abbreviation biocycId officialName equation subSystem proteinClass geneAssociation analysis 12DGR120tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)" 12dgr120[p] --> 12dgr120[c] "Transport, Inner Membrane" (:DIFFUSION) 12DGR140tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:0)" 12dgr140[p] --> 12dgr140[c] "Transport, Inner Membrane" (:DIFFUSION) 12DGR141tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:1)" 12dgr141[p] --> 12dgr141[c] "Transport, Inner Membrane" (:DIFFUSION) 12DGR160tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:0)" 12dgr160[p] --> 12dgr160[c] "Transport, Inner Membrane" (:DIFFUSION) 12DGR161tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:1)" 12dgr161[p] --> 12dgr161[c] "Transport, Inner Membrane" (:DIFFUSION) 12DGR180tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:0)" 12dgr180[p] --> 12dgr180[c] "Transport, Inner Membrane" (:DIFFUSION) 12DGR181tipp "1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:1)" 12dgr181[p] --> 12dgr181[c] "Transport, Inner Membrane" (:DIFFUSION) 12PPDRtex "(R)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)" 12ppd-R[e] <==> 12ppd-R[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) 12PPDRtpp "(R)-Propane-1,2-diol facilitated transport (periplasm)" 12ppd-R[p] <==> 12ppd-R[c] "Transport, Inner Membrane" (:UNMAPPED-CPDS) 12PPDStex "(S)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)" 12ppd-S[e] <==> 12ppd-S[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 12PPDStpp "(S)-Propane-1,2-diol facilitated transport (periplasm)" 12ppd-S[p] <==> 12ppd-S[c] "Transport, Inner Membrane" (:DIFFUSION) 14GLUCANabcpp "1,4-alpha-D-glucan transport via ABC system (periplasm)" 14glucan[p] + atp[c] + h2o[c] --> 14glucan[c] + adp[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b4034 and b4033 and b4032 and b4035 ) 14GLUCANtexi (RXN0-1683) "1,4-alpha-D-glucan transport via diffusion (extracellular to periplasm) irreversible" 14glucan[e] --> 14glucan[p] "Transport, Outer Membrane" b4036 23CAMPtex 23cAMP transport via diffusion (extracellular to periplasm) 23camp[e] <==> 23camp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 23CCMPtex 23cCMP transport via diffusion (extracellular to periplasm) 23ccmp[e] <==> 23ccmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 23CGMPtex 23cGMP transport via diffusion (extracellular to periplasm) 23cgmp[e] <==> 23cgmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 23CUMPtex 23cUMP transport via diffusion (extracellular to periplasm) 23cump[e] <==> 23cump[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 23DAPPAt2rpp "2,3-diaminopropionate proton-linked transporter" 23dappa[p] + h[p] <==> 23dappa[c] + h[c] Update 23DAPPAtex "2,3-diaminopropionate transport via diffusion" 23dappa[e] <==> 23dappa[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 23PDE2pp "2',3'-cyclic-nucleotide phosphodiesterase (UMP) (periplasm)" [p] : 23cump + h2o --> 3ump + h Update 3.1.4.16 b4213 23PDE4pp "2',3'-cyclic-nucleotide phosphodiesterase (CMP) (periplasm)" [p] : 23ccmp + h2o --> 3cmp + h Update 3.1.4.16 b4213 23PDE7pp "2',3'-cyclic-nucleotide phosphodiesterase (AMP) (periplasm)" [p] : 23camp + h2o --> 3amp + h Update 3.1.4.16 b4213 23PDE9pp "2',3'-cyclic-nucleotide phosphodiesterase (GMP) (periplasm)" [p] : 23cgmp + h2o --> 3gmp + h Update 3.1.4.16 b4213 26DAHtex "meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)" 26dap-M[e] <==> 26dap-M[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 2AGPA120tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C12:0) transporter via facilitated diffusion (periplasm) 2ddecg3p[p] --> 2ddecg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPA140tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C14:0) transporter via facilitated diffusion (periplasm) 2tdecg3p[p] --> 2tdecg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPA141tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm) 2tdec7eg3p[p] --> 2tdec7eg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPA160tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C16:0) transporter via facilitated diffusion (periplasm) 2hdecg3p[p] --> 2hdecg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPA161tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C16:1) transporter via facilitated diffusion (periplasm) 2hdec9eg3p[p] --> 2hdec9eg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPA180tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C18:0) transporter via facilitated diffusion (periplasm) 2odecg3p[p] --> 2odecg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPA181tipp 2-Acyl-sn-glycero-3-phosphatidate (n-C18:1) transporter via facilitated diffusion (periplasm) 2odec11eg3p[p] --> 2odec11eg3p[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE120tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0) transporter via facilitated diffusion (periplasm) 2agpe120[p] --> 2agpe120[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE140tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0) transporter via facilitated diffusion (periplasm) 2agpe140[p] --> 2agpe140[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE141tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1) transporter via facilitated diffusion (periplasm) 2agpe141[p] --> 2agpe141[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE160tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0) transporter via facilitated diffusion (periplasm) 2agpe160[p] --> 2agpe160[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE161tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1) transporter via facilitated diffusion (periplasm) 2agpe161[p] --> 2agpe161[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE180tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0) transporter via facilitated diffusion (periplasm) 2agpe180[p] --> 2agpe180[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPE181tipp 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1) transporter via facilitated diffusion (periplasm) 2agpe181[p] --> 2agpe181[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPEAT120 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0) [c] : 2agpe120 + atp + ddca --> amp + pe120 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPEAT140 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:0) [c] : 2agpe140 + atp + ttdca --> amp + pe140 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPEAT141 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:1) [c] : 2agpe141 + atp + ttdcea --> amp + pe141 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPEAT160 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:0) [c] : 2agpe160 + atp + hdca --> amp + pe160 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPEAT161 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:1) [c] : 2agpe161 + atp + hdcea --> amp + pe161 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPEAT180 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:0) [c] : 2agpe180 + atp + ocdca --> amp + pe180 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPEAT181 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:1) [c] : 2agpe181 + atp + ocdcea --> amp + pe181 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPG120tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) transporter via facilitated diffusion (periplasm) 2agpg120[p] --> 2agpg120[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPG140tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0) transporter via facilitated diffusion (periplasm) 2agpg140[p] --> 2agpg140[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPG141tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1) transporter via facilitated diffusion (periplasm) 2agpg141[p] --> 2agpg141[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPG160tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0) transporter via facilitated diffusion (periplasm) 2agpg160[p] --> 2agpg160[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPG161tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1) transporter via facilitated diffusion (periplasm) 2agpg161[p] --> 2agpg161[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPG180tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0) transporter via facilitated diffusion (periplasm) 2agpg180[p] --> 2agpg180[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPG181tipp 2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1) transporter via facilitated diffusion (periplasm) 2agpg181[p] --> 2agpg181[c] "Transport, Inner Membrane" b2835 (:UNMAPPED-CPDS) 2AGPGAT120 2-acyl-glycerophospho-glycerol acyltransferase (n-C12:0) [c] : 2agpg120 + atp + ddca --> amp + pg120 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPGAT140 2-acyl-glycerophospho-glycerol acyltransferase (n-C14:0) [c] : 2agpg140 + atp + ttdca --> amp + pg140 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPGAT141 2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1) [c] : 2agpg141 + atp + ttdcea --> amp + pg141 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPGAT160 2-acyl-glycerophospho-glycerol acyltransferase (n-C16:0) [c] : 2agpg160 + atp + hdca --> amp + pg160 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPGAT161 2-acyl-glycerophospho-glycerol acyltransferase (n-C16:1) [c] : 2agpg161 + atp + hdcea --> amp + pg161 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPGAT180 2-acyl-glycerophospho-glycerol acyltransferase (n-C18:0) [c] : 2agpg180 + atp + ocdca --> amp + pg180 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2AGPGAT181 2-acyl-glycerophospho-glycerol acyltransferase (n-C18:1) [c] : 2agpg181 + atp + ocdcea --> amp + pg181 + ppi Glycerophospholipid Metabolism 2.3.1.40 b2836 (:UNMAPPED-CPDS) 2DGLCNRx 2-dehydro-D-gluconate reductase (NADH) [c] : 2dhglcn + h + nadh --> glcn + nad Alternate Carbon Metabolism b3553 2DGLCNRy (1.1.1.215-RXN) 2-dehydro-D-gluconate reductase (NADPH) [c] : 2dhglcn + h + nadph --> glcn + nadp Alternate Carbon Metabolism 1.1.1.215 b3553 ((LEFT REMOVE PROTON)) 2DGULRx 2-dehydro-L-gulonate reductase (NADH) [c] : 2dhguln + h + nadh --> idon-L + nad Alternate Carbon Metabolism b3553 2DGULRy (YIAE2-RXN) 2-dehydro-L-gulonate reductase (NADPH) [c] : 2dhguln + h + nadph --> idon-L + nadp Alternate Carbon Metabolism b3553 ((LEFT REMOVE PROTON)) 34dhpactex dihydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm) 34dhpac[e] <==> 34dhpac[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 3AMPtex 3AMP transport via diffusion (extracellular to periplasm) 3amp[e] <==> 3amp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 3CMPtex 3CMP transport via diffusion (extracellular to periplasm) 3cmp[e] <==> 3cmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 3GMPtex 3GMP transport via diffusion (extracellular to periplasm) 3gmp[e] <==> 3gmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 3HAD100 (FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0) [c] : 3hdecACP --> h2o + tdec2eACP Cell Envelope Biosynthesis 4.2.1.60 ( b0954 or b0180 ) 3HAD120 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0) [c] : 3hddecACP --> h2o + tddec2eACP Cell Envelope Biosynthesis 4.2.1.61 ( b0954 or b0180 ) 3HAD121 (RXN0-2144) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1) [c] : 3hcddec5eACP --> h2o + t3c5ddeceACP Cell Envelope Biosynthesis 4.2.1.61 ( b0180 or b0954 ) 3HAD140 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0) [c] : 3hmrsACP --> h2o + tmrs2eACP Cell Envelope Biosynthesis 4.2.1.61 ( b0954 or b0180 ) (:EXPANDED-RXN-MATCH) 3HAD141 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1) [c] : 3hcmrs7eACP --> h2o + t3c7mrseACP Cell Envelope Biosynthesis 4.2.1.61 ( b0954 or b0180 ) 3HAD160 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0) [c] : 3hpalmACP --> h2o + tpalm2eACP Cell Envelope Biosynthesis 4.2.1.61 ( b0954 or b0180 ) 3HAD161 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1) [c] : 3hcpalm9eACP --> h2o + t3c9palmeACP Cell Envelope Biosynthesis 4.2.1.61 ( b0180 or b0954 ) 3HAD180 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0) [c] : 3hoctaACP --> h2o + toctd2eACP Cell Envelope Biosynthesis 4.2.1.61 ( b0954 or b0180 ) 3HAD181 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1) [c] : 3hcvac11eACP --> h2o + t3c11vaceACP Cell Envelope Biosynthesis 4.2.1.61 ( b0180 or b0954 ) 3HAD40 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0) [c] : 3haACP --> but2eACP + h2o Cell Envelope Biosynthesis 4.2.1.58 ( b0954 or b0180 ) 3HAD60 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0) [c] : 3hhexACP --> h2o + thex2eACP Cell Envelope Biosynthesis 4.2.1.58 ( b0954 or b0180 ) 3HAD80 (3-HYDROXYDECANOYL-ACP-DEHYDR-RXN FABAUNSATDEHYDR-RXN) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0) [c] : 3hoctACP --> h2o + toct2eACP Cell Envelope Biosynthesis 4.2.1.58 ( b0954 or b0180 ) 3HCINNMH 3-hydroxycinnamate hydroxylase [c] : 3hcinnm + h + nadh + o2 --> dhcinnm + h2o + nad Alternate Carbon Metabolism b0347 (:UNMAPPED-CPDS) 3HPPPNH (MHPHYDROXY-RXN) 3-(3-hydroxy-phenyl)propionate hydroxylase [c] : 3hpppn + h + nadh + o2 --> dhpppn + h2o + nad Alternate Carbon Metabolism b0347 ((LEFT REMOVE PROTON)) 3KGK (RXN0-704) 3-keto-L-gulonate kinase [c] : 3dhguln + atp --> 3dhgulnp + adp + h Update b3580 ((RIGHT REMOVE PROTON)) 3NTD2pp 3'-nucleotidase (UMP) (periplasm) [p] : 3ump + h2o --> pi + uri Update b4213 3NTD4pp 3'-nucleotidase (CMP) (periplasm) [p] : 3cmp + h2o --> cytd + pi Update b4213 3NTD7pp 3'-nucleotidase (AMP) (periplasm) [p] : 3amp + h2o --> adn + pi Update b4213 3NTD9pp 3'-nucleotidase (GMP) (periplasm) [p] : 3gmp + h2o --> gsn + pi Update b4213 3OAR100 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0) [c] : 3odecACP + h + nadph <==> 3hdecACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAR120 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0) [c] : 3oddecACP + h + nadph <==> 3hddecACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR121 (RXN0-2142) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1) [c] : 3ocddec5eACP + h + nadph --> 3hcddec5eACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR140 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0) [c] : 3omrsACP + h + nadph <==> 3hmrsACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAR141 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1) [c] : 3ocmrs7eACP + h + nadph --> 3hcmrs7eACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR160 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0) [c] : 3opalmACP + h + nadph <==> 3hpalmACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR161 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1) [c] : 3ocpalm9eACP + h + nadph --> 3hcpalm9eACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR180 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0) [c] : 3ooctdACP + h + nadph <==> 3hoctaACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR181 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1) [c] : 3ocvac11eACP + h + nadph --> 3hcvac11eACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR40 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0) [c] : actACP + h + nadph <==> 3haACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAR60 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0) [c] : 3ohexACP + h + nadph <==> 3hhexACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAR80 (3-OXOACYL-ACP-REDUCT-RXN) 3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0) [c] : 3ooctACP + h + nadph <==> 3hoctACP + nadp Cell Envelope Biosynthesis 1.1.1.100 b1093 ((LEFT REMOVE PROTON)) 3OAS100 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C10:0) [c] : h + malACP + ocACP --> 3odecACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b2323 or b1095 ) (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAS120 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:0) [c] : dcaACP + h + malACP --> 3oddecACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b2323 or b1095 ) ((LEFT REMOVE PROTON)) 3OAS121 (RXN0-2141) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1) [c] : cdec3eACP + h + malACP --> 3ocddec5eACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 b2323 ((LEFT REMOVE PROTON)) 3OAS140 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0) [c] : ddcaACP + h + malACP --> 3omrsACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b2323 or b1095 ) (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAS141 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1) [c] : cddec5eACP + h + malACP --> 3ocmrs7eACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 b2323 3OAS160 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:0) [c] : h + malACP + myrsACP --> 3opalmACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b2323 or b1095 ) (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAS161 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1) [c] : h + malACP + tdeACP --> 3ocpalm9eACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 b2323 ((LEFT REMOVE PROTON)) 3OAS180 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:0) [c] : h + malACP + palmACP --> 3ooctdACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b1095 or b2323 ) ((LEFT REMOVE PROTON)) 3OAS181 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:1) [c] : h + hdeACP + malACP --> 3ocvac11eACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 b1095 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAS60 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0) [c] : butACP + h + malACP --> 3ohexACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b1095 or b2323 ) (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 3OAS80 (3-OXOACYL-ACP-SYNTH-RXN) 3-oxoacyl-[acyl-carrier-protein] synthase (n-C8:0) [c] : h + hexACP + malACP --> 3ooctACP + ACP + co2 Cell Envelope Biosynthesis 2.3.1.41 ( b2323 or b1095 ) ((LEFT REMOVE PROTON)) 3PEPTabcpp tripeptide (LalaDgluMdap) transport via ABC system (periplasm) LalaDgluMdap[p] + atp[c] + h2o[c] --> LalaDgluMdap[c] + adp[c] + h[c] + pi[c] Murein Recycling ( b1329 and b1244 and b1245 and b1246 and b1247 ) 3PEPTtex LalaDgluMdap (tripeptide) transport via diffusion (extracellular to periplasm) LalaDgluMdap[e] <==> LalaDgluMdap[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 3UMPtex 3UMP transport via diffusion (extracellular to periplasm) 3ump[e] <==> 3ump[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 42A12BOOXpp "4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)" [p] : dopa + h2o + o2 --> 34dhpac + h2o2 + nh4 Update 1.4.3.6 b1386 4HOXPACDtex 4-hydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm) 4hoxpacd[e] <==> 4hoxpacd[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) 4HTHRS 4-Hydroxy-L-threonine synthase [c] : h2o + phthr --> 4hthr + pi Cofactor and Prosthetic Group Biosynthesis b0004 (:UNMAPPED-CPDS) 4PCP "tetrapeptide L,D-carboxypeptidase" [c] : LalaDgluMdapDala + h2o --> LalaDgluMdap + ala-D Murein Recycling b1192 (:UNMAPPED-CPDS) 4PCPpp "tetrapeptide L,D-carboxypeptidase (periplasm)" [p] : LalaDgluMdapDala + h2o --> LalaDgluMdap + ala-D Murein Recycling (:UNMAPPED-CPDS) 4PEPTabcpp tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm) LalaDgluMdapDala[p] + atp[c] + h2o[c] --> LalaDgluMdapDala[c] + adp[c] + h[c] + pi[c] Murein Recycling ( b1243 and b1244 and b1245 and b1246 and b1247 ) (:UNMAPPED-CPDS) 4PEPTtex LalaDgluMdapDala (pentapeptide) transport via diffusion (extracellular to periplasm) LalaDgluMdapDala[e] <==> LalaDgluMdapDala[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) 5DGLCNR (GLUCONATE-5-DEHYDROGENASE-RXN) 5-dehydro-D-gluconate reductase [c] : 5dglcn + h + nadph <==> glcn + nadp Alternate Carbon Metabolism 1.1.1.69 b4266 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) 5DGLCNt2rpp "5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)" 5dglcn[p] + h[p] <==> 5dglcn[c] + h[c] "Transport, Inner Membrane" b4265 5DGLCNtex 5-Dehydro-D-gluconate transport via diffusion (extracellular to periplasm) 5dglcn[e] <==> 5dglcn[p] "Transport, Outer Membrane Porin" ( b1377 or b0929 or b2215 or b0241 ) (:DIFFUSION) 5DOAN 5'-deoxyadenosine nuclosidase [c] : dad-5 + h2o --> 5drib + ade Update b0159 (:UNMAPPED-CPDS) A5PISO (DARAB5PISOM-RXN) arabinose-5-phosphate isomerase [c] : ru5p-D <==> ara5p Alternate Carbon Metabolism 5.3.1.13 ( b3197 or b2708 ) AACPS1 acyl-[acyl-carrier-protein] synthetase (n-C14:0) [c] : ACP + atp + ttdca --> amp + myrsACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 (:UNMAPPED-CPDS) AACPS2 acyl-[acyl-carrier-protein] synthetase (n-C14:1) [c] : ACP + atp + ttdcea --> amp + ppi + tdeACP Cell Envelope Biosynthesis 6.2.1.20 b2836 (:UNMAPPED-CPDS) AACPS3 acyl-[acyl-carrier-protein] synthetase (n-C16:0) [c] : ACP + atp + hdca --> amp + palmACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACPS4 acyl-[acyl-carrier-protein] synthetase (n-C16:1) [c] : ACP + atp + hdcea --> amp + hdeACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACPS5 acyl-[acyl-carrier-protein] synthetase (n-C18:1) [c] : ACP + atp + ocdcea --> amp + octeACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACPS6 acyl-[acyl-carrier-protein] synthetase (n-C18:0) [c] : ACP + atp + ocdca --> amp + ocdcaACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACPS7 acyl-[acyl-carrier-protein] synthetase (n-C12:0) [c] : ACP + atp + ddca --> amp + ddcaACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACPS8 acyl-[acyl-carrier-protein] synthetase (n-C10:0) [c] : ACP + atp + dca --> amp + dcaACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACPS9 (RXN-5741) acyl-[acyl-carrier-protein] synthetase (n-C8:0) [c] : ACP + atp + octa --> amp + ocACP + ppi Cell Envelope Biosynthesis 6.2.1.20 b2836 AACTOOR (AMACETOXID-RXN) Aminoacetone:oxygen oxidoreductase(deaminating)(flavin-containing) [c] : aact + h2o + o2 --> h2o2 + mthgxl + nh4 Update ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) AADDGT (FUC4NACTRANS-RXN) "dTDP-N-4-acetamido-4,6-dideoxy-D-galactose transferase" [c] : dtdp4aaddg + unagamu --> dtdp + h + unagamuf Cell Envelope Biosynthesis b4481 ((RIGHT REMOVE PROTON)) AALDCDLs Aminoacetaldehyde: CO2 ligase (spontaneous reaction) [c] : aacald + co2 <==> 2amsa + h Unassigned AAMYL alpha-amylase [c] : 14glucan --> malthx Update b1927 AAMYLpp alpha-amylase (periplasm) [p] : 14glucan --> malthx Update b3571 AB6PGH Arbutin 6-phosphate glucohydrolase [c] : arbt6p + h2o --> g6p + hqn Alternate Carbon Metabolism 3.2.1.86 b2901 ABTA (GABATRANSAM-RXN) 4-aminobutyrate transaminase [c] : 4abut + akg --> glu-L + sucsal Arginine and Proline Metabolism 2.6.1.19 ( b2662 or b1302 ) ABUTD (AMINOBUTDEHYDROG-RXN) Aminobutyraldehyde dehydrogenase [c] : 4abutn + h2o + nad --> 4abut + (2) h + nadh Arginine and Proline Metabolism 1.2.1.19 b1444 ((RIGHT REMOVE PROTON)) ABUTt2pp (TRANS-RXN-57) 4-aminobutyrate transport in via proton symport (periplasm) 4abut[p] + h[p] --> 4abut[c] + h[c] "Transport, Inner Membrane" b2663 ABUTtex 4-aminobutyrate transport via diffusion (extracellular to periplasm) 4abut[e] <==> 4abut[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACACCT (ACETOACETYL-COA-TRANSFER-RXN) acetyl-CoA:acetoacetyl-CoA transferase [c] : acac + accoa --> aacoa + ac Alternate Carbon Metabolism ( b2221 and b2222 ) ACACT1r (ACETYL-COA-ACETYLTRANSFER-RXN) acetyl-CoA C-acetyltransferase [c] : (2) accoa <==> aacoa + coa Membrane Lipid Metabolism 2.3.1.9 b2224 ACACt2pp acetoacetate transport via proton symport (periplasm) acac[p] + h[p] <==> acac[c] + h[c] Putative Transporters b2223 ACACtex acetoacetate transport via diffusion (extracellular to periplasm) acac[e] <==> acac[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACALD (ACETALD-DEHYDROG-RXN) acetaldehyde dehydrogenase (acetylating) [c] : acald + coa + nad <==> accoa + h + nadh Pyruvate Metabolism 1.2.1.10 ( b0351 or b1241 ) ((RIGHT REMOVE PROTON)) ACALDtex acetaldehyde transport via diffusion (extracellular to periplasm) acald[e] <==> acald[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACALDtpp acetaldehyde reversible transport (periplasm) acald[p] <==> acald[c] "Transport, Inner Membrane" (:DIFFUSION) ACANTHAT acetyl-CoA:anthranilate acetyltransferase [c] : accoa + anth --> acanth + coa Update 2.3.1.118 b1463 ACBIPGT (COBINPGUANYLYLTRANS-RXN) Adenosyl cobinamide phosphate guanyltransferase [c] : adocbip + gtp + h --> agdpcbi + ppi Cofactor and Prosthetic Group Biosynthesis b1993 ((LEFT REMOVE PROTON)) ACCOAC acetyl-CoA carboxylase [c] : accoa + atp + hco3 --> adp + h + malcoa + pi Membrane Lipid Metabolism 6.4.1.2 ( b0185 and b2316 and b3255 and b3256 ) ACCOAL (PROPANOATECOA-LIGASE-RXN) acetate-CoA ligase (ADP-forming) [c] : atp + coa + ppa --> adp + pi + ppcoa Alternate Carbon Metabolism 6.2.1.13 b0335 (:METACYC) ACGAL1PPpp N-acetyl-D-galactosamine 1-phosphatase (periplasm) [p] : acgal1p + h2o --> acgal + pi Update 3.1.3.10 ACGAL1Ptex N-acetyl-D-galactosamine 1-phosphate transport via diffusion (extracellular to periplasm) acgal1p[e] <==> acgal1p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACGALtex N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm) acgal[e] <==> acgal[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACGAM1PPpp N-acetyl-D-glucosamine 1-phosphatase (periplasm) [p] : acgam1p + h2o --> acgam + pi Update 3.1.3.10 ACGAM1Ptex N-acetyl-D-glucosamine 1-phosphate transport via diffusion (extracellular to periplasm) acgam1p[e] <==> acgam1p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACGAMK (N-ACETYLGLUCOSAMINE-KINASE-RXN) N-acetylglucosamine kinase [c] : acgam + atp --> acgam6p + adp + h Murein Recycling 2.7.1.59 b1119 ((RIGHT REMOVE PROTON)) ACGAMT (GLCNACPTRANS-RXN) UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase [c] : uacgam + udcpp --> ump + unaga Cell Envelope Biosynthesis b3784 ACGAptspp (TRANS-RXN-167) N-Acetyl-D-glucosamine transport via PEP:Pyr PTS (periplasm) acgam[p] + pep[c] --> acgam6p[c] + pyr[c] "Transport, Inner Membrane" ( ( b2417 and b1101 and b2415 and b2416 ) or ( b0679 and b2415 and b2416 ) ) ACGAtex N-Acetyl-D-glucosamine transport via diffusion (extracellular to periplasm) acgam[e] <==> acgam[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACGK (ACETYLGLUTKIN-RXN) acetylglutamate kinase [c] : acglu + atp --> acg5p + adp Arginine and Proline Metabolism 2.7.2.8 b3959 ACGS (N-ACETYLTRANSFER-RXN) N-acetylglutamate synthase [c] : accoa + glu-L --> acglu + coa + h Arginine and Proline Metabolism 2.3.1.1 b2818 ((RIGHT REMOVE PROTON)) ACHBS (ACETOOHBUTSYN-RXN) 2-aceto-2-hydroxybutanoate synthase [c] : 2obut + h + pyr --> 2ahbut + co2 "Valine, Leucine, and Isoleucine Metabolism" ( ( b3670 and b3671 ) or ( b0077 and b0078 ) ) ((LEFT REMOVE PROTON)) ACKr (ACETATEKIN-RXN) acetate kinase [c] : ac + atp <==> actp + adp Pyruvate Metabolism 2.7.2.1 ( b3115 or b2296 or b1849 ) ACLS (ACETOLACTSYN-RXN) acetolactate synthase [c] : h + (2) pyr --> alac-S + co2 "Valine, Leucine, and Isoleucine Metabolism" 4.1.3.18 ( ( b3670 and b3671 ) or ( b0077 and b0078 ) ) ((LEFT REMOVE PROTON)) ACM6PH N-acetylmuramate 6-phosphate hydrolase [c] : acmum6p + h2o --> acgam6p + lac-D Update ACMAMUT (UDPMANACATRANS-RXN) UDP-N-acetyl-D-mannosaminuronic acid transferase [c] : uacmamu + unaga --> h + udp + unagamu Cell Envelope Biosynthesis b3794 ((RIGHT REMOVE PROTON)) ACMANAptspp N-acetyl-D-mannosamine transport via PTS (periplasm) acmana[p] + pep[c] --> acmanap[c] + pyr[c] "Transport, Inner Membrane" ( b1817 and b1818 and b1819 and b2415 and b2416 ) ACMANAtex N-acetyl-D-mannosamine transport via diffusion (extracellular to periplasm) acmana[e] <==> acmana[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) acmum[p] + pep[c] --> acmum6p[c] + pyr[c] Update ( b2417 and b2429 and b2415 and b2416 ) ACMUMtex N-acetylmuramate transport via diffusion (extracellular to periplasm) acmum[e] --> acmum[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACNAMt2pp (TRANS-RXN-25) N-acetylneuraminate proton symport (periplasm) acnam[p] + h[p] --> acnam[c] + h[c] "Transport, Inner Membrane" b3224 ACNAMtex N-acetylneuraminate transport via diffusion (extracellular to periplasm) acnam[e] <==> acnam[p] "Transport, Outer Membrane" ( b4311 or b0929 or b2215 ) (:DIFFUSION) ACNML (ACNEULY-RXN) N-Acetylneuraminate lyase [c] : acnam --> acmana + pyr Alternate Carbon Metabolism 4.1.3.3 b3225 ACOAD1f acyl-CoA dehydrogenase (butanoyl-CoA) [c] : btcoa + fad --> b2coa + fadh2 Membrane Lipid Metabolism 1.3.99.2 b0221 ACOAD2f acyl-CoA dehydrogenase (hexanoyl-CoA) [c] : fad + hxcoa --> fadh2 + hx2coa Membrane Lipid Metabolism 1.3.99.3 b0221 ACOAD3f acyl-CoA dehydrogenase (octanoyl-CoA) [c] : fad + occoa --> fadh2 + oc2coa Membrane Lipid Metabolism 1.3.99.3 b0221 ACOAD4f (ACYLCOADEHYDROG-RXN) acyl-CoA dehydrogenase (decanoyl-CoA) [c] : dcacoa + fad --> dc2coa + fadh2 Membrane Lipid Metabolism 1.3.99.3 b0221 (:EXPANDED-RXN-MATCH) ACOAD5f acyl-CoA dehydrogenase (dodecanoyl-CoA) [c] : ddcacoa + fad --> dd2coa + fadh2 Membrane Lipid Metabolism 1.3.99.3 b0221 ACOAD6f (ACYLCOADEHYDROG-RXN) acyl-CoA dehydrogenase (tetradecanoyl-CoA) [c] : fad + tdcoa --> fadh2 + td2coa Membrane Lipid Metabolism 1.3.99.3 b0221 (:METACYC :EXPANDED-RXN-MATCH) ACOAD7f acyl-CoA dehydrogenase (hexadecanoyl-CoA) [c] : fad + pmtcoa --> fadh2 + hdd2coa Membrane Lipid Metabolism 1.3.99.3 b0221 ACOAD8f acyl-CoA dehydrogenase (octadecanoyl-CoA) [c] : fad + stcoa --> fadh2 + od2coa Membrane Lipid Metabolism 1.3.99.3 b0221 ACOATA (ACP-S-ACETYLTRANSFER-RXN) Acetyl-CoA ACP transacylase [c] : ACP + accoa <==> acACP + coa Membrane Lipid Metabolism 2.3.1.38 b1091 ACODA (ACETYLORNDEACET-RXN) acetylornithine deacetylase [c] : acorn + h2o --> ac + orn Arginine and Proline Metabolism 3.5.1.16 b3957 ACOLIPAtex arabinose modified core oligosaccharide lipid A transport via vector (periplasm to extracellular) acolipa[p] --> acolipa[e] Lipopolysaccharide Biosynthesis / Recycling (:DIFFUSION) ACONIs (RXN0-2442) aconitate isomerase (spontaneous) [c] : acon-T <==> acon-C Spontaneous Reaction 5.3.3.7 ACONMT (RXN0-2441) Trans-aconitate methyltransferase [c] : acon-T + amet --> aconm + ahcys Unassigned b1519 ACONTa (ACONITATEDEHYDR-RXN) "aconitase (half-reaction A, Citrate hydro-lyase)" [c] : cit <==> acon-C + h2o Citric Acid Cycle 4.2.1.3 ( b1276 or b0118 ) ACONTb (ACONITATEHYDR-RXN) "aconitase (half-reaction B, Isocitrate hydro-lyase)" [c] : acon-C + h2o <==> icit Citric Acid Cycle 4.2.1.3 ( b0118 or b1276 ) ACOTA (ACETYLORNTRANSAM-RXN) acetylornithine transaminase [c] : acorn + akg <==> acg5sa + glu-L Arginine and Proline Metabolism 2.6.1.11 ( b3359 or b1748 ) ACPS1 (HOLO-ACP-SYNTH-RXN) acyl-carrier protein synthase [c] : apoACP + coa --> ACP + h + pap Cofactor and Prosthetic Group Biosynthesis 2.7.8.7 ( b2563 or b3475 ) (:EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) ACS (ACETATE--COA-LIGASE-RXN) acetyl-CoA synthetase [c] : ac + atp + coa --> accoa + amp + ppi Pyruvate Metabolism 6.2.1.1 b4069 ACSERtex O-Acetyl-L-serine transport via diffusion (extracellular to periplasm) acser[e] <==> acser[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ACSERtpp (RXN0-1923) O-Acetyl-L-serine export via facilitated transport acser[c] --> acser[p] "Transport, Inner Membrane" ( b2578 or b1533 ) ACt2rpp (RXN0-1981) acetate reversible transport via proton symport (periplasm) ac[p] + h[p] <==> ac[c] + h[c] "Transport, Inner Membrane" ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) ACt4pp Na+/Acetate symport (periplasm) ac[p] + na1[p] --> ac[c] + na1[c] Update b4067 ACtex Acetate transport via diffusion (extracellular to periplasm) ac[e] <==> ac[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ADA (ADENODEAMIN-RXN) Adenosine deaminase [c] : adn + h + h2o --> ins + nh4 Nucleotide Salvage Pathway 3.5.4.4 b1623 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) ADCL (ADCLY-RXN) 4-aminobenzoate synthase [c] : 4adcho --> 4abz + h + pyr Cofactor and Prosthetic Group Biosynthesis b1096 ((RIGHT REMOVE PROTON)) ADCS (PABASYN-RXN) 4-amino-4-deoxychorismate synthase [c] : chor + gln-L --> 4adcho + glu-L Cofactor and Prosthetic Group Biosynthesis ( b3360 and b1812 ) ADD (ADENINE-DEAMINASE-RXN) adenine deaminase [c] : ade + h + h2o --> hxan + nh4 Nucleotide Salvage Pathway 3.5.4.2 b3665 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) ADEt2rpp adenine transport via proton symport (reversible) (periplasm) ade[p] + h[p] <==> ade[c] + h[c] "Transport, Inner Membrane" b3654 ADEtex adenine transport via diffusion (extracellular to periplasm) ade[e] <==> ade[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ADK1 (ADENYL-KIN-RXN) adenylate kinase [c] : amp + atp <==> (2) adp Nucleotide Salvage Pathway 2.7.4.3 b0474 ADK3 adentylate kinase (GTP) [c] : amp + gtp <==> adp + gdp Nucleotide Salvage Pathway b0474 ADK4 adentylate kinase (ITP) [c] : amp + itp <==> adp + idp Nucleotide Salvage Pathway b0474 ADMDCr (SAMDECARB-RXN) Adenosylmethionine decarboxylase [c] : amet + h <==> ametam + co2 Arginine and Proline Metabolism 4.1.1.50 b0120 ((LEFT REMOVE PROTON)) ADNCYC (ADENYLATECYC-RXN) adenylate cyclase [c] : atp --> camp + ppi Nucleotide Salvage Pathway 4.6.1.1 b3806 ADNK1 (ADENOSINE-KINASE-RXN) adenosine kinase [c] : adn + atp --> adp + amp + h Nucleotide Salvage Pathway 2.7.1.20 b0474 (:METACYC (RIGHT REMOVE PROTON)) ADNUC (ADENOSINE-NUCLEOSIDASE-RXN) adenosine hydrolase [c] : adn + h2o --> ade + rib-D Update 3.2.2.8 b0030 ADNt2pp (TRANS-RXN-108A) adenosine transport in via proton symport (periplasm) adn[p] + h[p] --> adn[c] + h[c] "Transport, Inner Membrane" ( b2964 or b2393 ) ADNt2rpp (TRANS-RXN-108A) "adenosine transport in via proton symport, reversible (periplasm)" adn[p] + h[p] <==> adn[c] + h[c] "Transport, Inner Membrane" b2406 ADNtex adenosine transport via diffusion (extracellular to periplasm) adn[e] <==> adn[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) ADOCBIK (COBINAMIDEKIN-RXN) Adenosyl cobinamide kinase [c] : adocbi + atp --> adocbip + adp + h Cofactor and Prosthetic Group Biosynthesis b1993 ((RIGHT REMOVE PROTON)) ADOCBLS (COBALAMINSYN-RXN) Adenosylcobalamin 5'-phosphate synthase [c] : agdpcbi + rdmbzi --> adocbl + gmp + h Cofactor and Prosthetic Group Biosynthesis b1992 ((RIGHT REMOVE PROTON)) ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) adocbl[p] + atp[c] + h2o[c] --> adocbl[c] + adp[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b1711 and b1709 and b0158 ) ADOCBLtonex Adenosylcobalimin transport via ton system (extermal) adocbl[e] + h[p] --> adocbl[p] + h[c] "Transport, Outer Membrane" ( b3966 and ( b1252 and b3005 and b3006 ) ) ADPRDP (RXN0-1441) ADPribose diphosphatase [c] : adprib + h2o --> amp + (2) h + r5p Update 3.6.1.13 b3397 ((RIGHT REMOVE PROTON)) ADPT (ADENPRIBOSYLTRAN-RXN) adenine phosphoribosyltransferase [c] : ade + prpp --> amp + ppi Nucleotide Salvage Pathway 2.4.2.7 b0469 ADSK (ADENYLYLSULFKIN-RXN) adenylyl-sulfate kinase [c] : aps + atp --> adp + h + paps Cysteine Metabolism 2.7.1.25 b2750 ((RIGHT REMOVE PROTON)) ADSL1r (AMPSYN-RXN) adenylsuccinate lyase [c] : dcamp <==> amp + fum Purine and Pyrimidine Biosynthesis 4.3.2.2 b1131 ADSL2r (AICARSYN-RXN) adenylosuccinate lyase [c] : 25aics <==> aicar + fum Purine and Pyrimidine Biosynthesis 4.3.2.2 b1131 ADSS (ADENYLOSUCCINATE-SYNTHASE-RXN) adenylosuccinate synthase [c] : asp-L + gtp + imp --> dcamp + gdp + (2) h + pi Purine and Pyrimidine Biosynthesis 6.3.4.4 b4177 ((RIGHT REMOVE PROTON)) AGDC (NAG6PDEACET-RXN) N-acetylglucosamine-6-phosphate deacetylase [c] : acgam6p + h2o --> ac + gam6p Alternate Carbon Metabolism 3.5.1.25 b0677 AGM3PA N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase [c] : anhgm3p + h2o --> LalaDgluMdap + anhgm Murein Recycling b0110 (:UNMAPPED-CPDS) AGM3PApp N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase (periplasm) [p] : anhgm3p + h2o --> LalaDgluMdap + anhgm Murein Recycling ( b4169 or b2435 or b2817 ) (:UNMAPPED-CPDS) AGM3PH "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide beta -1,4-N-acetylglucosaminidase" [c] : anhgm3p + h2o --> acgam + anhm3p Murein Recycling b1107 (:UNMAPPED-CPDS) AGM3Pt2pp GlcNAc-anhMurNAc tripeptide transport in via proton symport (periplasm) anhgm3p[p] + h[p] --> anhgm3p[c] + h[c] Murein Recycling b0433 (:UNMAPPED-CPDS) AGM4PA N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase [c] : anhgm4p + h2o --> LalaDgluMdapDala + anhgm Murein Recycling b0110 (:UNMAPPED-CPDS) AGM4PApp N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase (periplasm) [p] : anhgm4p + h2o --> LalaDgluMdapDala + anhgm Murein Recycling ( b2817 or b4169 or b2435 ) (:UNMAPPED-CPDS) AGM4PCP "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase" [c] : anhgm4p + h2o --> ala-D + anhgm3p Murein Recycling b1192 (:UNMAPPED-CPDS) AGM4PCPpp "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic)" [p] : anhgm4p + h2o --> ala-D + anhgm3p Murein Recycling (:UNMAPPED-CPDS) AGM4PH "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase" [c] : anhgm4p + h2o --> acgam + anhm4p Murein Recycling b1107 (:UNMAPPED-CPDS) AGM4Pt2pp GlcNAc-anhMurNAc tetrapeptide transport in via proton symport (periplasm) anhgm4p[p] + h[p] --> anhgm4p[c] + h[c] Murein Recycling b0433 (:UNMAPPED-CPDS) AGMH "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase" [c] : anhgm + h2o --> acgam + anhm Murein Recycling b1107 (:UNMAPPED-CPDS) AGMHE (5.1.3.20-RXN) ADP-D-glycero-D-manno-heptose epimerase [c] : adphep-DD --> adphep-LD Lipopolysaccharide Biosynthesis / Recycling 5.1.3.20 b3619 AGMT (AGMATIN-RXN) agmatinase [c] : agm + h2o --> ptrc + urea Arginine and Proline Metabolism 3.5.3.11 b2937 AGMt2pp GlcNAc-anhMurNAc transport in via proton symport (periplasm) anhgm[p] + h[p] --> anhgm[c] + h[c] Murein Recycling b0433 (:UNMAPPED-CPDS) AGMtex agmatine transport via diffusion (extracellular to periplasm) agm[e] <==> agm[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) AGPAT120 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C12:0) [c] : 1ddecg3p + ddcaACP --> ACP + pa120 Glycerophospholipid Metabolism 2.3.1.51 b3018 (:EXPANDED-RXN-MATCH) AGPAT140 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:0) [c] : 1tdecg3p + myrsACP --> ACP + pa140 Glycerophospholipid Metabolism 2.3.1.51 b3018 (:EXPANDED-RXN-MATCH) AGPAT141 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1) [c] : 1tdec7eg3p + tdeACP --> ACP + pa141 Glycerophospholipid Metabolism 2.3.1.51 b3018 AGPAT160 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:0) [c] : 1hdecg3p + palmACP --> ACP + pa160 Glycerophospholipid Metabolism 2.3.1.51 b3018 AGPAT161 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-hexadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:1) [c] : 1hdec9eg3p + hdeACP --> ACP + pa161 Glycerophospholipid Metabolism 2.3.1.51 b3018 (:EXPANDED-RXN-MATCH) AGPAT180 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-octadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:0) [c] : 1odecg3p + ocdcaACP --> ACP + pa180 Glycerophospholipid Metabolism 2.3.1.51 b3018 AGPAT181 (1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN) 1-octadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:1) [c] : 1odec11eg3p + octeACP --> ACP + pa181 Glycerophospholipid Metabolism 2.3.1.51 b3018 AGPR (N-ACETYLGLUTPREDUCT-RXN) N-acetyl-g-glutamyl-phosphate reductase [c] : acg5sa + nadp + pi <==> acg5p + h + nadph Arginine and Proline Metabolism 1.2.1.38 b3958 ((RIGHT REMOVE PROTON)) AGt3 silver transport out via proton antiport ag[c] + h[e] --> ag[e] + h[c] "Transport, Outer Membrane" ( b0572 and b0573 and b0574 and b0575 ) AHC (ADENOSYLHOMOCYSTEINASE-RXN) adenosylhomocysteinase [c] : ahcys + h2o <==> adn + hcys-L Methionine Metabolism 3.3.1.1 (:METACYC) AHCYSNS (ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN) S-adenosylhomocysteine nucleosidase [c] : ahcys + h2o --> ade + rhcys Methionine Metabolism 3.2.2.9 b0159 AICART (AICARTRANSFORM-RXN) phosphoribosylaminoimidazolecarboxamide formyltransferase [c] : 10fthf + aicar <==> fprica + thf Purine and Pyrimidine Biosynthesis 2.1.2.3 b4006 AIRC2 phosphoribosylaminoimidazole carboxylase [c] : air + atp + hco3 --> 5caiz + adp + h + pi Purine and Pyrimidine Biosynthesis b0522 AIRC3 (RXN0-743) phosphoribosylaminoimidazole carboxylase (mutase rxn) [c] : 5aizc <==> 5caiz Purine and Pyrimidine Biosynthesis b0523 AKGDH (2OXOGLUTARATEDEH-RXN) 2-Oxogluterate dehydrogenase [c] : akg + coa + nad --> co2 + nadh + succoa Citric Acid Cycle ( b0116 and b0726 and b0727 ) AKGt2rpp (TRANS-RXN-23) 2-oxoglutarate reversible transport via symport (periplasm) akg[p] + h[p] <==> akg[c] + h[c] "Transport, Inner Membrane" b2587 AKGtex alpha-ketoglutarate transport via diffusion (extracellular to periplasm) akg[e] <==> akg[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ALAALAD (3.4.16.4-RXN) D-alanine-D-alanine dipeptidase [c] : alaala + h2o --> (2) ala-D Murein Recycling 3.4.17.14 b1488 ALAALAabcpp D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm) alaala[p] + atp[c] + h2o[c] --> adp[c] + alaala[c] + h[c] + pi[c] "Transport, Inner Membrane" ( ( b1487 and b1486 and b1485 and b1484 and b1483 ) or ( b3544 and b3543 and b3542 and b3541 and b3540 ) ) ALAALAr (DALADALALIG-RXN) D-alanine-D-alanine ligase (reversible) [c] : (2) ala-D + atp <==> adp + alaala + h + pi Cell Envelope Biosynthesis 6.3.2.4 ( b0381 or b0092 ) ((RIGHT REMOVE PROTON)) ALAALAtex D-alanyl-D-alanine (DalaDala) transport via diffusion (extracellular to periplasm) alaala[e] <==> alaala[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ALAGLUE L-alanyl-gamma-glutamate epimerase [c] : LalaDglu <==> LalaLglu Murein Recycling b1325 (:UNMAPPED-CPDS) ALAR (ALARACECAT-RXN) alanine racemase [c] : ala-L <==> ala-D Alanine and Aspartate Metabolism 5.1.1.1 ( b4053 or b1190 ) ALATA_D2 D-alanine transaminase [c] : ala-D + pydx5p --> pyam5p + pyr Cofactor and Prosthetic Group Biosynthesis ( b0870 or b2551 ) ALATA_L (ALANINE-AMINOTRANSFERASE-RXN) L-alanine transaminase [c] : akg + ala-L <==> glu-L + pyr Alanine and Aspartate Metabolism 2.6.1.2 ALATA_L2 alanine transaminase [c] : ala-L + pydx5p --> pyam5p + pyr Cofactor and Prosthetic Group Biosynthesis ( b2551 or b0870 ) ALATRS (ALANINE--TRNA-LIGASE-RXN) Alanyl-tRNA synthetase [c] : ala-L + atp + trnaala --> alatrna + amp + ppi Update 6.1.1.7 b2697 ALAabcpp L-alanine transport via ABC system (periplasm) ala-L[p] + atp[c] + h2o[c] --> adp[c] + ala-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3454 and b3455 and b3457 and b3460 and b3456 ) ALAt2rpp L-alanine reversible transport via proton symport (periplasm) ala-L[p] + h[p] <==> ala-L[c] + h[c] "Transport, Inner Membrane" ( b0007 or b4208 ) ALAtex L-alanine transport via diffusion (extracellular to periplasm) ala-L[e] <==> ala-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ALCD19 alcohol