-C-methyl-D-erythritol-2,4-cyclodiphosphate + a protein dithiol Protein-Dithiols, Protein-Disulfides nadh, nad 3 MELIBt3ipp melibiose transport in via antiport ( periplasm ) h[p] + melib[c] --> h[c] + melib[p] B1528 TRANS-RXN-40 :gene-match alpha-L-arabinose[cytosol] + H+[periplasmic space] =alpha-L-arabinose[periplasmic space] + H+[cytosol] ARABINOSE melib 1 MLTG3 Maltodextrin glucosidase ( maltopentaose ) [c] : h2o + maltpt --> glc-D + maltttr B0403 MALTET-RXN :gene-match maltotetraose + H2O = maltotriose + beta-D-glucose GLC, malttr maltpt, glc-D 2 MLTG4 Maltodextrin glucosidase ( maltohexaose ) [c] : h2o + malthx --> glc-D + maltpt B0403 MALTODEXGLUCOSID-RXN :gene-match H2O + (1,4-alpha-D-glucosyl)(N) = (1,4-alpha-D-glucosyl)(n-1) + alpha-D-glucose 14glucan, ALPHA-GLUCOSE malthx, maltpt, glc-D 1 MLTG5 Maltodextrin glucosidase ( maltoheptaose ) [c] : h2o + malthp --> glc-D + malthx B0403 MALTODEXGLUCOSID-RXN :gene-match H2O + (1,4-alpha-D-glucosyl)(N) = (1,4-alpha-D-glucosyl)(n-1) + alpha-D-glucose 14glucan, ALPHA-GLUCOSE malthp, malthx, glc-D 1 MLTP1 Maltodextrin phosphorylase ( maltopentaose ) [c] : maltpt + pi <==> g1p + maltttr B3417 MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790 maltpt 3 MLTP2 Maltodextrin phosphorylase ( maltohexaose ) [c] : malthx + pi <==> g1p + maltpt B3417 MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790, maltttr malthx, maltpt 2 MLTP3 Maltodextrin phosphorylase ( maltoheptaose ) [c] : malthp + pi <==> g1p + malthx B3417 MALDEXPHOSPHORYL-RXN :gene-match maltodextrin + phosphate = maltotetraose + alpha-D-glucose 1-phosphate CPD-1790, maltttr malthp, malthx 2 MN2t3pp manganese ( Mn+2 ) transport out via proton antiport ( periplasm ) h[p] + mn2[c] --> h[c] + mn2[p] ( B3915 OR B0752 ) TRANS-RXN-200 :gene-match Zn2+[cytosol] + H+[periplasmic space] =Zn2+[periplasmic space] + H+[cytosol] zn2 mn2 1 MN2tpp manganese transport in via permease ( no H+ ) mn2[p] --> mn2[c] B3040 RXN0-16 :gene-match Mn2+[periplasmic space] =Mn2+[cytoplasm] 1 NACODA N-acetylornithine deacetylase [c] : acg5sa + h2o --> ac + glu5sa B3957 ACETYLORNDEACET-RXN :gene-match N-acetyl-L-ornithine + H2O = L-ornithine + acetate orn, acorn glu5sa, acg5sa 2 NADH18pp NADH dehydrogenase ( demethylmenaquinone-8 & 3 protons ) ( periplasm ) 2dmmq8[c] + ( 4 ) h[c] + nadh[c] --> 2dmmql8[c] + ( 3 ) h[p] + nad[c] ( B2276 AND B2277 AND B2278 AND B2279 AND B2280 AND B2281 AND B2282 AND B2283 AND B2284 AND B2285 AND B2286 AND B2287 AND B2288 ) NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ q8, q8h2 2dmmq8, 2dmmql8, h 2 NADH9 NADH dehydrogenase ( demethylmenaquinone-8 & 0 protons ) [c] : 2dmmq8 + h + nadh --> 2dmmql8 + nad B1109 NADH-DEHYDROG-A-RXN :gene-match ubiquinone-8 + NADH = ubiquinol-8 + NAD+ q8, q8h2 2dmmq8, 2dmmql8, h 2 NADPHQR2 NADPH Quinone Reductase ( Ubiquinone-8 ) [c] : h + nadph + q8 --> nadp + q8h2 B3028 NADPH-DEHYDROGENASE-(QUINONE)-RXN :gene-match an acceptor + NADPH = a reduced acceptor + NADP+ Donor-H2, Acceptor h, q8h2, q8 2 NADPHQR4 NADPH Quinone Reductase ( 2-Demethylmenaquinone-8 ) [c] : 2dmmq8 + h + nadph --> 2dmmql8 + nadp B3028 NADPH-DEHYDROGENASE-(QUINONE)-RXN :gene-match an acceptor + NADPH = a reduced acceptor + NADP+ Donor-H2, Acceptor 2dmmq8, 2dmmql8, h 2 NAMNPP nicotinic acid mononucleotide pyrophosphorylase [c] : atp + h2o + nac + prpp --> adp + nicrnt + pi + ppi B0931 NICOTINATEPRIBOSYLTRANS-RXN :gene-match nicotinate nucleotide + diphosphate = nicotinate + 5-phosphoribosyl 1-pyrophosphate h2o, pi, adp, atp 4 NHFRBO NADH:flavorubredoxin oxidoreductase [c] : h + nadh + ( 2 ) no --> h2o + n2o + nad ( B2710 AND B2711 ) RXN0-2721 :gene-match NADH + oxidized flavorubredoxin + 2 nitric oxide = NAD+ + reduced flavorubredoxin + nitrous oxide + H2O CPLX0-2, CPLX0-1 h 5 NO3R1bpp Nitrate reductase ( Ubiquinol-8 ) no3[p] + q8h2[c] --> h2o[p] + no2[p] + q8[c] ( ( B2203 AND B2206 ) AND B2202 AND B2205 AND B2204 ) RXN0-2081 :gene-match ubiquinol-10 + NO3- = ubiquinone-10 + nitrite + H2O UBIQUINONE-10, UBIQUINOL-10 q8, q8h2 3 NO3R1pp Nitrate reductase ( Ubiquinol-8 ) ( periplasm ) ( 2 ) h[c] + no3[c] + q8h2[c] --> ( 2 ) h[p] + h2o[c] + no2[c] + q8[c] ( ( B1465 AND B1466 AND B1467 AND B1468 ) OR ( B1224 AND B1225 AND B1226 AND B1227 ) ) RXN0-3501 :gene-match menaquinol + NO3- -> menaquinone-8 + nitrite + H2O mqn8, mql8 h, q8h2, q8 3 NO3R2bpp Nitrate reductase ( Menaquinol-8 ) ( periplasm ) mql8[c] + no3[p] --> h2o[p] + mqn8[c] + no2[p] ( ( B2203 AND B2206 ) AND B2202 ) RXN0-3501 :gene-match menaquinol + NO3- -> menaquinone-8 + nitrite + H2O 5 NO3t7pp nitrate transport in via nitrite antiport ( periplasm ) no2[c] + no3[p] --> no2[p] + no3[c] ( B1223 OR B1469 ) TRANS-RXN-26 :gene-match H+[periplasmic space] + nitrite[cytosol] =H+[cytosol] + nitrite[periplasmic space] h no3 1 NTD10pp 5'-nucleotidase ( XMP ) [p] : h2o + xmp --> pi + xtsn ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters xmp, xtsn 2 NTD11pp 5'-nucleotidase ( IMP ) [p] : h2o + imp --> ins + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters imp, ins 2 NTD12 5'-nucleotidase ( dIMP ) [c] : dimp + h2o --> din + pi ( B2291 OR B2744 ) 5'-NUCLEOTID-RXN :gene-match a ribonucleoside monophosphate + H2O = a ribonucleoside + phosphate Ribonucleoside-Monophosphates, Ribonucleosides dimp, din 2 NTD12pp 5'-nucleotidase ( dIMP ) ( periplasm ) [p] : dimp + h2o --> din + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dimp, din 2 NTD1pp 5'-nucleotidase ( dUMP ) [p] : dump + h2o --> duri + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dump, duri 2 NTD2pp 5'-nucleotidase ( UMP ) [p] : h2o + ump --> pi + uri ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters ump, uri 2 NTD3pp 5'-nucleotidase ( dCMP ) [p] : dcmp + h2o --> dcyt + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dcmp, dcyt 2 NTD4pp 5'-nucleotidase ( CMP ) [p] : cmp + h2o --> cytd + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters cytd, cmp 2 NTD5pp 5'-nucleotidase ( dTMP ) [p] : dtmp + h2o --> pi + thymd ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dtmp, thymd 2 NTD6pp 5'-nucleotidase ( dAMP ) [p] : damp + h2o --> dad-2 + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters damp, dad-2 2 NTD7pp 5'-nucleotidase ( AMP ) [p] : amp + h2o --> adn + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters adn, amp 2 NTD8pp 5'-nucleotidase ( dGMP ) [p] : dgmp + h2o --> dgsn + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters dgmp, dgsn 2 NTD9pp 5'-nucleotidase ( GMP ) [p] : gmp + h2o --> gsn + pi ( B0480 OR B4055 ) ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters gmp, gsn 2 NTP11 nucleoside-triphosphatase ( dITP ) [c] : ditp + h2o --> didp + h + pi B4394 RXN0-5073 :gene-match ITP + H2O -> IDP + phosphate itp, idp h, ditp, didp 2 NTP3pp nucleoside-triphosphatase ( GTP ) ( periplasm ) [p] : gtp + h2o --> gdp + h + pi B0980 RXN0-1021 :gene-match GTP + H2O = GDP + phosphate h 4 NTP5 nucleoside-triphosphatase ( CTP ) [c] : ctp + h2o --> cdp + h + pi B4161 RXN0-1021 :gene-match GTP + H2O = GDP + phosphate gtp, gdp ctp, cdp, h 2 NTPP2 Nucleoside triphosphate pyrophosphorylase ( gtp ) [c] : gtp + h2o --> gmp + h + ppi ( B0099 OR B2781 ) RXN0-1041 :gene-match a nucleoside triphosphate + H2O -> a nucleoside monophosphate + diphosphate Nucleoside-Monophosphates, Nucleoside-Triphosphates gtp, h, gmp 2 NTPP8 Nucleoside triphosphate pyrophosphorylase ( utp ) [c] : h2o + utp --> h + ppi + ump B2781 RXN0-1041 :gene-match a nucleoside triphosphate + H2O -> a nucleoside monophosphate + diphosphate Nucleoside-Monophosphates, Nucleoside-Triphosphates h, utp, ump 2 NTPP9 Nucleoside triphosphate pyrophosphorylase ( itp ) [c] : h2o + itp --> h + imp + ppi B2954 RXN0-1602 :gene-match dITP + H2O -> dIMP + diphosphate dimp, ditp h, itp, imp 2 NTPTP2 Nucleoside triphosphate tripolyhydrolase [c] : gtp + h2o --> gsn + pppi B0160 DGTPTRIPHYDRO-RXN :gene-match H2O + dGTP -> PPPi + deoxyguanosine dgtp, dgsn gtp, gsn 2 NTRIR2x nitrite Reductase ( NADH ) [c] : ( 5 ) h + ( 3 ) nadh + no2 --> ( 2 ) h2o + ( 3 ) nad + nh4 ( B3365 AND B3366 ) NITRITREDUCT-RXN :gene-match 3 NAD(P)+ + NH(4)OH + H2O -> 3 NAD(P)H + nitrite