Revision 669: /trunk/bug/iAF1261

• ..
• Mapping/
• categories.txt
• category2-comment-and-rxns-of-gene.txt
• category2-ecocyc-comments-of-gene.py
• category2-ecocyc-rxns-of-gene.txt
• category2-genes-of-ucsd-rxn.lisp
• category2-mapped-rxns.txt
• category2-matched-rxns-by-gene-all.txt
• category2-matched-rxns-by-gene-best.txt
• category2-unmapped-rxns-w-gene-comments.py
• category2-unmapped-rxns-w-gene-comments.txt
• category2-unmapped-rxns-w-gene-comments.txt~
• category3-comments-and-rxns-of-gene.txt
• category3-comments-complement.txt
• category3-comments-of-protein-by-blattner.py
• category3-ecocyc-comments-of-gene.py
• category3-ecocyc-comments-of-gene.py~
• category3-ecocyc-rxns-of-gene.txt
• category3-genes-of-ucsd-rxn.lisp
• category3-mapped-rxns-wo-cpd-mappings-w-genes-all-rxn.txt
• category3-mapped-rxns-wo-cpd-mappings-w-genes-best-rxn.txt
• category3-matched-rxns-by-gene-all.txt
• category3-matched-rxns-by-gene-best.txt
• category3-unmaped-rxns_w-gene_comments.txt
• category3-unmapped-rxns-w-gene-comments.txt
• category3-unmapped-rxns-w-gene_comments.txt
• category3-unmapped-rxns-wo-cpd-mappings-no-genes-cytoplasmic.txt
• category3-unmapped-rxns-wo-cpd-mappings-no-genes-extracellular.txt
• category3-unmapped-rxns-wo-cpd-mappings-no-genes-periplasmic.txt
• category3-unmapped-rxns-wo-cpd-mappings-no-genes-secretion.txt
• category3-unmapped-rxns-wo-cpd-mappings-no-genes-transport.txt
• category3-unmapped-rxns-wo-cpd-mappings-no-genes.txt
• category3-unmapped-rxns-wo-cpd-mappings-w-genes.txt
• category3-unmapped-rxns-wo-cpd-mappings-wo-genes.txt
• category3-unmapped-rxns-wo-cpd-mappings.txt
• category3-unmapped-rxns_w-gene_comments.txt
• category4-ecocyc-comments-of-gene.py
• category4-ecocyc-comments-of-gene.py~
• category4-ecocyc-rxns-of-gene.txt
• category4-genes-of-ucsd-rxn.lisp
• category4-genes-wo-ecocyc-rxns.txt
• category4-matched-rxns-by-gene-all.txt
• category4-matched-rxns-by-gene-best.txt
• category4-unmapped-rxns-w-gene-comments.txt
• category4-unmapped-w-gene-all-rxns.txt
• category4-unmapped-w-gene-best-rxn.txt
• category4-unmapped-w-gene-mapped.txt
• category4-unmapped-w-genes-comments.txt
• category4-unmapped-w-genes.txt
• category4-unmapped-wo-genes-cytoplasmic.txt
• category4-unmapped-wo-genes-other.txt
• category4-unmapped-wo-genes-periplasmic.txt
• category4-unmapped-wo-genes-spontaneous.txt
• category4-unmapped-wo-genes-transport.txt
• category4-unmapped-wo-genes.txt
• category4-unmapped-wo-genes.txt~
• category4-unmapped.txt
• category4-w-genes.lisp
• category4-w-genes2.lisp
• comments-of-protein-by-blattner.py
• comments-of-protein-by-blattner2.py
• ecocyc-ucsd-cpd-map.lisp
• ecocyc_rxns_and_comments_of_gene.py
• genes-of-ucsd-rxn.lisp
• iAF1261-ecocyc-comments-of-gene.py
• iAF1261-ecocyc-cpd-mappings.txt
• iAF1261-ecocyc-cpd-mappings.xls
• iAF1261-ecocyc-other-rxns-mapped-by-gene.txt
• iAF1261-ecocyc-rxn-mapped-otherwise.txt
• iAF1261-ecocyc-rxn-mapped-otherwise.txt~
• iAF1261-ecocyc-rxn-mappings.txt
• iAF1261-ecocyc-rxn-mappings.txt~
• iAF1261-ecocyc-rxn-mappings.xls
• iAF1261-ecocyc-rxn-unmapped-otherwise.txt
• iAF1261-ecocyc-rxn-unmapped-otherwise.txt~
• iAF1261-ecocyc-rxns-of-gene.txt
• iAF1261-ecocyc-rxns-unmapped-diffusion..lisp
• iAF1261-ecocyc-rxns-unmapped-diffusion.lisp
• iAF1261-ecocyc-rxns-unmapped-diffusion.txt
• iAF1261-ecocyc-rxns-unmapped-diffusion.txt~
• iAF1261-ecocyc-rxns-unmapped-exchange.txt
• iAF1261-ecocyc-rxns-with-unmapped-cpds.txt
• iAF1261-ecocyc-rxns-with-unmapped-cpds.txt~
• iAF1261-genes-of-ucsd-rxn.lisp
• iAF1261-matched-rxns-by-gene-all.txt
• iAF1261-matched-rxns-by-gene-best.txt
• iAF1261-rxns-wo-genes.txt
• iAF1261-unmapped-rxns-w-gene-comments.txt
• iAF1261_rxns_w_genes.txt
• make-category4.py
• make-ecocyc-ucsd-map.lisp
• map-by-gene.lisp
• mapped-other-rxns.txt
• mapping_stats.xls
• match-unmapped-rxns-by-gene.py
• methodology.txt
• other-rxn-mappings-by-gene.txt
• other-rxn-mappings-by-gene1.txt
• predicate.py
• predicate.pyc
• reaction-matcher.py
• reactions-of-category3-unmapped-rxns-w-genes.py
• read_me.txt
• rxn-match-by-gene-predicate-sorted.txt
• rxn-match-by-gene-predicate.txt
• rxn-match-by-gene-predicate2-sorted.txt
• rxn-match-by-gene-predicate2.txt
• rxn-match-by-gene-predicate3.txt
• rxns-with-unmapped-cpds.lisp
• test_reactionmatcher.py
• ucsd-rxns-of-gene.lisp
• unmapped-otherwise.lisp
• unmatched-genes.lisp