dehydrogenase (glycerol) [c] : glyald + h + nadh <==> glyc + nad Alternate Carbon Metabolism 1.1.1.1 b0356 ALCD2x (ALCOHOL-DEHYDROG-RXN) alcohol dehydrogenase (ethanol) [c] : etoh + nad <==> acald + h + nadh Update 1.1.1.1 ( b1478 or b1241 or b0356 ) ((RIGHT REMOVE PROTON)) ALDD19x (PHENDEHYD-RXN) "aldehyde dehydrogenase (phenylacetaldehyde, NAD)" [c] : h2o + nad + pacald --> (2) h + nadh + pac Alternate Carbon Metabolism 1.2.1.39 b1385 ((RIGHT REMOVE PROTON)) ALDD2x (RXN66-3) "aldehyde dehydrogenase (acetaldehyde, NAD)" [c] : acald + h2o + nad --> ac + (2) h + nadh Alternate Carbon Metabolism 1.2.1.3 b1300 (:METACYC (RIGHT REMOVE PROTON)) ALDD2y (RXN0-3962) "aldehyde dehydrogenase (acetaldehyde, NADP)" [c] : acald + h2o + nadp --> ac + (2) h + nadph Update 1.2.1.4 b3588 ALDD3y "aldehyde dehydrogenase (propanal, NADP)" [c] : h2o + nadp + ppal --> (2) h + nadph + ppa Update b3588 ALDD4 "aldehyde dehydrogenase (butanal, NAD)" [c] : btal + h2o + nad --> but + (2) h + nadh Update ALLK (ALLOSE-KINASE-RXN) Allose kinase [c] : all-D + atp --> adp + all6p + h Update b4084 ((RIGHT REMOVE PROTON)) ALLPI (RXN0-303) Allose 6-phosphate isomerase [c] : all6p <==> allul6p Update b4090 ALLTAMH allantoate amidohydrolase [c] : alltt + (2) h + (2) h2o --> co2 + (2) nh4 + urdglyc Update 3.5.3.9 b0516 ALLTN (ALLANTOINASE-RXN) allantoinase [c] : alltn + h2o --> alltt + h Nitrogen Metabolism 3.5.2.5 b0512 ((RIGHT REMOVE PROTON)) ALLTNt2rpp allantoin transport in via proton symport (periplasm) alltn[p] + h[p] <==> alltn[c] + h[c] Putative Transporters b0511 ALLTNtex allantoin transport via diffusion (extracellular to periplasm) alltn[e] <==> alltn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ALLULPE (RXN0-304) Allulose 6-phosphate epimerase [c] : allul6p <==> f6p Update b4085 ALLabcpp (ABC-42-RXN) D-allose transport via ABC system (periplasm) all-D[p] + atp[c] + h2o[c] --> adp[c] + all-D[c] + h[c] + pi[c] Update ( b4087 and b4088 and b4086 ) ((RIGHT REMOVE PROTON)) ALLtex (RXN0-1683) Allose transport via diffusion (extracellular to periplasm) all-D[e] <==> all-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) ALPATE160pp "apolipoprotein N-acyltransferase (phosphatidylethanolamine, periplasm)" [p] : alpp + pe160 --> 2agpe160 + lpp Lipoprotein b0657 (:UNMAPPED-CPDS) ALPATG160pp "apolipoprotein N-acyltransferase (phosphatidylglycerol, periplasm)" [p] : alpp + pg160 --> 2agpg160 + lpp Lipoprotein b0657 (:UNMAPPED-CPDS) ALR2 (RXN0-4281) aldose reductase (methylglyoxal) [c] : h + mthgxl + nadph --> acetol + nadp Update ( b3012 or b0207 or b1781 or b3001 ) ((LEFT REMOVE PROTON)) ALR4x aldose reductase (acetol) [c] : acetol + h + nadh --> 12ppd-R + nad Update b3945 (:UNMAPPED-CPDS) ALTRH (ALTRODEHYDRAT-RXN) altronate hydrolase [c] : altrn --> 2ddglcn + h2o Alternate Carbon Metabolism 4.2.1.7 b3091 AM3PA anhydrous-N-Acetylmuramyl-tripeptide amidase [c] : anhm3p + h2o --> LalaDgluMdap + anhm Murein Recycling b0110 (:UNMAPPED-CPDS) AM4PA anhydrous-N-Acetylmuramyl-tetrapeptide amidase [c] : anhm4p + h2o --> LalaDgluMdapDala + anhm Murein Recycling b0110 (:UNMAPPED-CPDS) AM4PCP "anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase" [c] : anhm4p + h2o --> ala-D + anhm3p Murein Recycling b1192 (:UNMAPPED-CPDS) AMALT1 (AMYLOMALT-RXN) Amylomaltase (maltotriose) [c] : malt + malttr --> glc-D + maltttr Alternate Carbon Metabolism 2.4.1.25 b3416 AMALT2 Amylomaltase (maltotetraose) [c] : malt + maltttr --> glc-D + maltpt Alternate Carbon Metabolism 2.4.1.25 b3416 AMALT3 Amylomaltase (maltopentaose) [c] : malt + maltpt --> glc-D + malthx Alternate Carbon Metabolism 2.4.1.25 b3416 AMALT4 Amylomaltase (maltohexaose) [c] : malt + malthx --> glc-D + malthp Alternate Carbon Metabolism 2.4.1.25 b3416 AMANAPEr (NANE-RXN) N-acetylmannosamine 6-phosphate epimerase [c] : acmanap <==> acgam6p Update b3223 AMANK (NANK-RXN) N-acetyl-D-mannosamine kinase [c] : acmana + atp --> acmanap + adp + h Alternate Carbon Source 2.7.1.60 b3222 ((RIGHT REMOVE PROTON)) AMAOTr (DAPASYN-RXN) adenosylmethionine-8-amino-7-oxononanoate transaminase [c] : 8aonn + amet <==> amob + dann Cofactor and Prosthetic Group Biosynthesis 2.6.1.62 b0774 AMMQLT8 S-adenosylmethione:2-demthylmenaquinole methyltransferase (menaquinone 8) [c] : 2dmmql8 + amet --> ahcys + h + mql8 Update b3833 AMPMS2 4-amino-2-methyl-5-phosphomethylpyrimidine synthetase [c] : air + h2o + nad --> 4ampm + (2) for + (3) h + nadh Update b3994 AMPN (AMP-NUCLEOSID-RXN) AMP nucleosidase [c] : amp + h2o --> ade + r5p Nucleotide Salvage Pathway 3.2.2.4 b1982 AMPTASECG alanyl aminopeptidase (cys-gly) [c] : cgly + h2o --> cys-L + gly Update 3.4.11.2 ( b0932 or b4260 or b2523 or b0237 ) (:UNMAPPED-CPDS) AMPTASEPG aminopeptidase (pro-gly) [c] : h2o + progly --> gly + pro-L Update 3.4.11.2 ( b4260 or b0237 or b0932 or b2523 ) (:UNMAPPED-CPDS) AMPtex AMP transport via diffusion (extracellular to periplasm) amp[e] <==> amp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ANHGMtex GlcNAc-anhMurNAc transport via diffusion (extracellular to periplasm) anhgm[e] <==> anhgm[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) ANHMK "1,6-anhydrous-N-Acetylmuramate kinase" [c] : anhm + atp + h2o --> acmum6p + adp + h Murein Recycling b1640 ANPRT (PRTRANS-RXN) anthranilate phosphoribosyltransferase [c] : anth + prpp --> ppi + pran "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 2.4.2.18 b1263 ANS (ANTHRANSYN-RXN) anthranilate synthase [c] : chor + gln-L --> anth + glu-L + h + pyr "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.1.3.27 ( b1263 and b1264 ) ((RIGHT REMOVE PROTON)) AOBUTDs (THREOSPON-RXN) L-2-amino-3-oxobutanoate decarboxylation [c] : 2aobut + h --> aact + co2 Update ((LEFT REMOVE PROTON)) AOXSr (7KAPSYN-RXN) 8-amino-7-oxononanoate synthase [c] : ala-L + h + pmcoa <==> 8aonn + co2 + coa Cofactor and Prosthetic Group Biosynthesis 2.3.1.47 b0776 ((LEFT REMOVE PROTON)) AP4AH (3.6.1.41-RXN) Ap4A hydrolase [c] : ap4a + h2o --> (2) adp + (2) h Nucleotide Salvage Pathway 3.6.1.41 b0049 ((RIGHT REMOVE PROTON)) AP5AH Ap5A hydrolase [c] : ap5a + h2o --> adp + atp + (2) h Nucleotide Salvage Pathway b0049 (:UNMAPPED-CPDS) APRAUR (RIBOFLAVINSYNREDUC-RXN) 5-amino-6-(5-phosphoribosylamino)uracil reductase [c] : 5apru + h + nadph --> 5aprbu + nadp Cofactor and Prosthetic Group Biosynthesis 1.1.1.193 b0414 ARAI (ARABISOM-RXN) L-arabinose isomerase [c] : arab-L <==> rbl-L Alternate Carbon Metabolism 5.3.1.4 b0062 ARBTNR1 aerobactin reductase [c] : (2) arbtn-fe3 + fadh2 --> (2) arbtn + fad + (2) fe2 + (2) h Update (:UNMAPPED-CPDS) ARBTNR2 aerobactin reductase [c] : (2) arbtn-fe3 + fmnh2 --> (2) arbtn + (2) fe2 + fmn + (2) h Update (:UNMAPPED-CPDS) ARBTNR3 aerobactin reductase [c] : (2) arbtn-fe3 + rbflvrd --> (2) arbtn + (2) fe2 + (2) h + ribflv Update (:UNMAPPED-CPDS) ARBTNabcpp aerobactin transport via ABC system (periplasm) arbtn-fe3[p] + atp[c] + h2o[c] --> adp[c] + arbtn-fe3[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0153 and b0151 and b0152 ) (:UNMAPPED-CPDS) ARBTNexs aerobactin Fe-loading reaction (spontaneous) [e] : arbtn + fe3 --> arbtn-fe3 Update (:UNMAPPED-CPDS) ARBTNtex aerobactin secretion (to extracellular) arbtn[p] + h[p] --> arbtn[e] + h[c] "Transport, Outer Membrane" ARBTNtonex aerobactin transport via ton system (extracellular) arbtn-fe3[e] + h[p] --> arbtn-fe3[p] + h[c] "Transport, Outer Membrane" (:UNMAPPED-CPDS) ARBTNtpp aerobactin secretion (to periplasm) arbtn[c] + h[p] --> arbtn[p] + h[c] Update ARBabcpp (ABC-2-RXN) L-arabinose transport via ABC system (periplasm) arab-L[p] + atp[c] + h2o[c] --> adp[c] + arab-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b1901 and b1900 and b4460 ) ((RIGHT REMOVE PROTON)) ARBt2rpp (TRANS-RXN-10) L-arabinose transport via proton symport (periplasm) arab-L[p] + h[p] <==> arab-L[c] + h[c] "Transport, Inner Membrane" b2841 ARBt3ipp (TRANS-RXN-40) L-arabinose transport via proton antiport (periplasm) arab-L[c] + h[p] --> arab-L[p] + h[c] "Transport, Inner Membrane" b1528 ARBtex (RXN0-1683) L-arabinose transport via diffusion (extracellular to periplasm) arab-L[e] <==> arab-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) ARGAGMt7pp (RXN0-2162) Arginine/agmatine antiport (periplasm) agm[c] + arg-L[p] <==> agm[p] + arg-L[c] Update b4115 ARGDC (ARGDECARBOX-RXN) arginine decarboxylase [c] : arg-L + h --> agm + co2 Arginine and Proline Metabolism 4.1.1.19 b4117 ((LEFT REMOVE PROTON)) ARGDCpp arginine decarboxylase [p] : arg-L + h --> agm + co2 Update 4.1.1.19 b2938 ARGORNt7pp arginine/ornithine antiporter (periplasm) arg-L[p] + orn[c] <==> arg-L[c] + orn[p] "Transport, Inner Membrane" b1605 ARGSL (ARGSUCCINLYA-RXN) argininosuccinate lyase [c] : argsuc <==> arg-L + fum Arginine and Proline Metabolism 4.3.2.1 b3960 ARGSS (ARGSUCCINSYN-RXN) argininosuccinate synthase [c] : asp-L + atp + citr-L --> amp + argsuc + h + ppi Arginine and Proline Metabolism 6.3.4.5 b3172 ((RIGHT REMOVE PROTON)) ARGTRS (ARGININE--TRNA-LIGASE-RXN) Arginyl-tRNA synthetase [c] : arg-L + atp + trnaarg --> amp + argtrna + ppi Update 6.1.1.19 b1876 ARGabcpp (ABC-4-RXN) L-arginine transport via ABC system (periplasm) arg-L[p] + atp[c] + h2o[c] --> adp[c] + arg-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ( ( b0863 and b0860 and b0861 and b0864 and b0862 ) or ( b2310 and b2307 and b2306 and b2308 ) ) ((RIGHT REMOVE PROTON)) ARGt3pp L-arginine transport out via proton antiport (cytoplasm to periplasm) arg-L[c] + h[p] --> arg-L[p] + h[c] "Transport, Inner Membrane" b2923 ARGtex L-arginine transport via diffusion (extracellular to periplasm) arg-L[e] <==> arg-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ASAD (ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN) aspartate-semialdehyde dehydrogenase [c] : aspsa + nadp + pi <==> 4pasp + h + nadph Threonine and Lysine Metabolism 1.2.1.11 b3433 ((RIGHT REMOVE PROTON)) ASCBPL L-ascorbate 6-phosphate lactonase [c] : ascb6p + h2o --> 3dhgulnp + h Update b4192 ASCBptspp (RXN0-2461) L-ascorbate transport via PEP:Pyr PTS (periplasm) ascb-L[p] + pep[c] --> ascb6p[c] + pyr[c] Update ( b2415 and b2416 and b4195 and b4194 and b4193 ) ASCBtex L-ascorbate transport via diffusion (extracellular to periplasm) ascb-L[e] <==> ascb-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ASNN (ASPARAGHYD-RXN) L-asparaginase [c] : asn-L + h2o --> asp-L + nh4 Alanine and Aspartate Metabolism 3.5.1.1 ( b0828 or b1767 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) ASNNpp L-asparaginase [p] : asn-L + h2o --> asp-L + nh4 Update 3.5.1.1 b2957 ASNS1 (ASNSYNB-RXN) asparagine synthase (glutamine-hydrolysing) [c] : asp-L + atp + gln-L + h2o --> amp + asn-L + glu-L + h + ppi Alanine and Aspartate Metabolism 6.3.5.4 b0674 ((RIGHT REMOVE PROTON)) ASNS2 (ASNSYNA-RXN) asparagine synthetase [c] : asp-L + atp + nh4 --> amp + asn-L + h + ppi Alanine and Aspartate Metabolism 6.3.1.1 b3744 ((LEFT SUBSTITUTE AMMONIA AMMONIUM) (RIGHT REMOVE PROTON)) ASNTRS (ASPARAGINE--TRNA-LIGASE-RXN) Asparaginyl-tRNA synthetase [c] : asn-L + atp + trnaasn --> amp + asntrna + ppi Update 6.1.1.22 b0930 ASNabcpp L-asparagine transport via ABC system (periplasm) asn-L[p] + atp[c] + h2o[c] --> adp[c] + asn-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ASNt2rpp (TRANS-RXN-262) L-asparagine reversible transport via proton symport (periplasm) asn-L[p] + h[p] <==> asn-L[c] + h[c] Putative Transporters b1453 ASNtex L-asparagine transport via diffusion (extracellular to periplasm) asn-L[e] <==> asn-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ASO3t8pp (3.6.3.16-RXN) arsenite efflux via ATP hydrolysis (periplasm) aso3[c] + atp[c] + h2o[c] --> adp[c] + aso3[p] + h[c] + pi[c] "Transport, Inner Membrane" b3502 (:METACYC (RIGHT REMOVE PROTON)) ASO3tex arsenite transport via diffusion (extracellular to periplasm) aso3[e] <==> aso3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ASP1DC (ASPDECARBOX-RXN) aspartate 1-decarboxylase [c] : asp-L + h --> ala-B + co2 Cofactor and Prosthetic Group Biosynthesis 4.1.1.11 b0131 ((LEFT REMOVE PROTON)) ASPCT (ASPCARBTRANS-RXN) aspartate carbamoyltransferase [c] : asp-L + cbp --> cbasp + h + pi Purine and Pyrimidine Biosynthesis 2.1.3.2 ( b4244 and b4245 ) ((RIGHT REMOVE PROTON)) ASPK (ASPARTATEKIN-RXN) aspartate kinase [c] : asp-L + atp <==> 4pasp + adp Threonine and Lysine Metabolism 2.7.2.4 ( b0002 or b3940 or b4024 ) ASPO3 L-aspartate oxidase [c] : asp-L + q8 --> h + iasp + q8h2 Cofactor and Prosthetic Group Biosynthesis b2574 ASPO4 L-aspartate oxidase [c] : asp-L + mqn8 --> h + iasp + mql8 Cofactor and Prosthetic Group Biosynthesis b2574 ASPO5 L-aspartate oxidase [c] : asp-L + fum --> h + iasp + succ Cofactor and Prosthetic Group Biosynthesis b2574 ASPO6 (L-ASPARTATE-OXID-RXN) L-aspartate oxidase [c] : asp-L + o2 --> h + h2o2 + iasp Cofactor and Prosthetic Group Biosynthesis b2574 ((RIGHT REMOVE PROTON)) ASPT (ASPARTASE-RXN) L-aspartase [c] : asp-L --> fum + nh4 Alanine and Aspartate Metabolism 4.3.1.1 b4139 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) ASPTA (ASPAMINOTRANS-RXN) aspartate transaminase [c] : akg + asp-L <==> glu-L + oaa Alanine and Aspartate Metabolism 2.6.1.1 b0928 ASPTRS (ASPARTATE--TRNA-LIGASE-RXN) Aspartyl-tRNA synthetase [c] : asp-L + atp + trnaasp --> amp + asptrna + ppi Update 6.1.1.12 b1866 ASPabcpp L-aspartate transport via ABC system (periplasm) asp-L[p] + atp[c] + h2o[c] --> adp[c] + asp-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0655 and b0654 and b0653 and b0652 ) ASPt2_2pp (TRANS-RXN-122A) Aspartate transport via proton symport (2 H) (periplasm) asp-L[p] + (2) h[p] --> asp-L[c] + (2) h[c] "Transport, Inner Membrane" b3528 ASPt2_3pp (TRANS-RXN-122A) L-asparate transport via proton symport (3 H) (periplasm) asp-L[p] + (3) h[p] --> asp-L[c] + (3) h[c] "Transport, Inner Membrane" ( b4138 or b4123 ) ASPt2pp (TRANS-RXN-122A) L-aspartate transport in via proton symport (periplasm) asp-L[p] + h[p] --> asp-L[c] + h[c] "Transport, Inner Membrane" b4077 ASPtex L-aspartate transport via diffusion (extracellular to periplasm) asp-L[e] <==> asp-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ASR arsenate reductase [c] : aso4 + (2) gthrd --> aso3 + gthox + h2o Update b3503 AST (ARGININE-N-SUCCINYLTRANSFERASE-RXN) Arginine succinyltransferase [c] : arg-L + succoa --> coa + h + sucarg Arginine and Proline Metabolism 2.3.1.109 b1747 ((RIGHT REMOVE PROTON)) ATHRDHr L-allo-threonine dehydrogenase [c] : athr-L + nadp <==> 2aobut + h + nadph Update b1539 ATPHs (ATP-DEAMINASE-RXN) ATP spontanous amine hydrolysis [c] : atp + h + h2o --> itp + nh4 Update (:METACYC (LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) ATPM (RXN0-1061 3.6.3.1-RXN 3.6.3.15-RXN 3.6.3.46-RXN 3.6.3.49-RXN 3.6.3.50-RXN 3.6.3.51-RXN 3.6.3.52-RXN 3.6.4.1-RXN 3.6.4.2-RXN 3.6.4.3-RXN 3.6.4.4-RXN 3.6.4.5-RXN 3.6.4.6-RXN 3.6.4.7-RXN 3.6.4.8-RXN 3.6.4.9-RXN 3.6.4.11-RXN ADENOSINETRIPHOSPHATASE-RXN) ATP maintenance requirement [c] : atp + h2o --> adp + h + pi Unassigned (:METACYC (RIGHT REMOVE PROTON)) ATPPRT (ATPPHOSPHORIBOSYLTRANS-RXN) ATP phosphoribosyltransferase [c] : atp + prpp --> ppi + prbatp Histidine Metabolism 2.4.2.17 b2019 ATPS4rpp (ATPSYN-RXN) ATP synthase (four protons for one ATP) (periplasm) adp[c] + (4) h[p] + pi[c] <==> atp[c] + (3) h[c] + h2o[c] Oxidative Phosphorylation 3.6.3.14 ( ( ( b3736 and b3737 and b3738 ) and ( b3731 and b3732 and b3733 and b3734 and b3735 ) and b3739 ) or ( ( b3736 and b3737 and b3738 ) and ( b3731 and b3732 and b3733 and b3734 and b3735 ) ) ) BALAt2rpp beta-alanine reversible transport via proton symport (periplasm) ala-B[p] + h[p] <==> ala-B[c] + h[c] Update b4208 BALAtex beta-alanine transport via diffusion (extracellular to periplasm) ala-B[e] <==> ala-B[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) BETALDHx (BADH-RXN) betaine-aldehyde dehydrogenase [c] : betald + h2o + nad --> glyb + (2) h + nadh Unassigned 1.2.1.8 b0312 ((RIGHT REMOVE PROTON)) BETALDHy betaine-aldehyde dehydrogenase [c] : betald + h2o + nadp --> glyb + (2) h + nadph Unassigned 1.2.1.8 b0312 BPNT (|3'(2'),5'-BISPHOSPHATE-NUCLEOTIDASE-RXN|) "3',5'-bisphosphate nucleotidase" [c] : h2o + pap --> amp + pi Cysteine Metabolism 3.1.3.7 (:METACYC) BSORx Biotin sulfoxide reductase [c] : btnso + h + nadh --> btn + h2o + nad Cofactor and Prosthetic Group Biosynthesis b3551 BSORy Biotin sulfoxide reductase [c] : btnso + h + nadph --> btn + h2o + nadp Cofactor and Prosthetic Group Biosynthesis b3551 BTS4 (2.8.1.6-RXN) Biotin synthase [c] : amet + dtbt + s --> btn + dad-5 + h + met-L Cofactor and Prosthetic Group Biosynthesis 2.8.1.6 b0775 ((RIGHT REMOVE PROTON)) BUTCT (R11-RXN) Acetyl-CoA:butyrate-CoA transferase [c] : accoa + but --> ac + btcoa Alternate Carbon Metabolism 2.8.3.8 ( b2221 and b2222 ) (:METACYC) BUTSO3abcpp butanesulfonate transport via ABC system (periplasm) atp[c] + butso3[p] + h2o[c] --> adp[c] + butso3[c] + h[c] + pi[c] Update ( ( b0936 and b0933 and b0934 ) or ( b0365 and b0366 and b0367 ) ) BUTSO3tex butanesulfonate transport via diffusion (extracellular to periplasm) butso3[e] <==> butso3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) BUTt2rpp "Butyrate transport via proton symport, reversible (periplasm)" but[p] + h[p] <==> but[c] + h[c] Putative Transporters b2223 BUTtex Butyrate transport via diffusion (extracellular to periplasm) but[e] <==> but[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CA2tex calcium (Ca+2) transport via diffusion (extracellular to periplasm) ca2[e] <==> ca2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CADVtpp Lysine/Cadaverine antiporter (periplasm) 15dap[c] + h[p] + lys-L[p] --> 15dap[p] + h[c] + lys-L[c] "Transport, Inner Membrane" b4132 CAT (CATAL-RXN) catalase [c] : (2) h2o2 --> (2) h2o + o2 Unassigned 1.11.1.6 ( b1732 or b3942 ) CAt3pp (TRANS-RXN-144) calcium transport out via proton antiport (periplasm) ca2[c] + h[p] --> ca2[p] + h[c] "Transport, Inner Membrane" b1216 CAt6pp (TRANS-RXN-128) calcium / sodium antiporter (1:1) ca2[c] + na1[p] <==> ca2[p] + na1[c] "Transport, Inner Membrane" b3196 CBIAT Cobinamide adenyltransferase [c] : atp + cbi + h <==> adocbi + pppi Cofactor and Prosthetic Group Biosynthesis 2.5.1.17 b1270 CBItonex Cobinamide transport via ton system (extermal) cbi[e] + h[p] --> cbi[p] + h[c] "Transport, Outer Membrane" ( b3966 and ( b1252 and b3005 and b3006 ) ) CBIuabcpp "Cobinamide transport via ABC system (uptake, periplasm)" atp[c] + cbi[p] + h2o[c] --> adp[c] + cbi[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b1711 and b1709 and b0158 ) CBL1abcpp (ABC-5-RXN) Cob(1)alamin transport via ABC system (periplasm) atp[c] + cbl1[p] + h2o[c] --> adp[c] + cbl1[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b1711 and b1709 and b0158 ) ((RIGHT REMOVE PROTON)) CBL1tonex (RXN0-1565) Cob(1)alamin transport via ton system (extermal) cbl1[e] + h[p] --> cbl1[p] + h[c] "Transport, Outer Membrane" ( b3966 and ( b1252 and b3005 and b3006 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) CBLAT cob(I)alamin adenosyltransferase [c] : atp + cbl1 + h <==> adocbl + pppi Cofactor and Prosthetic Group Biosynthesis 2.5.1.17 b1270 CBMKr (CARBAMATE-KINASE-RXN) Carbamate kinase [c] : atp + co2 + nh4 <==> adp + cbp + (2) h Update 2.7.2.2 ( b0521 or b0323 or b2874 ) (:METACYC (LEFT SUBSTITUTE AMMONIA AMMONIUM) (RIGHT REMOVE PROTON)) CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) [c] : (2) atp + gln-L + h2o + hco3 --> (2) adp + cbp + glu-L + (2) h + pi Arginine and Proline Metabolism 6.3.5.5 ( b0032 and b0033 ) CD2abcpp Cadmium (Cd+2) ABC transporter (periplasm) atp[c] + cd2[c] + h2o[c] --> adp[c] + cd2[p] + h[c] + pi[c] "Transport, Inner Membrane" b3469 CD2tex cadmium (Cd+2) transport via diffusion (extracellular to periplasm) cd2[e] <==> cd2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CDAPPA120 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C12:0) [c] : cdpdddecg + h2o --> cmp + (2) h + pa120 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDAPPA140 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C14:0) [c] : cdpdtdecg + h2o --> cmp + (2) h + pa140 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDAPPA141 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C14:1) [c] : cdpdtdec7eg + h2o --> cmp + (2) h + pa141 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDAPPA160 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C16:0) [c] : cdpdhdecg + h2o --> cmp + (2) h + pa160 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDAPPA161 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C16:1) [c] : cdpdhdec9eg + h2o --> cmp + (2) h + pa161 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDAPPA180 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C18:0) [c] : cdpdodecg + h2o --> cmp + (2) h + pa180 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDAPPA181 (CDPDIGLYPYPHOSPHA-RXN) CDP-Diacylglycerol pyrophostatase (n-C18:1) [c] : cdpdodec11eg + h2o --> cmp + (2) h + pa181 Glycerophospholipid Metabolism 3.6.1.26 b3918 ((RIGHT REMOVE PROTON)) CDPMEK (2.7.1.148-RXN) 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [c] : 4c2me + atp --> 2p4c2me + adp + h Cofactor and Prosthetic Group Biosynthesis b1208 ((RIGHT REMOVE PROTON)) CDt3pp cadmium (Cd+2) transport out via proton antiport (periplasm) cd2[c] + h[p] --> cd2[p] + h[c] "Tranpsort, Inner Membrane" b0752 CFAS160E "cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)" [c] : (2) amet + pe161 --> (2) ahcys + cpe160 + (2) h Glycerophospholipid Metabolism 2.1.1.79 b1661 CFAS160G "cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)" [c] : (2) amet + pg161 --> (2) ahcys + cpg160 + (2) h Glycerophospholipid Metabolism 2.1.1.79 b1661 CFAS180E "cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C18:0)" [c] : (2) amet + pe181 --> (2) ahcys + cpe180 + (2) h Glycerophospholipid Metabolism 2.1.1.79 b1661 CFAS180G "cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)" [c] : (2) amet + pg181 --> (2) ahcys + cpg180 + (2) h Glycerophospholipid Metabolism 2.1.1.79 b1661 CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) atp[c] + cgly[p] + h2o[c] --> adp[c] + cgly[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3544 and b3543 and b3542 and b3541 and b3540 ) (:UNMAPPED-CPDS) CGLYtex L-Cysteinylglycine transport via diffusion (extracellular to periplasm) cgly[e] <==> cgly[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) CHLabcpp choline transport via ABC system (periplasm) atp[c] + chol[p] + h2o[c] --> adp[c] + chol[c] + h[c] + pi[c] Putative Transporters ( b2128 and b2129 and b2130 and b2131 ) CHLt2rpp (TRANS-RXN-99) "choline transport via proton symport, reversible (periplasm)" chol[p] + h[p] <==> chol[c] + h[c] "Transport, Inner Membrane" ( b0314 or b1801 ) CHLtex choline transport via diffusion (extracellular to periplasm) chol[e] <==> chol[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CHORM (CHORISMATEMUT-RXN) chorismate mutase [c] : chor --> pphn "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 5.4.99.5 ( b2599 or b2600 ) CHORS (CHORISMATE-SYNTHASE-RXN) chorismate synthase [c] : 3psme --> chor + pi "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.2.3.5 b2329 CHRPL (CHORPYRLY-RXN) Chorismate pyruvate lyase [c] : chor --> 4hbz + pyr Cofactor and Prosthetic Group Biosynthesis b4039 CINNDO Cinnamate dioxygenase [c] : cinnm + h + nadh + o2 --> cenchddd + nad Alternate Carbon Metabolism ( b2538 and b2539 and b2540 and b2542 ) CITL (CITLY-RXN) Citrate lyase [c] : cit --> ac + oaa Citric Acid Cycle 4.1.3.6 ( ( b0615 and b0616 and b0617 ) and b0614 ) CITt7pp (TRANS-RXN-201) Citrate transport via succinate antiport (periplasm) cit[p] + succ[c] --> cit[c] + succ[p] "Transport, Inner Membrane" b0612 CITtex citrate transport via diffusion (extracellular to periplasm) cit[e] <==> cit[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CLIPAtex cold lipid A transport via vector (periplasm to extracellular) lipa_cold[p] --> lipa_cold[e] Lipopolysaccharide Biosynthesis / Recycling (:DIFFUSION) CLPNH120pp "cardiolipin hydrolase (periplasm, n-C12:0)" [p] : clpn120 + h2o --> h + pa120 + pg120 Glycerophospholipid Metabolism CLPNH140pp "cardiolipin hydrolase (periplasm, n-C14:0)" [p] : clpn140 + h2o --> h + pa140 + pg140 Glycerophospholipid Metabolism CLPNH141pp "cardiolipin hydrolase (periplasm, n-C14:1)" [p] : clpn141 + h2o --> h + pa141 + pg141 Glycerophospholipid Metabolism CLPNH160pp "cardiolipin hydrolase (periplasm, n-C16:0)" [p] : clpn160 + h2o --> h + pa160 + pg160 Glycerophospholipid Metabolism CLPNH161pp "cardiolipin hydrolase (periplasm, n-C16:1)" [p] : clpn161 + h2o --> h + pa161 + pg161 Glycerophospholipid Metabolism CLPNH180pp "cardiolipin hydrolase (periplasm, n-C18:0)" [p] : clpn180 + h2o --> h + pa180 + pg180 Glycerophospholipid Metabolism CLPNH181pp "cardiolipin hydrolase (periplasm, n-C18:1)" [p] : clpn181 + h2o --> h + pa181 + pg181 Glycerophospholipid Metabolism CLPNS120pp "cardiolipin synthase (periplasmic, n-C12:0)" [p] : (2) pg120 <==> clpn120 + glyc Glycerophospholipid Metabolism ( b1249 or b0789 ) CLPNS140pp "cardiolipin synthase (periplasmic, n-C14:0)" [p] : (2) pg140 <==> clpn140 + glyc Glycerophospholipid Metabolism ( b1249 or b0789 ) CLPNS141pp "cardiolipin synthase (periplasmic, n-C14:1)" [p] : (2) pg141 <==> clpn141 + glyc Glycerophospholipid Metabolism ( b0789 or b1249 ) CLPNS160pp "cardiolipin synthase (periplasmic, n-C16:0)" [p] : (2) pg160 <==> clpn160 + glyc Glycerophospholipid Metabolism ( b1249 or b0789 ) CLPNS161pp "cardiolipin synthase (periplasmic, n-C16:1)" [p] : (2) pg161 <==> clpn161 + glyc Glycerophospholipid Metabolism ( b1249 or b0789 ) CLPNS180pp "cardiolipin synthase (periplasmic, n-C18:0)" [p] : (2) pg180 <==> clpn180 + glyc Glycerophospholipid Metabolism ( b1249 or b0789 ) CLPNS181pp "cardiolipin synthase (periplasmic, n-C18:1)" [p] : (2) pg181 <==> clpn181 + glyc Glycerophospholipid Metabolism ( b1249 or b0789 ) CLt3rpp (RXN0-2501) chloride transport out via proton antiport (periplasm) cl[p] + h[c] <==> cl[c] + h[p] "Transport, Inner Membrane" ( b0155 or b1592 ) CLtex chloride (Cl-1) transport via diffusion (extracellular to periplasm) cl[e] <==> cl[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CMPN CMP nucleosidase [c] : cmp + h2o --> csn + r5p Nucleotide Salvage Pathway 3.2.2.10 CMPtex CMP transport via diffusion (extracellular to periplasm) cmp[e] <==> cmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CO2tex CO2 transport via diffusion (extracellular to periplasm) co2[e] <==> co2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CO2tpp CO2 transporter via diffusion (periplasm) co2[p] <==> co2[c] "Transport, Inner Membrane" (:DIFFUSION) COBALT2abcpp Cobalt (Co+2) ABC transporter (periplasm) atp[c] + cobalt2[c] + h2o[c] --> adp[c] + cobalt2[p] + h[c] + pi[c] "Transport, Inner Membrane" b3469 COBALT2tex cobalt (Co+2) transport via diffusion (extracellular to periplasm) cobalt2[e] <==> cobalt2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) COBALT2tpp (TRANS-RXN-141A) cobalt transport in/out via permease (no H+) cobalt2[p] <==> cobalt2[c] "Transport, Inner Membrane" ( b3816 or b3040 ) COLIPAabcpp core oligosaccharide lipid A transport via ABC system (periplasm) atp[c] + colipa[c] + h2o[c] --> adp[c] + colipa[p] + h[c] + pi[c] Lipopolysaccharide Biosynthesis / Recycling b0914 (:UNMAPPED-CPDS) COLIPAtex core oligosaccharide lipid A transport via vector (periplasm to extracellular) colipa[p] --> colipa[e] Lipopolysaccharide Biosynthesis / Recycling (:UNMAPPED-CPDS) CPGNR1 coprogen(Fe(III)) reductase [c] : (2) cpgn + fadh2 --> (2) cpgn-un + fad + (2) fe2 + (2) h Update (:UNMAPPED-CPDS) CPGNR2 coprogen(Fe(III)) reductase [c] : (2) cpgn + fmnh2 --> (2) cpgn-un + (2) fe2 + fmn + (2) h Update (:UNMAPPED-CPDS) CPGNR3 coprogen(Fe(III)) reductase [c] : (2) cpgn + rbflvrd --> (2) cpgn-un + (2) fe2 + (2) h + ribflv Update (:UNMAPPED-CPDS) CPGNUtex coprogen unloaded secretion (extracellular) cpgn-un[p] + h[p] --> cpgn-un[e] + h[c] Update (:UNMAPPED-CPDS) CPGNUtpp coprogen unloaded secretion cpgn-un[c] + h[p] --> cpgn-un[p] + h[c] Update (:UNMAPPED-CPDS) CPGNabcpp coprogen transport via ABC system (periplasm) atp[c] + cpgn[p] + h2o[c] --> adp[c] + cpgn[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0153 and b0151 and b0152 ) CPGNexs coprogen Fe-loading reaction (spontaneaous) [e] : cpgn-un + fe3 --> cpgn Update (:UNMAPPED-CPDS) CPGNtonex (RXN0-1702) Coprogen transport via ton system (extracellular) cpgn[e] + h[p] --> cpgn[p] + h[c] "Transport, Outer