NAD(P), NAD(P)H, NH4OH h, nadh, nad, nh4 2 NTRIR3pp "nitrite Reductase ( Ubiquinole-8, periplasm )" ( 2 ) h[p] + no2[p] + ( 3 ) q8h2[c] --> ( 2 ) h2o[p] + nh4[p] + ( 3 ) q8[c] ( B4070 AND B4071 AND B4072 AND B4073 ) 1.7.7.2-RXN :gene-match ammonia + 6 oxidized cytochrome c552 + 2 H2O -> nitrite + 6 reduced cytochrome c552 + 7 H+ Cytochromes-C552-Red, AMMONIA, Cytochromes-C552-Ox nh4, q8h2, q8 3 NTRIR4pp "nitrite Reductase ( Menaquinole-8, periplasm )" ( 2 ) h[p] + ( 3 ) mql8[c] + no2[p] --> ( 2 ) h2o[p] + ( 3 ) mqn8[c] + nh4[p] ( B4070 AND B4071 AND B4072 AND B4073 ) 1.7.7.2-RXN :gene-match ammonia + 6 oxidized cytochrome c552 + 2 H2O -> nitrite + 6 reduced cytochrome c552 + 7 H+ Cytochromes-C552-Red, AMMONIA, Cytochromes-C552-Ox mqn8, nh4, mql8 3 ODECOAI Octadecenoyl-coa cis-trans isomerization [c] : odecoa --> od2coa B3846 ENOYL-COA-DELTA-ISOM-RXN :gene-match a cis-3-enoyl-CoA = a trans-2-enoyl-CoA CIS-DELTA3-ENOYL-COA, td2coa od2coa, odecoa 0 OMMBLHX "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" [c] : 2ommbl + ( 0.5 ) o2 --> 2omhmbl B0662 OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN :gene-match 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone + O2 = 3-demethylubiquinone-8 + H2O h2o 3 OMPHHX 2-octaprenyl-6-methoxyphenol hydroxylase [c] : 2omph + ( 0.5 ) o2 --> 2ombzl B2907 2-OCTAPRENYL-6-METHOXYPHENOL-HYDROX-RXN :gene-match 2-octaprenyl-6-methoxyphenol + O2 = H2O + 2-octaprenyl-6-methoxy-1,4-benzoquinone h2o 3 PA120abcpp "phosphatidate transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pa120[c] --> adp[c] + h[c] + pa120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pa120, h 4 PA140abcpp "phosphatidate transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pa140[c] --> adp[c] + h[c] + pa140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa140 4 PA141abcpp "phosphatidate transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pa141[c] --> adp[c] + h[c] + pa141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa141 4 PA160abcpp "phosphatidate transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pa160[c] --> adp[c] + h[c] + pa160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa160 4 PA161abcpp "phosphatidate transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pa161[c] --> adp[c] + h[c] + pa161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa161 4 PA180abcpp "phosphatidate transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pa180[c] --> adp[c] + h[c] + pa180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa180 4 PA181abcpp "phosphatidate transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pa181[c] --> adp[c] + h[c] + pa181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pa181 4 PAPA120pp "Phosphatidate phosphatase ( periplasmic, n-C12:0 )" [p] : h2o + pa120 --> 12dgr120 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pa120, 12dgr120 2 PAPA140pp "Phosphatidate phosphatase ( periplasmic, n-C14:0 )" [p] : h2o + pa140 --> 12dgr140 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr140, pa140 2 PAPA141pp "Phosphatidate phosphatase ( periplasmic, n-C14:1 )" [p] : h2o + pa141 --> 12dgr141 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr141, pa141 2 PAPA160pp "Phosphatidate phosphatase ( periplasmic, n-C16:0 )" [p] : h2o + pa160 --> 12dgr160 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr160, pa160 2 PAPA161pp "Phosphatidate phosphatase ( periplasmic, n-C16:1 )" [p] : h2o + pa161 --> 12dgr161 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr161, pa161 2 PAPA180pp "Phosphatidate phosphatase ( periplasmic, n-C18:0 )" [p] : h2o + pa180 --> 12dgr180 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr180, pa180 2 PAPA181pp "Phosphatidate phosphatase ( periplasmic, n-C18:1 )" [p] : h2o + pa181 --> 12dgr181 + pi B1278 PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 12dgr181, pa181 2 PAPSR2 phosphoadenylyl-sulfate reductase ( glutaredoxin ) [c] : grxrd + paps --> grxox + ( 2 ) h + pap + so3 ( ( B2762 AND B0849 ) OR ( B2762 AND B1064 ) OR ( B2762 AND B1654 ) OR ( B2762 AND B3610 ) ) PAPSREDGLUT-RXN :gene-match a reduced glutaredoxin 1 + 3'-phosphoadenylyl-sulfate = an oxidized glutaredoxin 1 + H+ + sulfite + adenosine-3',5'-bisphosphate GLUTAREDOXIN-1-OXIDIZED grxox 5 PDX5PS Pyridoxine 5'-phosphate synthase [c] : dxyl5p + nad + phthr --> co2 + h + ( 2 ) h2o + nadh + pdx5p + pi ( B0052 AND B2564 ) PDXJ-RXN :gene-match 1-amino-propan-2-one-3-phosphate + 1-deoxy-D-xylulose 5-phosphate = pyridoxine-5'-phosphate + phosphate + 2 H2O 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE h, nadh, phthr, co2, nad 4 PE120abcpp "phosphatidylethanolamine transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pe120[c] --> adp[c] + h[c] + pe120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe120 4 PE140abcpp "phosphatidylethanolamine transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pe140[c] --> adp[c] + h[c] + pe140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe140 4 PE141abcpp "phosphatidylethanolamine transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pe141[c] --> adp[c] + h[c] + pe141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe141 4 PE160abcpp "phosphatidylethanolamine transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pe160[c] --> adp[c] + h[c] + pe160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pe160, h 4 PE161abcpp "phosphatidylethanolamine transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pe161[c] --> adp[c] + h[c] + pe161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pe161, h 4 PE180abcpp "phosphatidylethanolamine transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pe180[c] --> adp[c] + h[c] + pe180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe180 4 PE181abcpp "phosphatidylethanolamine transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pe181[c] --> adp[c] + h[c] + pe181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pe181 4 PEAMNOpp Phenethylamine oxidase [p] : h2o + o2 + peamn --> h2o2 + nh4 + pacald B1386 AMINEPHEN-RXN :gene-match H2O + O2 + phenylethylamine = H2O2 + ammonia + phenylacetaldehyde AMMONIA nh4 5 PETNT161pp phosphoethanolamine transferase ( c-C16:1 ) [p] : lipa + pe161 --> 12dgr161 + enlipa B3546 RXN0-4581 :gene-match KDO2-lipid IVA + a phosphatidylethenolamine = a 1,2-diacylglycerol + phosphatidylethanolamine-KDO2-lipidA kdo2lipid4, PHOSPHATIDYLETHANOLAMINE, 12dgr181 lipa, pe161, 12dgr161 1 PETNT181pp phosphoethanolamine transferase ( c-C16:1 ) [p] : lipa + pe181 --> 12dgr181 + enlipa B3546 RXN0-4581 :gene-match KDO2-lipid IVA + a phosphatidylethenolamine = a 1,2-diacylglycerol + phosphatidylethanolamine-KDO2-lipidA PHOSPHATIDYLETHANOLAMINE, kdo2lipid4 lipa, pe181 2 PG120abcpp "phosphatidylglycerol transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pg120[c] --> adp[c] + h[c] + pg120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg120 4 PG140abcpp "phosphatidylglycerol transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pg140[c] --> adp[c] + h[c] + pg140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg140 4 PG141abcpp "phosphatidylglycerol transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pg141[c] --> adp[c] + h[c] + pg141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg141 4 PG160abcpp "phosphatidylglycerol transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pg160[c] --> adp[c] + h[c] + pg160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg160 4 PG161abcpp "phosphatidylglycerol transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pg161[c] --> adp[c] + h[c] + pg161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg161 4 PG180abcpp "phosphatidylglycerol transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pg180[c] --> adp[c] + h[c] + pg180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pg180 4 PG181abcpp "phosphatidylglycerol transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pg181[c] --> adp[c] + h[c] + pg181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pg181, h 4 PGMT phosphoglucomutase [c] : g1p <==> g6p ( B0688 OR B2690 ) PHOSPHOGLUCMUT-RXN :gene-match alpha-D-glucose 