Membrane" ( b1102 and ( b1252 and b3005 and b3006 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) CPPPGO (RXN0-1461) coproporphyrinogen oxidase (O2 required) [c] : cpppg3 + (2) h + o2 --> (2) co2 + (2) h2o + pppg9 Cofactor and Prosthetic Group Biosynthesis 1.3.3.3 b2436 CPPPGO2 (HEMN-RXN) Oxygen Independent coproporphyrinogen-III oxidase [c] : (2) amet + cpppg3 --> (2) co2 + (2) dad-5 + (2) met-L + pppg9 Update b3867 CRNBTCT (RXN0-3601) gamma-butyrobetainyl-CoA: carnitine CoA transferase [c] : bbtcoa + crn <==> crncoa + gbbtn Oxidative Phosphorylation b0038 CRNCAL (LCARNCOALIG-RXN) Carnitine-CoA Ligase [c] : coa + crn + h --> crncoa + h2o Update b0037 ((LEFT REMOVE PROTON)) CRNCAR (CARNCOARACE-RXN) carnitine-CoA racemase [c] : crncoa <==> crnDcoa Update b0036 CRNCBCT crotonobetainyl-CoA: carnitine CoA transferase [c] : crn + ctbtcoa <==> crncoa + ctbt Oxidative Phosphorylation b0038 CRNCDH (RXN0-3561) Carnityl-CoA dehydratse [c] : crncoa <==> ctbtcoa + h2o Oxidative Phosphorylation b0036 CRNDCAL (DCARNCOALIG-RXN) D-Carnitine-CoA Ligase [c] : coa + crn-D + h --> crnDcoa + h2o Update b0037 ((LEFT REMOVE PROTON)) CRNDabcpp D-carnitine transport via ABC system (periplasm) atp[c] + crn-D[p] + h2o[c] --> adp[c] + crn-D[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b2677 and b2678 and b2679 ) CRNDt2rpp D-carnitine outward transport (H+ antiport) crn-D[p] + h[p] <==> crn-D[c] + h[c] "Transport, Inner Membrane" b4111 CRNabcpp L-carnitine transport via ABC system (periplasm) atp[c] + crn[p] + h2o[c] --> adp[c] + crn[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b2677 and b2678 and b2679 ) CRNt2rpp L-carnitine outward transport (H+ antiport) crn[p] + h[p] <==> crn[c] + h[c] "Transport, Inner Membrane" b4111 CRNt7pp (TRANS-RXN-100) Carnitine/butyrobetaine antiporter (periplasm) crn[p] + gbbtn[c] --> crn[c] + gbbtn[p] "Transport, Inner Membrane" b0040 CRNt8pp L-carnitine/D-carnitine antiporter (periplasm) crn[p] + crn-D[c] --> crn[c] + crn-D[p] "Transport, Inner Membrane" b0040 CRNtex L-carnitine transport via diffusion (extracellular to periplasm) crn[e] <==> crn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CS (CITSYN-RXN) citrate synthase [c] : accoa + h2o + oaa --> cit + coa + h Citric Acid Cycle b0720 ((RIGHT REMOVE PROTON)) CSND (CYTDEAM-RXN) Cytosine deaminase [c] : csn + h + h2o --> nh4 + ura Nucleotide Salvage Pathway 3.5.4.1 b0337 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) CSNt2pp (TRANS-RXN-116) cytosine transport in via proton symport (periplasm) csn[p] + h[p] --> csn[c] + h[c] "Transport, Inner Membrane" b0336 CSNtex cytosine transport via diffusion (extracellular to periplasm) csn[e] <==> csn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CTBTCAL (CROTCOALIG-RXN) Crotonobetaine-CoA Ligase [c] : coa + ctbt + h --> ctbtcoa + h2o Update b0037 ((LEFT REMOVE PROTON)) CTBTabcpp crotonobetaine transport via ABC system (periplasm) atp[c] + ctbt[p] + h2o[c] --> adp[c] + ctbt[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b2677 and b2678 and b2679 ) CTBTt2rpp cronobetaine outward transport (H+ antiport) ctbt[p] + h[p] <==> ctbt[c] + h[c] "Transport, Inner Membrane" b4111 CTPS2 CTP synthase (glutamine) [c] : atp + gln-L + h2o + utp --> adp + ctp + glu-L + (2) h + pi Purine and Pyrimidine Biosynthesis 6.3.4.2 b2780 CU1Opp Cuprous Oxidase (Cu+1) [p] : (4) cu + (4) h + o2 --> (4) cu2 + (2) h2o Update b0123 CU1abcpp Copper (Cu +1) ABC transporter (periplasm) atp[c] + cu[c] + h2o[c] --> adp[c] + cu[p] + h[c] + pi[c] "Transport, Inner Membrane" b0484 CU2abcpp Copper (Cu+2) ABC transporter (periplasm) atp[c] + cu2[c] + h2o[c] --> adp[c] + cu2[p] + h[c] + pi[c] "Transport, Inner Membrane" b3469 CU2tex copper (Cu+2) transport via diffusion (extracellular to periplasm) cu2[e] <==> cu2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CU2tpp copper transport in/out via permease (no H+) cu2[p] <==> cu2[c] "Transport, Inner Membrane" ( b3816 or b3040 ) (:DIFFUSION) CUt3 copper transport out via proton antiport cu[c] + h[e] --> cu[e] + h[c] "Transport, Outer Membrane" ( b0572 and b0573 and b0574 and b0575 ) CUtex copper (Cu+1) transport via diffusion (extracellular to periplasm) cu[e] <==> cu[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CYANST (THIOSULFATE-SULFURTRANSFERASE-RXN) Cyanide sulfurtransferase [c] : cyan + tsul --> h + so3 + tcynt Unassigned 2.8.1.1 b3425 ((RIGHT REMOVE PROTON)) CYANSTpp Cyanide sulfurtransferase (periplasmic) [p] : cyan + tsul --> h + so3 + tcynt Update 2.8.1.1 b1308 CYANtex Cyanide transport via diffusion (extracellular to periplasm) cyan[e] <==> cyan[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CYNTAH Cyanate aminohydrolase [c] : cynt + (3) h + hco3 --> (2) co2 + nh4 Nitrogen Metabolism b0340 CYNTt2pp (TRANS-RXN-14) Cyanate transport via proton symport (periplasm) cynt[p] + h[p] --> cynt[c] + h[c] Putative Transporters b0341 CYNTtex Cyanate transport via diffusion (extracellular to periplasm) cynt[e] <==> cynt[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CYSDDS (DCYSDESULF-RXN) D-cysteine desulfhydrase [c] : cys-D + h2o --> h2s + nh4 + pyr Update 4.4.1.15 b1919 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) CYSDS (LCYSDESULF-RXN) Cysteine Desulfhydrase [c] : cys-L + h2o --> h2s + nh4 + pyr Cysteine Metabolism 4.1.99.1 ( b3008 or b3708 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) CYSDabcpp D-cysteine uptake via ABC system (periplasm) atp[c] + cys-D[p] + h2o[c] --> adp[c] + cys-D[c] + h[c] + pi[c] "Transport, Inner Membrane" CYSDtex D-cysteine transport via diffusion (extracellular to periplasm) cys-D[e] <==> cys-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CYSS (ACSERLY-RXN) cysteine synthase [c] : acser + h2s --> ac + cys-L + h Cysteine Metabolism ( b2421 or b2414 ) ((RIGHT REMOVE PROTON)) CYSSADS (RXN0-279) L-cysteine sulfinic acid desulfurase [c] : 3sala + (2) h --> ala-L + so2 Update 4.1.1.12 b2810 ((LEFT REMOVE PROTON)) CYSTL (CYSTATHIONINE-BETA-LYASE-RXN) cystathionine b-lyase [c] : cyst-L + h2o --> hcys-L + nh4 + pyr Methionine Metabolism 4.4.1.8 ( b3008 or b1622 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) CYSTRS (CYSTEINE--TRNA-LIGASE-RXN) Cysteinyl-tRNA synthetase [c] : atp + cys-L + trnacys --> amp + cystrna + ppi Update 6.1.1.16 b0526 CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) atp[c] + cys-L[c] + h2o[c] --> adp[c] + cys-L[p] + h[c] + pi[c] Update ( b0886 and b0887 ) CYSabcpp L-cysteine uptake via ABC system (periplasm) atp[c] + cys-L[p] + h2o[c] --> adp[c] + cys-L[c] + h[c] + pi[c] "Transport, Inner Membrane" CYStex L-cysteine transport via diffusion (extracellular to periplasm) cys-L[e] <==> cys-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CYStpp (RXN0-1924) L-cysteine export via facilitated transport cys-L[c] --> cys-L[p] "Transport, Inner Membrane" ( b2578 or b1533 ) CYTBD2pp cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm) (2) h[c] + mql8[c] + (0.5) o2[c] --> (2) h[p] + h2o[c] + mqn8[c] Update ( b0978 and b0979 ) CYTBDpp (CYT-UBIQUINOL-OXID-RXN) cytochrome oxidase bd (ubiquinol-8: 2 protons) (periplasm) (2) h[c] + (0.5) o2[c] + q8h2[c] --> (2) h[p] + h2o[c] + q8[c] Oxidative Phosphorylation ( ( b0978 and b0979 ) or ( b0733 and b0734 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) CYTBO3_4pp (CYT-UBIQUINOL-OXID-RXN) cytochrome oxidase bo3 (ubiquinol-8: 4 protons) (periplasm) (4) h[c] + (0.5) o2[c] + q8h2[c] --> (4) h[p] + h2o[c] + q8[c] Oxidative Phosphorylation ( b0429 and b0430 and b0431 and b0432 ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) CYTD (CYTIDEAM2-RXN) cytidine deaminase [c] : cytd + h + h2o --> nh4 + uri Nucleotide Salvage Pathway 3.5.4.5 b2143 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) CYTDH (RXN0-361) Cytidine hydrolase [c] : cytd + h2o --> csn + rib-D Update 3.2.2.8 ( b2162 or b0651 or b0030 ) CYTDK2 (CYTIDINEKIN-RXN) cytidine kinase (GTP) [c] : cytd + gtp --> cmp + gdp + h Nucleotide Salvage Pathway b2066 ((RIGHT REMOVE PROTON)) CYTDt2pp (TRANS-RXN-108B) cytidine transport in via proton symport (periplasm) cytd[p] + h[p] --> cytd[c] + h[c] "Transport, Inner Membrane" ( b2393 or b2964 ) CYTDt2rpp (TRANS-RXN-108B) "cytidine transport in via proton symport, reversible (periplasm)" cytd[p] + h[p] <==> cytd[c] + h[c] "Transport, Inner Membrane" b2406 CYTDtex cytidine transport via diffusion (extracellular to periplasm) cytd[e] <==> cytd[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) CYTK1 (CMPKI-RXN) cytidylate kinase (CMP) [c] : atp + cmp <==> adp + cdp Nucleotide Salvage Pathway 2.7.4.14 b0910 CYTK2 (RXN-7913) cytidylate kinase (dCMP) [c] : atp + dcmp <==> adp + dcdp Nucleotide Salvage Pathway 2.7.4.14 b0910 (:METACYC) D-LACt2pp D-lactate transport via proton symport (periplasm) h[p] + lac-D[p] <==> h[c] + lac-D[c] "Transport, Inner Membrane" ( b3603 or b2975 ) D-LACtex D-lactate transport via diffusion (extracellular to periplasm) lac-D[e] <==> lac-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DAAD D-Amino acid dehydrogenase [c] : ala-D + fad + h2o --> fadh2 + nh4 + pyr Alanine and Aspartate Metabolism 1.4.99.1 b1189 DADA (ADDALT-RXN) Deoxyadenosine deaminase [c] : dad-2 + h + h2o --> din + nh4 Nucleotide Salvage Pathway b1623 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) DADK (|(DEOXY)ADENYLATE-KINASE-RXN|) deoxyadenylate kinase [c] : atp + damp <==> adp + dadp Nucleotide Salvage Pathway 2.7.4.11 b0474 (:METACYC) DADNt2pp (TRANS-RXN-108C) deoxyadenosine transport in via proton symport (periplasm) dad-2[p] + h[p] --> dad-2[c] + h[c] "Transport, Inner Membrane" ( b2964 or b2393 ) DADNtex deoxyadenosine transport via diffusion (extracellular to periplasm) dad-2[e] <==> dad-2[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) DAGK120 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C12:0) [c] : 12dgr120 + atp --> adp + h + pa120 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DAGK140 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C14:0) [c] : 12dgr140 + atp --> adp + h + pa140 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DAGK141 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C14:1) [c] : 12dgr141 + atp --> adp + h + pa141 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DAGK160 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C16:0) [c] : 12dgr160 + atp --> adp + h + pa160 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DAGK161 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C16:1) [c] : 12dgr161 + atp --> adp + h + pa161 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DAGK180 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C18:0) [c] : 12dgr180 + atp --> adp + h + pa180 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DAGK181 (DIACYLGLYKIN-RXN) diacylglycerol kinase (n-C18:1) [c] : 12dgr181 + atp --> adp + h + pa181 Glycerophospholipid Metabolism 2.7.1.107 b4042 ((RIGHT REMOVE PROTON)) DALAt2rpp (TRANS-RXN-62A) D-alanine transport via proton symport (periplasm) ala-D[p] + h[p] <==> ala-D[c] + h[c] "Transport, Inner Membrane" b4208 DALAtex D-Alanine transport via diffusion (extracellular to periplasm) ala-D[e] <==> ala-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DAMPtex dAMP transport via diffusion (extracellular to periplasm) damp[e] <==> damp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DAPAL (4.3.1.15-RXN) "2,3-diaminopropionate amonnia lyase" [c] : 23dappa + h2o --> (2) nh4 + pyr Update 4.3.1.15 b2871 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) DAPDC (DIAMINOPIMDECARB-RXN) diaminopimelate decarboxylase [c] : 26dap-M + h --> co2 + lys-L Threonine and Lysine Metabolism 4.1.1.20 b2838 ((LEFT REMOVE PROTON)) DAPE (DIAMINOPIMEPIM-RXN) diaminopimelate epimerase [c] : 26dap-LL <==> 26dap-M Threonine and Lysine Metabolism 5.1.1.7 b3809 DAPabcpp M-diaminopimelic acid ABC transport (periplasm) 26dap-M[p] + atp[c] + h2o[c] --> 26dap-M[c] + adp[c] + h[c] + pi[c] "Transport, Inner Membrane" DAPtex "1,5-Diaminopentane transport via diffusion (extracellular to periplasm)" 15dap[e] <==> 15dap[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DASYN120 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C12:0) [c] : ctp + h + pa120 --> cdpdddecg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DASYN140 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C14:0) [c] : ctp + h + pa140 --> cdpdtdecg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DASYN141 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C14:1) [c] : ctp + h + pa141 --> cdpdtdec7eg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DASYN160 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C16:0) [c] : ctp + h + pa160 --> cdpdhdecg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DASYN161 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C16:1) [c] : ctp + h + pa161 --> cdpdhdec9eg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DASYN180 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C18:0) [c] : ctp + h + pa180 --> cdpdodecg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DASYN181 (CDPDIGLYSYN-RXN) CDP-diacylglycerol synthetase (n-C18:1) [c] : ctp + h + pa181 --> cdpdodec11eg + ppi Glycerophospholipid Metabolism 2.7.7.41 b0175 ((LEFT REMOVE PROTON)) DATPHs dATP spontanous amine hydrolysis [c] : datp + h + h2o --> ditp + nh4 Update DB4PS (DIOHBUTANONEPSYN-RXN) "3,4-Dihydroxy-2-butanone-4-phosphate synthase" [c] : ru5p-D --> db4p + for + h Cofactor and Prosthetic Group Biosynthesis b3041 ((RIGHT REMOVE PROTON)) DBTS (DETHIOBIOTIN-SYN-RXN) dethiobiotin synthase [c] : atp + co2 + dann --> adp + dtbt + (3) h + pi Cofactor and Prosthetic Group Biosynthesis 6.3.3.3 b0778 ((RIGHT REMOVE PROTON)) DCAtex Decanoate transport via diffusion (extracellular to periplasm) dca[e] <==> dca[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DCMPtex dCMP transport via diffusion (extracellular to periplasm) dcmp[e] <==> dcmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DCTPD (DCTP-DEAM-RXN) dCTP deaminase [c] : dctp + h + h2o --> dutp + nh4 Nucleotide Salvage Pathway 3.5.4.13 b2065 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) DCYTD (CYTIDEAM-RXN) deoxycytidine deaminase [c] : dcyt + h + h2o --> duri + nh4 Nucleotide Salvage Pathway 3.5.4.14 b2143 