1-phosphate = alpha-D-glucose-6-phosphate ALPHA-GLC-6-P g6p 1 PGP120abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C12:0, periplasm )" atp[c] + h2o[c] + pgp120[c] --> adp[c] + h[c] + pgp120[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp120 4 PGP140abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C14:0, periplasm )" atp[c] + h2o[c] + pgp140[c] --> adp[c] + h[c] + pgp140[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp140 4 PGP141abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C14:1, periplasm )" atp[c] + h2o[c] + pgp141[c] --> adp[c] + h[c] + pgp141[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp141 4 PGP160abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C16:0, periplasm )" atp[c] + h2o[c] + pgp160[c] --> adp[c] + h[c] + pgp160[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp160 4 PGP161abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C16:1, periplasm )" atp[c] + h2o[c] + pgp161[c] --> adp[c] + h[c] + pgp161[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides h, pgp161 4 PGP180abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C18:0, periplasm )" atp[c] + h2o[c] + pgp180[c] --> adp[c] + h[c] + pgp180[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pgp180, h 4 PGP181abcpp "phosphatidylglycerophosphate transport via ABC system ( n-C18:1, periplasm )" atp[c] + h2o[c] + pgp181[c] --> adp[c] + h[c] + pgp181[p] + pi[c] B0914 3.6.3.39-RXN :gene-match a lipopolysaccharide[cytosol] + H2O + ATP =a lipopolysaccharide[out] + phosphate + ADP Lipopolysaccharides pgp181, h 4 PGPP120pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C14:0 )" [p] : h2o + pgp120 --> pg120 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp120, pg120 2 PGPP140pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C14:0 )" [p] : h2o + pgp140 --> pg140 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp140, pg140 2 PGPP141pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C14:1 )" [p] : h2o + pgp141 --> pg141 + pi ( B0418 OR B1278 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pg141, pgp141 2 PGPP160pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C16:0 )" [p] : h2o + pgp160 --> pg160 + pi ( B0418 OR B1278 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp160, pg160 2 PGPP161pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C16:1 )" [p] : h2o + pgp161 --> pg161 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pg161, pgp161 2 PGPP180pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C18:0 )" [p] : h2o + pgp180 --> pg180 + pi ( B1278 OR B0418 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate pg181, pgp181 pgp180, pg180 2 PGPP181pp "phosphatidylglycerol phosphate phosphatase ( periplasm, n-C18:1 )" [p] : h2o + pgp181 --> pg181 + pi ( B0418 OR B1278 ) PGPPHOSPHA-RXN :gene-match an L-1-phosphatidylglycerol-phosphate + H2O = an L-1-phosphatidyl-glycerol + phosphate 4 PHYTSpp Phytase ( periplasm ) [p] : ( 6 ) h2o + minohp --> inost + ( 6 ) pi B0980 6-PHYT-RXN :gene-match H2O + phytate = phosphate + D-myo-inositol (1,2,3,4,5)-pentakisphosphate MI-PENTAKISPHOSPHATE inost 3 PIuabcpp "phosphate transport via ABC system ( uptake, periplasm )" atp[c] + h2o[c] + pi[p] --> adp[c] + h[c] + ( 2 ) pi[c] ( B3726 AND B3725 AND B3727 AND B3728 ) ABC-27-RXN :gene-match ATP + phosphate[periplasmic space] + H2O =ADP + phosphate[cytosol] + phosphate[cytosol] h 4 PLIPA1E120pp "Phospholipase A1 ( phosphatidylethanolamine, n-C12:0 ) ( periplasm )" [p] : h2o + pe120 --> 2agpe120 + ddca + h B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 2agpe120, ddca, pe120 1 PLIPA1E140pp "Phospholipase A1 ( phosphatidylethanolamine, n-C14:0 ) ( periplasm )" [p] : h2o + pe140 --> 2agpe140 + h + ttdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines 2agpe140, h, pe140, ttdca 1 PLIPA1E160pp "Phospholipase A1 ( phosphatidylethanolamine, n-C16:0 ) ( periplasm )" [p] : h2o + pe160 --> 2agpe160 + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, pe160, 2agpe160, h 1 PLIPA1E161pp "Phospholipase A1 ( phosphatidylethanolamine, n-C16:1 ) ( periplasm )" [p] : h2o + pe161 --> 2agpe161 + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pe161, h, hdcea, 2agpe161 1 PLIPA1E180pp "Phospholipase A1 ( phosphatidylethanolamine, n-C18:0 ) ( periplasm )" [p] : h2o + pe180 --> 2agpe180 + h + ocdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe180, 2agpe180, ocdca 1 PLIPA1E181pp "Phospholipase A1 ( phosphatidylethanolamine, n-C18:1 ) ( periplasm )" [p] : h2o + pe181 --> 2agpe181 + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe181, ocdcea, 2agpe181 1 PLIPA1G160pp "Phospholipase A1 ( phosphatidylglycerol, n-C16:0 ) ( periplasm )" [p] : h2o + pg160 --> 2agpg160 + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, h, pg160, 2agpg160 1 PLIPA1G161pp "Phospholipase A1 ( phosphatidylglycerol, n-C16:1 ) ( periplasm )" [p] : h2o + pg161 --> 2agpg161 + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pg161, hdcea, 2agpg161 1 PLIPA2A120pp "Phospholipase A2 ( phosphatidate, n-C12:0 ) ( periplasm )" [p] : h2o + pa120 --> 1ddecg3p + ddca + h B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pa120, ddca, 1ddecg3p, h 1 PLIPA2A140pp "Phospholipase A2 ( phosphatidate, n-C14:0 ) ( periplasm )" [p] : h2o + pa140 --> 1tdecg3p + h + ttdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pa140, 1tdecg3p, ttdca 1 PLIPA2A160pp "Phospholipase A2 ( phosphatidate, n-C16:0 ) ( periplasm )" [p] : h2o + pa160 --> 1hdecg3p + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, 1hdecg3p, pa160, h 1 PLIPA2A161pp "Phospholipase A2 ( phosphatidate, n-C16:1 ) ( periplasm )" [p] : h2o + pa161 --> 1hdec9eg3p + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, hdcea, 1hdec9eg3p, pa161 1 PLIPA2A180pp "Phospholipase A2 ( phosphatidate, n-C18:0 ) ( periplasm )" [p] : h2o + pa180 --> 1odecg3p + h + ocdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pa180, 1odecg3p, ocdca 1 PLIPA2A181pp "Phospholipase A2 ( phosphatidate, n-C18:1 ) ( periplasm )" [p] : h2o + pa181 --> 1odec11eg3p + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, 1odec11eg3p, ocdcea, pa181 1 PLIPA2E160pp "Phospholipase A2 ( phosphatidylethanolamine, n-C16:0 ) ( periplasm )" [p] : h2o + pe160 --> 1agpe160 + h + hdca B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines hdca, pe160, 1agpe160, h 1 PLIPA2E161pp "Phospholipase A2 ( phosphatidylethanolamine, n-C16:1 ) ( periplasm )" [p] : h2o + pe161 --> 1agpe161 + h + hdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pe161, h, 1agpe161, hdcea 1 PLIPA2E181pp "Phospholipase A2 ( phosphatidylethanolamine, n-C18:1 ) ( periplasm )" [p] : h2o + pe181 --> 1agpe181 + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines h, pe181, 1agpe181, ocdcea 1 PLIPA2G181pp "Phospholipase A2 ( phosphatidylglycerol, n-C18:1 ) ( periplasm )" [p] : h2o + pg181 --> 1agpg181 + h + ocdcea B3821 PHOSPHOLIPASE-A1-RXN :gene-match H2O + a phosphatidylcholine -> a 2-acyl-sn-glycero-3-phosphocholine + a carboxylate PHOSPHATIDYLCHOLINE, Carboxylates, 2-Acylglycero-Phosphocholines pg181, h, 1agpg181, ocdcea 1 PPAt4pp Na+/Propionate symporter ( periplasm ) na1[p] + ppa[p] --> na1[c] + ppa[c] B1015 TRANS-RXN-118 :gene-match Na+[periplasmic space] + L-proline[periplasmic space] =Na+[cytosol] + L-proline[cytosol] pro-L ppa 1 PPK2r polyphosphate kinase [c] : atp + ppi <==> adp + pppi B2501 POLYPHOSPHATE-KINASE-RXN :gene-match ATP + (POLYPHOSPHATE)(N) = ADP + (polyphosphate)(n+1) Long-Chain-Polyphosphate ppi, pppi 2 PPKr polyphosphate kinase [c] : atp + pi <==> adp + ppi B2501 POLYPHOSPHATE-KINASE-RXN :gene-match ATP + (POLYPHOSPHATE)(N) = ADP + (polyphosphate)(n+1) Long-Chain-Polyphosphate ppi, pi 2 PPPGO3 protoporphyrinogen oxidase ( anaerobic ) [c] : ( 3 ) fum + pppg9 --> ppp9 + ( 3 ) succ B3850 PROTOPORGENOXI-RXN :gene-match 1.5 O2 + protoporphyrinogen IX = 3 H2O + protoporphyrin IX h2o, o2 succ, fum 2 PPTHpp Phosphonate hydrogenase ( periplasm ) [p] : h2o + ppt --> h2 + pi B0383 ALKAPHOSPHA-RXN :gene-match a phosphate monoester + H2O = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters h2, ppt 2 PSP_Lpp phospho-L-serine phosphatase ( periplasmic ) [p] : h2o + pser-L --> pi + ser-L B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters ser-L, pser-L 2 PTHRpp phospho-L-threonine phosphatase ( periplasmic ) [p] : h2o + thrp --> pi + thr-L B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters thr-L, thrp 2 PTRCORNt7pp putrescine/ornithine antiporter ( periplasm ) orn[c] + ptrc[p] <==> orn[p] + ptrc[c] B0692 TRANS-RXN-69 :gene-match H+[periplasmic space] + putrescine[periplasmic space] =H+[cytosol] + putrescine[cytosol] h orn 1 QMO2 quinol monooxygenase ( Ubiquinol-8 ) [c] : ( 2 ) o2 + q8h2 --> ( 2 ) h + ( 2 ) o2s + q8 B3029 RXN0-3441 :gene-match menadiol + 2 O2 -> menadione + 2 O2- CPD-3766, MENADIOL h, q8h2, q8 2 QMO3 quinol monooxygenase ( menaquinol 8 ) [c] : mql8 + ( 2 ) o2 --> ( 2 ) h + mqn8 + ( 2 ) o2s B3029 RXN0-3441 :gene-match menadiol + 2 O2 -> menadione + 2 O2- CPD-3766, MENADIOL mqn8, h, mql8 2 R5PPpp ribose 5-phosphate phosphatase [p] : h2o + r5p --> pi + rib-D B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters rib-D, r5p 2 SADT2 Sulfate adenyltransferase [c] : atp + gtp + h2o + so4 --> aps + gdp + pi + ppi ( B2751 AND B2752 ) SULFATE-ADENYLYLTRANS-RXN :gene-match sulfate + ATP = APS + diphosphate gdp, gtp, h2o, pi 4 SELCYSS selenocysteine synthase [c] : selnp + sertrna( sec ) --> h + pi + sectrna B3591 2.9.1.1-RXN :gene-match selenophosphate + L-seryl-tRNAsec = phosphate + H2O + L-selenocysteinyl-tRNAsec sertrna(sec), h2o h, sertrna( sec ) 3 SPODMpp superoxide dismutase [p] : ( 2 ) h + ( 2 ) o2s --> h2o2 + o2 B1646 SUPEROX-DISMUT-RXN :gene-match 2 H+ + 2 O2- = H2O2 + O2 4 SUCptspp sucrose transport via PEP:Pyr ( periplasm ) pep[c] + sucr[p] --> pyr[c] + suc6p[c] ( B2417 AND B2429 AND B2415 AND B2416 ) TRANS-RXN-169 :gene-match phosphoenolpyruvate + D-sorbitol[periplasmic space] =D-sorbitol-6-phosphate[cytosol] + pyruvate sbt6p, sbt-D sucr, suc6p 2 TDECOAI tetradecenoyl-coa cis-trans isomerization [c] : tdecoa --> td2coa B3846 ENOYL-COA-DELTA-ISOM-RXN :gene-match a cis-3-enoyl-CoA = a trans-2-enoyl-CoA CIS-DELTA3-ENOYL-COA tdecoa 1 THRabcpp L-threonine transport via ABC system ( periplasm ) atp[c] + h2o[c] + thr-L[p] --> adp[c] + h[c] + pi[c] + thr-L[c] ( B3454 AND B3455 AND B3457 AND B3460 AND B3456 ) ABC-35-RXN :gene-match ATP + L-leucine[periplasmic space] + H2O =ADP + phosphate + L-leucine[cytosol] leu-L h, thr-L 4 THRt4pp L-threonine via sodium symport ( periplasm ) na1[p] + thr-L[p] --> na1[c] + thr-L[c] B3089 RXN0-4083 :gene-match Na+[periplasmic space] + L-serine[periplasmic space] =Na+[cytosol] + L-serine[cytosol] ser-L thr-L 1 THZPSN thiazole phosphate synthesis [c] : atp + cys-L + dxyl5p + tyr-L --> 4hba + 4mpetz + ala-L + amp + co2 + h + h2o + ppi ( B2530 AND B3992 AND ( B3990 AND B3991 ) AND B0423 AND B4407 ) THIAZOLSYN2-RXN :gene-match L-tyrosine + 1-deoxy-D-xylulose 5-phosphate + This-COSH protein = 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate + 4-hydroxybenzyl alcohol + C1 of tyrosine + ThiS protein C1 of tyrosine, Thi-S, ThiS-CoASH-proteins co2, cys-L, h, ppi, ala-L, h2o, atp, amp 4 TMAOR1 Trimethylamine N-oxide reductase ( menaquinol 8 ) [c] : h + mql8 + tmao --> h2o + mqn8 + tma ( ( B1587 AND B1588 AND B1589 AND B1590 ) OR ( B0894 AND B0895 AND B0896 ) ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 dmso, dms tma, tmao 4 TMAOR1pp Trimethylamine N-oxide reductase ( menaquinol 8 ) ( periplasm ) h[p] + mql8[c] + tmao[p] --> h2o[p] + mqn8[c] + tma[p] ( ( B1872 AND B1873 ) OR ( B0996 AND B0997 ) ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, Cytochromes-C mqn8, mql8 4 TMAOR2 Trimethylamine N-oxide reductase ( demethylmenaquinol 8 ) [c] : 2dmmql8 + h + tmao --> 2dmmq8 + h2o + tma ( B0894 AND B0895 AND B0896 ) DIMESULFREDUCT-RXN :gene-match dimethyl sulfoxide + H+ + menaquinol -> dimethylsulfide + H2O + menaquinone-8 mqn8, dmso, dms, mql8 2dmmq8, tmao, 2dmmql8, tma 2 TMAOR2pp Trimethylamine N-oxide reductase ( demethylmenaquinol 8 ) ( periplasm ) 2dmmql8[c] + h[p] + tmao[p] --> 2dmmq8[c] + h2o[p] + tma[p] ( ( B1872 AND B1873 ) OR ( B0996 AND B0997 ) ) 1.7.2.3-RXN :gene-match trimethylamine + 2 oxidized cytochrome c + H2O -> trimethylamine-N-oxide + 2 reduced cytochrome c + 2 H+ Cytochromes-C-Reduced, Cytochromes-C 2dmmq8, 2dmmql8 4 TRE6PS "alpha,alpha-trehalose-phosphate synthase ( UDP-forming )" [c] : g6p + udpg --> h + tre6p + udp B1896 TREHALOSE6PSYN-RXN :gene-match UDP-D-glucose + alpha-D-glucose-6-phosphate = UDP + trehalose 6-phosphate ALPHA-GLC-6-P h, g6p 3 TREHpp "alpha,alpha-trehalase ( periplasm )" [p] : h2o + tre --> ( 2 ) glc-D B1197 TREHALA-RXN :gene-match trehalose + H2O = 2 beta-D-glucose GLC glc-D 2 TUNGSabcpp tungstate transport via ABC system ( periplasm ) atp[c] + h2o[c] + tungs[p] --> adp[c] + h[c] + pi[c] + tungs[c] ( B0763 AND B0764 AND B0765 AND B0760 ) ABC-19-RXN :gene-match ATP + MoO42-[periplasmic space] + H2O =ADP + phosphate + MoO42-[cytosol] mobd h, tungs 4 TYROXDApp Tyramine:oxygen oxidoreductase( deaminating )( flavin-containing ) ( periplasm ) [p] : h2o + o2 + tym --> 4hoxpacd + h2o2 + nh4 B1386 AMINEOXID-RXN :gene-match an aliphatic amine + H2O + O2 = an aldehyde + ammonia + H2O2 an aldehyde, AMMONIA, Aliphatic-Amines tym, 4hoxpacd, nh4 3 TYRPpp phospho-L-tyrosine phosphatase ( periplasmic ) [p] : h2o + tyrp --> pi + tyr-L B4055 ACID-PHOSPHATASE-RXN :gene-match H2O + a phosphate monoester = an alcohol + phosphate Alcohols, Orthophosphoric-Monoesters tyrp, tyr-L 2 UACGALPpp UDP-N-acetyl-D-galactosamine pyrophosphohydrolase ( periplasm ) [p] : h2o + udpacgal --> acgal1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates h, acgal1p, udpacgal 2 UACGAMPpp UDP-N-acetyl-D-glucosamine pyrophosphohydrolase ( periplasm ) [p] : h2o + uacgam --> acgam1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates acgam1p, uacgam, h 2 UDCPDPpp undecaprenyl-diphosphatase ( periplasm ) [p] : h2o + udcpdp --> h + pi + udcpp ( B3057 OR B0841 OR B1278 ) UNDECAPRENYL-DIPHOSPHATASE-RXN :gene-match undecaprenyl diphosphate + H2O -> undecaprenyl phosphate + phosphate h 4 UDPGALPpp UDPgalactose pyrophosphohydrolase [p] : h2o + udpgal --> gal1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates h, udpgal, gal1p 2 UDPGPpp UDPglucose pyrophosphohydrolase [p] : h2o + udpg --> g1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates udpg, h, g1p 2 UGLCURPpp UDP-D-glucuronate pyrophosphohydrolase ( periplasm ) [p] : h2o + udpglcur --> glcur1p + ( 2 ) h + ump B0480 UDPSUGARHYDRO-RXN :gene-match a UDP-sugar + H2O = UMP + an alpha-D-aldose-1-phosphate UDP-sugar, Alpha-D-aldose-1-phosphates h, glcur1p, udpglcur 2 UM3PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [c] : LalaDgluMdap + atp + uamr --> adp + h + pi + ugmd B4233 RXN0-2361 :gene-match UDP-N-acetylmuramate + L-Ala-D-Glu-meso-A2pm + ATP -> UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + ADP + phosphate L-ALA-D-GLU-MESOA2PM h, LalaDgluMdap 5 UM4PCP "UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase" [c] : h2o + um4p --> ala-D + ugmd B1192 RXN0-2061 :gene-match UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanine + H2O -> L-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate ala-L ala-D 3 UPLA4FNT undecaprenyl phosphate-L-Ara4FN transferase [c] : udcpp + udpLa4fn --> uLa4fn + udp B2254 RXN0-3521 :gene-match UDP-beta-L-Ara4FN + undecaprenyl phosphate -> undecaprenyl phosphate-alpha-L-Ara4FN + UDP CPD0-887 udpLa4fn 3 UREAtpp Urea transport via facilitate diffusion ( periplasm ) urea[p] <==> urea[c] B3927 TRANS-RXN-131 :gene-match glycerol[periplasmic space] =glycerol[cytosol] glyc urea 0 VALt2rpp L-valine reversible transport via proton symport ( periplasm ) h[p] + val-L[p] <==> h[c] + val-L[c] B0401 TRANS-RXN-126A :gene-match Na+[periplasmic space] + L-valine[periplasmic space] =Na+[cytosol] + L-valine[cytosol] na1 h 1 XANt2pp xanthine transport in via proton symport ( periplasm ) h[p] + xan[p] --> h[c] + xan[c] B3654 RXN-5076 :gene-match xanthine[periplasmic space] + H+[periplasmic space] =xanthine[cytosol] + H+[cytosol] 2 ZN2tpp zinc transport in via permease ( no H+ ) zn2[p] --> zn2[c] B3040 RXN0-12 :gene-match Zn2+[periplasmic space] =Zn2+[cytoplasm] 1