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) DCYTt2pp (TRANS-RXN-108D) deoxycytidine transport in via proton symport (periplasm) dcyt[p] + h[p] --> dcyt[c] + h[c] "Transport, Inner Membrane" ( b2393 or b2964 ) DCYTtex deoxycytidine transport via diffusion (extracellular to periplasm) dcyt[e] <==> dcyt[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) ddca[e] --> ddca[p] "Transport, Outer Membrane" b2344 (:DIFFUSION) DDGALK (DEHYDDEOXGALACTKIN-RXN) 2-dehydro-3-deoxygalactonokinase [c] : 2dh3dgal + atp --> 2dh3dgal6p + adp + h Alternate Carbon Metabolism 2.7.1.58 b3693 ((RIGHT REMOVE PROTON)) DDGLCNt2rpp (TRANS-RXN-113) "2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible (periplasm)" 2ddglcn[p] + h[p] <==> 2ddglcn[c] + h[c] "Transport, Inner Membrane" b3909 DDGLCNtex 2-dehydro-3-deoxy-D-gluconate transport via diffusion (extracellular to periplasm) 2ddglcn[e] <==> 2ddglcn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DDGLK (DEOXYGLUCONOKIN-RXN) 2-dehydro-3-deoxygluconokinase [c] : 2ddglcn + atp --> 2ddg6p + adp + h Alternate Carbon Metabolism 2.7.1.45 b3526 ((RIGHT REMOVE PROTON)) DDPA (DAHPSYN-RXN) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase [c] : e4p + h2o + pep --> 2dda7p + pi "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.1.2.15 ( b2601 or b0754 or b1704 ) DDPGALA (DEHYDDEOXPHOSGALACT-ALDOL-RXN) 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [c] : 2dh3dgal6p <==> g3p + pyr Alternate Carbon Metabolism 4.1.2.21 b4477 DGK1 (GMKALT-RXN) deoxyguanylate kinase (dGMP:ATP) [c] : atp + dgmp <==> adp + dgdp Nucleotide Salvage Pathway 2.7.4.8 b3648 DGMPtex dGMP transport via diffusion (extracellular to periplasm) dgmp[e] <==> dgmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DGSNt2pp (TRANS-RXN-108) deoxyguanosine transport in via proton symport (periplasm) dgsn[p] + h[p] --> dgsn[c] + h[c] "Transport, Inner Membrane" b2964 (:EXPANDED-RXN-MATCH) DGSNtex deoxyguanosine transport via diffusion (extracellular to periplasm) dgsn[e] <==> dgsn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DHAD1 (DIHYDROXYISOVALDEHYDRAT-RXN) "dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)" [c] : 23dhmb --> 3mob + h2o "Valine, Leucine, and Isoleucine Metabolism" 4.2.1.9 b3771 DHAD2 (DIHYDROXYMETVALDEHYDRAT-RXN) "Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)" [c] : 23dhmp --> 3mop + h2o "Valine, Leucine, and Isoleucine Metabolism" b3771 DHAPT (2.7.1.121-RXN) Dihydroxyacetone phosphotransferase [c] : dha + pep --> dhap + pyr Alternate Carbon Metabolism ( b1200 and b1199 and b1198 and b2415 and b2416 ) DHAtex Dihydroxyacetone transport via diffusion (extracellular to periplasm) dha[e] <==> dha[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DHAtpp Dihydroxyacetone transport via facilitated diffusion (periplasm) dha[p] <==> dha[c] "Transport, Inner Membrane" (:DIFFUSION) DHBD (DHBDEHYD-RXN) "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" [c] : 23ddhb + nad <==> 23dhb + h + nadh Cofactor and Prosthetic Group Biosynthesis 1.3.1.28 b0596 ((RIGHT REMOVE PROTON)) DHBS (DHBAMPLIG-RXN) "2,3-dihydroxybenzoate adenylate synthase" [c] : 23dhb + atp + h --> 23dhba + ppi Update 2.7.7.58 b0594 ((LEFT REMOVE PROTON)) DHBSH "2,3-dihydroxybenzoylserine hydrolase" [c] : 23dhbzs + h2o --> 23dhb + ser-L Update DHCIND "2,3-dihydroxycinnamate dehydrogenase" [c] : cenchddd + nad --> dhcinnm + h + nadh Alternate Carbon Metabolism b2541 (:UNMAPPED-CPDS) DHCINDO "2,3-dihydroxycinnamate 1,2-dioxygenase" [c] : dhcinnm + o2 --> h + hkntd Alternate Carbon Metabolism b0348 (:UNMAPPED-CPDS) DHDPRy (DIHYDROPICRED-RXN) dihydrodipicolinate reductase (NADPH) [c] : 23dhdp + h + nadph --> nadp + thdp Threonine and Lysine Metabolism 1.3.1.26 b0031 (:EXPANDED-RXN-MATCH) DHDPS (DIHYDRODIPICSYN-RXN) dihydrodipicolinate synthase [c] : aspsa + pyr --> 23dhdp + h + (2) h2o Threonine and Lysine Metabolism 4.2.1.52 b2478 ((RIGHT REMOVE PROTON)) DHFR (DIHYDROFOLATEREDUCT-RXN) dihydrofolate reductase [c] : dhf + h + nadph <==> nadp + thf Cofactor and Prosthetic Group Biosynthesis 1.5.1.3 ( b1606 or b0048 ) ((LEFT REMOVE PROTON)) DHFS (DIHYDROFOLATESYNTH-RXN) dihydrofolate synthase [c] : atp + dhpt + glu-L --> adp + dhf + h + pi Cofactor and Prosthetic Group Biosynthesis 6.3.2.12 b2315 ((RIGHT REMOVE PROTON)) DHNAOT4 (DMK-RXN) "1,4-dihydroxy-2-naphthoate octaprenyltransferase" [c] : dhna + h + octdp --> 2dmmql8 + co2 + ppi Update b3930 ((LEFT REMOVE PROTON)) DHNPA2 (H2NEOPTERINALDOL-RXN) dihydroneopterin aldolase [c] : dhnpt --> 6hmhpt + gcald Cofactor and Prosthetic Group Biosynthesis b3058 DHORD2 dihydoorotic acid dehydrogenase (quinone8) [c] : dhor-S + q8 --> orot + q8h2 Purine and Pyrimidine Biosynthesis 1.3.3.1 b0945 DHORD5 dihydroorotic acid (menaquinone-8) [c] : dhor-S + mqn8 --> mql8 + orot Purine and Pyrimidine Biosynthesis 1.3.3.1 b0945 DHORTS (DIHYDROOROT-RXN) dihydroorotase [c] : dhor-S + h2o <==> cbasp + h Purine and Pyrimidine Biosynthesis 3.5.2.3 b1062 ((RIGHT REMOVE PROTON)) DHPPD (PHENPRODIOLDEHYDROG-RXN) "2,3-dihydroxyphenylpropionate dehydrogenase" [c] : cechddd + nad --> dhpppn + h + nadh Alternate Carbon Metabolism b2541 ((RIGHT REMOVE PROTON)) DHPPDA2 (RIBOFLAVINSYNDEAM-RXN) diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp) [c] : 25drapp + h + h2o --> 5apru + nh4 Cofactor and Prosthetic Group Biosynthesis 3.5.4.26 b0414 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) DHPS2 (H2PTEROATESYNTH-RXN) dihydropteroate synthase [c] : 4abz + 6hmhptpp --> dhpt + ppi Cofactor and Prosthetic Group Biosynthesis 2.5.1.15 b3177 DHPTDCs "4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)" [c] : dhptd --> h2o + hmfurn Methionine Metabolism (:UNMAPPED-CPDS) DHPTPE (H2NTPEPIM-RXN) dihydroneopterin triphosphate 2'-epimerase [c] : ahdt <==> dhmptp Update b2303 DHQD (3-DEHYDROQUINATE-DEHYDRATASE-RXN) 3-dehydroquinate dehydratase [c] : 3dhq <==> 3dhsk + h2o "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.2.1.10 b1693 DHQS (3-DEHYDROQUINATE-SYNTHASE-RXN) 3-dehydroquinate synthase [c] : 2dda7p --> 3dhq + pi "Tyrosine, Tryptophan, and Phenylalanine Metabolism" b3389 DIMPtex dIMP transport via diffusion (extracellular to periplasm) dimp[e] <==> dimp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DINSt2pp (TRANS-RXN-108E) deoxyinosine transport in via proton symport (periplasm) din[p] + h[p] --> din[c] + h[c] "Transport, Inner Membrane" b2964 DINStex deoxyinosine transport via diffusion (extracellular to periplasm) din[e] <==> din[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DKGLCNR1 (1.1.1.274-RXN) "2,5-diketo-D-gluconate reductase" [c] : 25dkglcn + h + nadph --> 2dhguln + nadp Alternate Carbon Metabolism ( b3012 or b0207 ) ((LEFT REMOVE PROTON)) DKGLCNR2x "2,5-diketo-D-gluconate reductase (NADH)" [c] : 25dkglcn + h + nadh --> 5dglcn + nad Alternate Carbon Metabolism b3553 DKGLCNR2y (YIAE1-RXN) "2,5-diketo-D-gluconate reductase (NADPH)" [c] : 25dkglcn + h + nadph --> 5dglcn + nadp Alternate Carbon Metabolism b3553 ((LEFT REMOVE PROTON)) DKMPPD "2,3-diketo-5-methylthio-1-phosphopentane degradation reaction" [c] : dkmpp + h2o + o2 --> 2kmb + for + (2) h + pi Arginine and Proline Metabolism DKMPPD3 "2,3-diketo-5-methylthio-1-phosphopentane degradation reaction" [c] : dkmpp + (3) h2o + (2) nad --> 2kmb + for + (4) h + (2) nadh + pi Arginine and Proline Metabolism DMATT (GPPSYN-RXN) dimethylallyltranstransferase [c] : dmpp + ipdp --> grdp + ppi Cofactor and Prosthetic Group Biosynthesis 2.5.1.1 b0421 DMPPS (RXN0-884) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp) [c] : h + h2mb4p + nadh --> dmpp + h2o + nad Cofactor and Prosthetic Group Biosynthesis b0029 (:EXPANDED-RXN-MATCH) DMQMT 3-Dimethylubiquinonol 3-methyltransferase [c] : 2omhmbl + amet --> ahcys + h + q8h2 Cofactor and Prosthetic Group Biosynthesis b2232 DMSOR1 Dimethyl sulfoxide reductase (Menaquinol 8) [c] : dmso + mql8 --> dms + h2o + mqn8 Oxidative Phosphorylation ( ( b0894 and b0895 and b0896 ) or ( b1587 and b1588 and b1589 and b1590 ) ) DMSOR1pp Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm) dmso[p] + mql8[c] --> dms[p] + h2o[p] + mqn8[c] Oxidative Phosphorylation ( b1872 and b1873 ) DMSOR2 Dimethyl sulfoxide reductase (Demethylmenaquinol 8) [c] : 2dmmql8 + dmso --> 2dmmq8 + dms + h2o Oxidative Phosphorylation ( b0894 and b0895 and b0896 ) DMSOR2pp Dimethyl sulfoxide reductase (Demethylmenaquinol 8) (periplasm) 2dmmql8[c] + dmso[p] --> 2dmmq8[c] + dms[p] + h2o[p] Oxidative Phosphorylation ( b1872 and b1873 ) DMSOtex Dimethyl sulfoxide transport via diffusion (extracellular to periplasm) dmso[e] <==> dmso[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DMStex Dimethyl sulfide transport via diffusion (extracellular to periplasm) dms[e] <==> dms[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DM_4HBA Sink needed to allow 4-hydroxy-benzoate to leave system [c] : 4hba --> (:EXCHANGE) DM_5DRIB Sink needed to allow 5'-deoxyribose to leave system [c] : 5drib --> (:EXCHANGE) DM_OXAM Sink needed to allow oxamate to leave system [c] : oxam --> (:EXCHANGE) DNMPPA (DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN) Dihydroneopterin monophosphate dephosphorylase [c] : dhpmp + h2o --> dhnpt + pi Cofactor and Prosthetic Group Biosynthesis DNTPPA (H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN) Dihydroneopterin triphosphate pyrophosphatase [c] : ahdt + h2o --> dhpmp + h + ppi Cofactor and Prosthetic Group Biosynthesis ( b0099 or b1865 ) ((RIGHT REMOVE PROTON)) DOGULNR (RXN0-703) "2,3 dioxo-L-gulonate reductase" [c] : 23doguln + h + nadh --> 3dhguln + nad Alternate Carbon Metabolism b3575 ((LEFT REMOVE PROTON)) DOPAtex dopamine transport via diffusion (extracellular to periplasm) dopa[e] <==> dopa[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DPCOAK (DEPHOSPHOCOAKIN-RXN) dephospho-CoA kinase [c] : atp + dpcoa --> adp + coa + h Cofactor and Prosthetic Group Biosynthesis 2.7.1.24 b0103 ((RIGHT REMOVE PROTON)) DPR (2-DEHYDROPANTOATE-REDUCT-RXN) 2-dehydropantoate 2-reductase [c] : 2dhp + h + nadph --> nadp + pant-R Cofactor and Prosthetic Group Biosynthesis 1.1.1.169 ( b0425 or b3774 ) ((LEFT REMOVE PROTON)) DRPA (DEOXYRIBOSE-P-ALD-RXN) deoxyribose-phosphate aldolase [c] : 2dr5p --> acald + g3p Alternate Carbon Metabolism 4.1.2.4 b4381 DSBAO1 DsbA protein reoxidation reaction (aerobic) dsbard[p] + q8[c] --> dsbaox[p] + q8h2[c] Update b1185 (:UNMAPPED-CPDS) DSBAO2 DsbA protein reoxidation reaction (anaerobic) dsbard[p] + mqn8[c] --> dsbaox[p] + mql8[c] Update b1185 (:UNMAPPED-CPDS) DSBCGT DsbC:glutathione thiotransferase [p] : dsbcox + (2) gthrd --> dsbcrd + gthox Update b2893 (:UNMAPPED-CPDS) DSBDR DsbD reductase [c] : dsbdox + trdrd --> dsbdrd + trdox Update b4136 (:UNMAPPED-CPDS) DSBGGT DsbG:glutathione thiotransferase [p] : dsbgox + (2) gthrd --> dsbgrd + gthox Update b0604 (:UNMAPPED-CPDS) DSERDHr D-serine dehydrogenase [c] : nadp + ser-D <==> 2amsa + h + nadph Update b1539 DSERt2rpp (RXN0-5130) D-serine transport via proton symport (periplasm) h[p] + ser-D[p] <==> h[c] + ser-D[c] "Transport, Inner Membrane" b4208 DSERtex D-serine transport via diffusion (extracellular to periplasm) ser-D[e] <==> ser-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DTMPK (DTMPKI-RXN) dTMP kinase [c] : atp + dtmp <==> adp + dtdp Nucleotide Salvage Pathway 2.7.4.9 b1098 DTMPtex dTMP transport via diffusion (extracellular to periplasm) dtmp[e] <==> dtmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DUMPtex dUMP transport via diffusion (extracellular to periplasm) dump[e] <==> dump[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) DURIK1 (DURIDKI-RXN) deoxyuridine kinase (ATP:Deoxyuridine) [c] : atp + duri --> adp + dump + h Nucleotide Salvage Pathway b1238 ((RIGHT REMOVE PROTON)) DURIPP (URA-PHOSPH-RXN) deoxyuridine phosphorylase [c] : duri + pi <==> 2dr1p + ura Nucleotide Salvage Pathway ( b4382 or b4384 ) DURIt2pp (TRANS-RXN-108F) deoxyuridine transport in via proton symport (periplasm) duri[p] + h[p] --> duri[c] + h[c] "Transport, Inner Membrane" ( b2964 or b2393 ) DURItex deoxyuridine transport via diffusion (extracellular to periplasm) duri[e] <==> duri[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) DUTPDP (DUTP-PYROP-RXN) dUTP diphosphatase [c] : dutp + h2o --> dump + h + ppi Nucleotide Salvage Pathway 3.6.1.23 b3640 ((RIGHT REMOVE PROTON)) DXPRIi (DXPREDISOM-RXN) 1-deoxy-D-xylulose reductoisomerase [c] : dxyl5p + h + nadph --> 2me4p + nadp Cofactor and Prosthetic Group Biosynthesis b0173 ((LEFT REMOVE PROTON)) DXPS (DXS-RXN) 1-deoxy-D-xylulose 5-phosphate synthase [c] : g3p + h + pyr --> co2 + dxyl5p Cofactor and Prosthetic Group Biosynthesis b0420 ((LEFT REMOVE PROTON)) DXYLK (RXN0-382) 1-Deoxy-D-xylulose kinase [c] : atp + dxyl --> adp + dxyl5p + h Cofactor and Prosthetic Group Biosynthesis b3564 ((RIGHT REMOVE PROTON)) E4PD (ERYTH4PDEHYDROG-RXN) Erythrose 4-phosphate dehydrogenase [c] : e4p + h2o + nad <==> 4per + (2) h + nadh Cofactor and Prosthetic Group Biosynthesis b2927 ((RIGHT REMOVE PROTON)) EAR100x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C10:0) [c] : h + nadh + tdec2eACP --> dcaACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR100y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C10:0) [c] : h + nadph + tdec2eACP --> dcaACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR120x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:0) [c] : h + nadh + tddec2eACP --> ddcaACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR120y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:0) [c] : h + nadph + tddec2eACP --> ddcaACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR121x enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1) [c] : h + nadh + t3c5ddeceACP --> cddec5eACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 EAR121y (RXN0-2145) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:1) [c] : h + nadph + t3c5ddeceACP --> cddec5eACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 ((LEFT REMOVE PROTON)) EAR140x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:0) [c] : h + nadh + tmrs2eACP --> myrsACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR140y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:0) [c] : h + nadph + tmrs2eACP --> myrsACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR141x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:1) [c] : h + nadh + t3c7mrseACP --> nad + tdeACP Cell Envelope Biosynthesis 1.3.1.9 b1288 ((LEFT REMOVE PROTON)) EAR141y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:1) [c] : h + nadph + t3c7mrseACP --> nadp + tdeACP Cell Envelope Biosynthesis 1.3.1.10 b1288 ((LEFT REMOVE PROTON)) EAR160x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:0) [c] : h + nadh + tpalm2eACP --> nad + palmACP Cell Envelope Biosynthesis 1.3.1.9 b1288 ((LEFT REMOVE PROTON)) EAR160y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:0) [c] : h + nadph + tpalm2eACP --> nadp + palmACP Cell Envelope Biosynthesis 1.3.1.10 b1288 ((LEFT REMOVE PROTON)) EAR161x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:1) [c] : h + nadh + t3c9palmeACP --> hdeACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR161y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:1) [c] : h + nadph + t3c9palmeACP --> hdeACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR180x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:0) [c] : h + nadh + toctd2eACP --> nad + ocdcaACP Cell Envelope Biosynthesis 1.3.1.9 b1288 ((LEFT REMOVE PROTON)) EAR180y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:0) [c] : h + nadph + toctd2eACP --> nadp + ocdcaACP Cell Envelope Biosynthesis 1.3.1.10 b1288 ((LEFT REMOVE PROTON)) EAR181x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:1) [c] : h + nadh + t3c11vaceACP --> nad + octeACP Cell Envelope Biosynthesis 1.3.1.9 b1288 ((LEFT REMOVE PROTON)) EAR181y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:1) [c] : h + nadph + t3c11vaceACP --> nadp + octeACP Cell Envelope Biosynthesis 1.3.1.10 b1288 ((LEFT REMOVE PROTON)) EAR40x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C4:0) [c] : but2eACP + h + nadh --> butACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR40y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C4:0) [c] : but2eACP + h + nadph --> butACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR60x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C6:0) [c] : h + nadh + thex2eACP --> hexACP + nad Cell Envelope Biosynthesis 1.3.1.9 b1288 ((LEFT REMOVE PROTON)) EAR60y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0) [c] : h + nadph + thex2eACP --> hexACP + nadp Cell Envelope Biosynthesis 1.3.1.10 b1288 ((LEFT REMOVE PROTON)) EAR80x (ENOYL-ACP-REDUCT-NADH-RXN) enoyl-[acyl-carrier-protein] reductase (NADH) (n-C8:0) [c] : h + nadh + toct2eACP --> nad + ocACP Cell Envelope Biosynthesis 1.3.1.9 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) EAR80y (ENOYL-ACP-REDUCT-NADPH-RXN) enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C8:0) [c] : h + nadph + toct2eACP --> nadp + ocACP Cell Envelope Biosynthesis 1.3.1.10 b1288 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) ECA4COLIPAtex enterobacterial common antigen (x4) core oligosaccharide lipid A transport (periplasm to extracellular) eca4colipa[p] --> eca4colipa[e] Lipopolysaccharide Biosynthesis / Recycling (:UNMAPPED-CPDS) ECA4OALpp enterobacterial common antigen (x4) O-antigen ligase (periplasm) [p] : colipa + eca4und --> eca4colipa + h + udcpdp Lipopolysaccharide Biosynthesis / Recycling b3622 (:UNMAPPED-CPDS) ECAP1pp enterobacterial common antigen polymerase (periplasm) [p] : (2) unagamuf --> eca2und + h + udcpdp Lipopolysaccharide Biosynthesis / Recycling ( b3793 and b3785 ) (:UNMAPPED-CPDS) ECAP2pp enterobacterial common antigen polymerase (periplasm) [p] : eca2und + unagamuf --> eca3und + h + udcpdp Lipopolysaccharide Biosynthesis / Recycling ( b3793 and b3785 ) (:UNMAPPED-CPDS) ECAP3pp enterobacterial common antigen polymerase (periplasm) [p] : eca3und + unagamuf --> eca4und + h + udcpdp Lipopolysaccharide Biosynthesis / Recycling ( b3793 and b3785 ) (:UNMAPPED-CPDS) ECAtpp "enterobacterial common antigen transferase (flippase, cytoplasm to periplasm)" unagamuf[c] --> unagamuf[p] Lipopolysaccharide Biosynthesis / Recycling b3792 (:DIFFUSION) ECOAH1 3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA) [c] : 3hbcoa <==> b2coa + h2o Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) ECOAH2 3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA) [c] : 3hhcoa <==> h2o + hx2coa Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) ECOAH3 (ENOYL-COA-HYDRAT-RXN) 3-hydroxyacyl-CoA dehydratase (3-hydroxyoctanoyl-CoA) [c] : 3hocoa <==> h2o + oc2coa Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) ECOAH4 (ENOYL-COA-HYDRAT-RXN) 3-hydroxyacyl-CoA dehydratase (3-hydroxydecanoyl-CoA) [c] : 3hdcoa <==> dc2coa + h2o Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) (:EXPANDED-RXN-MATCH) ECOAH5 (ENOYL-COA-HYDRAT-RXN) 3-hydroxyacyl-CoA dehydratase (3-hydroxydodecanoyl-CoA) [c] : 3hddcoa <==> dd2coa + h2o Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) (:METACYC :EXPANDED-RXN-MATCH) ECOAH6 (ENOYL-COA-HYDRAT-RXN) 3-hydroxyacyl-CoA dehydratase (3-hydroxytetradecanoyl-CoA) [c] : 3htdcoa <==> h2o + td2coa Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) ECOAH7 (ENOYL-COA-HYDRAT-RXN) 3-hydroxyacyl-CoA dehydratase (3-hydroxyhexadecanoyl-CoA) [c] : 3hhdcoa <==> h2o + hdd2coa Membrane Lipid Metabolism 4.2.1.17 ( b2341 or b3846 ) ECOAH8 (ENOYL-COA-HYDRAT-RXN) 3-hydroxyacyl-CoA dehydratase (3-hydroxyoctadecanoyl-CoA) [c] : 3hodcoa <==> h2o + od2coa Membrane Lipid Metabolism 4.2.1.17 ( b3846 or b2341 ) EDA (KDPGALDOL-RXN) 2-dehydro-3-deoxy-phosphogluconate aldolase [c] : 2ddg6p --> g3p + pyr Pentose Phosphate Pathway 4.1.2.14 b1850 EDD (PGLUCONDEHYDRAT-RXN) 6-phosphogluconate dehydratase [c] : 6pgc --> 2ddg6p + h2o Pentose Phosphate Pathway 4.2.1.12 b1851 EDTXS1 (LAUROYLACYLTRAN-RXN) Endotoxin Synthesis (lauroyl transferase) [c] : ddcaACP + kdo2lipid4 --> ACP + kdo2lipid4L Lipopolysaccharide Biosynthesis / Recycling b1054 EDTXS2 (MYRISTOYLACYLTRAN-RXN) Endotoxin Synthesis (myristoyl transferase) [c] : kdo2lipid4L + myrsACP --> ACP + lipa Lipopolysaccharide Biosynthesis / Recycling b1855 EDTXS3 (PALMITOTRANS-RXN) Endotoxin Synthesis (palmitoleoyl ACP) [c] : hdeACP + kdo2lipid4 --> ACP + kdo2lipid4p Lipopolysaccharide Biosynthesis / Recycling b2378 EDTXS4 (MYRPALMTRAN-RXN) Endotoxin Synthesis (myristoyl transferase) [c] : kdo2lipid4p + myrsACP --> ACP + lipa_cold Lipopolysaccharide Biosynthesis / Recycling b1855 ENLIPAtex phosphoethanolamine lipid A transport via vector (periplasm to extracellular) enlipa[p] --> enlipa[e] Lipopolysaccharide Biosynthesis / Recycling (:DIFFUSION) ENO (2PGADEHYDRAT-RXN) enolase [c] : 2pg <==> h2o + pep Glycolysis/Gluconeogenesis 4.2.1.11 b2779 ENTCS (ENTG-RXN) enterochelin synthase [c] : (3) 23dhba + (3) seramp --> (6) amp + enter + (9) h Update b0583 ((RIGHT REMOVE PROTON)) ENTERES (RXN0-1661) Enterochelin Esterase [c] : enter + (3) h2o --> (3) 23dhbzs + (3) h Update b0585 ((RIGHT REMOVE PROTON)) ENTERES2 Enterochelin Esterase (Fe containing) [c] : feenter + (3) h2o --> (3) 23dhbzs + fe3 + (3) h Update b0585 ETHAAL (ETHAMLY-RXN) Ethanolamine ammonia-lyase [c] : etha --> acald + nh4 Cell Envelope Biosynthesis 4.3.1.7 ( b2440 and b2441 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) ETHAt2pp ethanolamine transport in/out via proton symport etha[p] + h[p] <==> etha[c] + h[c] Update ETHAtex ethanolamine transport via diffusion (extracellular) etha[e] <==> etha[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ETHSO3abcpp (ABC-64-RXN) ethanesulfonate transport via ABC system (periplasm) atp[c] + ethso3[p] + h2o[c] --> adp[c] + ethso3[c] + h[c] + pi[c] Update ( b0936 and b0933 and b0934 ) ((RIGHT REMOVE PROTON)) ETHSO3tex ethanesulfonate transport via diffusion (extracellular to periplasm) ethso3[e] <==> ethso3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) ETOHt2rpp ethanol reversible transport via proton symport (periplasm) etoh[p] + h[p] <==> etoh[c] + h[c] "Transport, Inner Membrane" ETOHtex ethanol transport via diffusion (extracellular to periplasm) etoh[e] <==> etoh[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) EX_12ppd-R(e) "(R)-Propane-1,2-diol exchange" [e] : 12ppd-R <==> (:EXCHANGE) EX_12ppd-S(e) "(S)-Propane-1,2-diol exchange" [e] : 12ppd-S <==> (:EXCHANGE) EX_14glucan(e) "1,4-alpha-D-glucan exchange" [e] : 14glucan <==> (:EXCHANGE) EX_15dap(e) "1,5-Diaminopentane exchange" [e] : 15dap <==> (:EXCHANGE) EX_23camp(e) "2',3'-Cyclic AMP exchange" [e] : 23camp <==> (:EXCHANGE) EX_23ccmp(e) "2',3'-Cyclic CMP exchange" [e] : 23ccmp <==> (:EXCHANGE) EX_23cgmp(e) "2',3'-Cyclic GMP exchange" [e] : 23cgmp <==> (:EXCHANGE) EX_23cump(e) "2',3'-Cyclic UMP exchange" [e] : 23cump <==> (:EXCHANGE) EX_23dappa "2,3-diaminopropionate exchange" [e] : 23dappa <==> (:EXCHANGE) EX_26dap-M(e) "meso-2,6-Diaminoheptanedioate exchange" [e] : 26dap-M <==> (:EXCHANGE) EX_2ddglcn(e) 2-Dehydro-3-deoxy-D-gluconate exchange [e] : 2ddglcn <==> (:EXCHANGE) EX_34dhpac(e) "3,4-Dihydroxyphenylacetaldehyde exchange" [e] : 34dhpac <==> (:EXCHANGE) EX_3amp(e) 3'-AMP exchange [e] : 3amp <==> (:EXCHANGE) EX_3cmp(e) 3'-cmp exchange [e] : 3cmp <==> (:EXCHANGE) EX_3gmp(e) 3'-GMP exchange [e] : 3gmp <==> (:EXCHANGE) EX_3hcinnm(e) 3-hydroxycinnamic acid exchange [e] : 3hcinnm <==> (:EXCHANGE) EX_3hpppn(e) 3-(3-hydroxy-phenyl)propionate exchange [e] : 3hpppn <==> (:EXCHANGE) EX_3ump(e) 3'-UMP exchange [e] : 3ump <==> (:EXCHANGE) EX_4abut(e) 4-Aminobutanoate exchange [e] : 4abut <==> (:EXCHANGE) EX_4hoxpacd(e) 4-Hydroxyphenylacetaldehyde exchange [e] : 4hoxpacd <==> (:EXCHANGE) EX_5dglcn(e) 5-Dehydro-D-gluconate exchange [e] : 5dglcn <==> (:EXCHANGE) EX_LalaDgluMdap(e) "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate exchange" [e] : LalaDgluMdap <==> (:EXCHANGE) EX_LalaDgluMdapDala(e) "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine exchange" [e] : LalaDgluMdapDala <==> (:EXCHANGE) EX_ac(e) Acetate exchange [e] : ac <==> (:EXCHANGE) EX_acac(e) Acetoacetate exchange [e] : acac <==> (:EXCHANGE) EX_acald(e) Acetaldehyde exchange [e] : acald <==> (:EXCHANGE) EX_acgal(e) N-Acetyl-D-galactosamine exchange [e] : acgal <==> (:EXCHANGE) EX_acgal1p(e) N-Acetyl-D-galactosamine 1-phosphate exchange [e] : acgal1p <==> (:EXCHANGE) EX_acgam(e) N-Acetyl-D-glucosamine exchange [e] : acgam <==> (:EXCHANGE) EX_acgam1p(e) N-Acetyl-D-glucosamine 1-phosphate exchange [e] : acgam1p <==> (:EXCHANGE) EX_acmana(e) N-Acetyl-D-mannosamine exchange [e] : acmana <==> (:EXCHANGE) EX_acmum(e) N-Acetylmuramate exchange [e] : acmum <==> (:EXCHANGE) EX_acnam(e) N-Acetylneuraminate exchange [e] : acnam <==> (:EXCHANGE) EX_acolipa(e) 4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A exchange [e] : acolipa <==> (:EXCHANGE) EX_acser(e) O-Acetyl-L-serine exchange [e] : acser <==> (:EXCHANGE) EX_ade(e) Adenine exchange [e] : ade <==> (:EXCHANGE) EX_adn(e) Adenosine exchange [e] : adn <==> (:EXCHANGE) EX_adocbl(e) Adenosylcobalamin exchange [e] : adocbl <==> (:EXCHANGE) EX_ag(e) silver exchange [e] : ag <==> (:EXCHANGE) EX_agm(e) Agmatine exchange [e] : agm <==> (:EXCHANGE) EX_akg(e) 2-Oxoglutarate exchange [e] : akg <==> (:EXCHANGE) EX_ala-B(e) beta-Alanine exchange [e] : ala-B <==> (:EXCHANGE) EX_ala-D(e) D-Alanine exchange [e] : ala-D <==> (:EXCHANGE) EX_ala-L(e) L-Alanine exchange [e] : ala-L <==> (:EXCHANGE) EX_alaala(e) D-Alanyl-D-alanine exchange [e] : alaala <==> (:EXCHANGE) EX_all-D(e) D-Allose exchange [e] : all-D <==> (:EXCHANGE) EX_alltn(e) Allantoin exchange [e] : alltn <==> (:EXCHANGE) EX_amp(e) AMP exchange [e] : amp <==> (:EXCHANGE) EX_anhgm(e) N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid exchange [e] : anhgm <==> (:EXCHANGE) EX_arab-L(e) L-Arabinose exchange [e] : arab-L <==> (:EXCHANGE) EX_arbtn(e) aerobactin minus Fe3 exchange [e] : arbtn <==> (:EXCHANGE) EX_arbtn-fe3(e) Aerobactin exchange [e] : arbtn-fe3 <==> (:EXCHANGE) EX_arg-L(e) L-Arginine exchange [e] : arg-L <==> (:EXCHANGE) EX_ascb-L(e) L-Ascorbate exchange [e] : ascb-L <==> (:EXCHANGE) EX_asn-L(e) L-Asparagine exchange [e] : asn-L <==> (:EXCHANGE) EX_aso3(e) arsenite exchange [e] : aso3 <==> (:EXCHANGE) EX_asp-L(e) L-Aspartate exchange [e] : asp-L <==> (:EXCHANGE) EX_but(e) Butyrate (n-C4:0) exchange [e] : but <==> (:EXCHANGE) EX_butso3(e) butanesulfonate exchange [e] : butso3 <==> (:EXCHANGE) EX_ca2(e) Calcium exchange [e] : ca2 <==> (:EXCHANGE) EX_cbi(e) Cobinamide exchange [e] : cbi <==> (:EXCHANGE) EX_cbl1(e) Cob(I)alamin exchange [e] : cbl1 <==> (:EXCHANGE) EX_cd2(e) Cadmium exchange [e] : cd2 <==> (:EXCHANGE) EX_cgly(e) Cys-Gly exchange [e] : cgly <==> (:EXCHANGE) EX_chol(e) Choline exchange [e] : chol <==> (:EXCHANGE) EX_cit(e) Citrate exchange [e] : cit <==> (:EXCHANGE) EX_cl(e) Chloride exchange [e] : cl <==> (:EXCHANGE) EX_cmp(e) CMP exchange [e] : cmp <==> (:EXCHANGE) EX_co2(e) CO2 exchange [e] : co2 <==> (:EXCHANGE) EX_cobalt2(e) Co2+ exchange [e] : cobalt2 <==> (:EXCHANGE) EX_colipa(e) core oligosaccharide lipid A exchange [e] : colipa <==> (:EXCHANGE) EX_cpgn(e) coprogen exchange [e] : cpgn <==> (:EXCHANGE) EX_cpgn-un(e) coprogen unloaded (no Fe(III)) exchange [e] : cpgn-un <==> (:EXCHANGE) EX_crn(e) L-Carnitine exchange [e] : crn <==> (:EXCHANGE) EX_csn(e) Cytosine exchange [e] : csn <==> (:EXCHANGE) EX_cu(e) Cu+ exchange [e] : cu <==> (:EXCHANGE) EX_cu2(e) Cu2+ exchange [e] : cu2 <==> (:EXCHANGE) EX_cyan(e) Hydrogen cyanide exchange [e] : cyan <==> (:EXCHANGE) EX_cynt(e) Cyanate exchange [e] : cynt <==> (:EXCHANGE) EX_cys-D(e) D-Cysteine exchange [e] : cys-D <==> (:EXCHANGE) EX_cys-L(e) L-Cysteine exchange [e] : cys-L <==> (:EXCHANGE) EX_cytd(e) Cytidine exchange [e] : cytd <==> (:EXCHANGE) EX_dad-2(e) Deoxyadenosine exchange [e] : dad-2 <==> (:EXCHANGE) EX_damp(e) dAMP exchange [e] : damp <==> (:EXCHANGE) EX_dca(e) Decanoate (n-C10:0) exchange [e] : dca <==> (:EXCHANGE) EX_dcmp(e) dCMP exchange [e] : dcmp <==> (:EXCHANGE) EX_dcyt(e) Deoxycytidine exchange [e] : dcyt <==> (:EXCHANGE) EX_ddca(e) Dodecanoate (n-C12:0) exchange [e] : ddca <==> (:EXCHANGE) EX_dgmp(e) dGMP exchange [e] : dgmp <==> (:EXCHANGE) EX_dgsn(e) Deoxyguanosine exchange [e] : dgsn <==> (:EXCHANGE) EX_dha(e) Dihydroxyacetone exchange [e] : dha <==> (:EXCHANGE) EX_dimp(e) dIMP exchange [e] : dimp <==> (:EXCHANGE) EX_din(e) Deoxyinosine exchange [e] : din <==> (:EXCHANGE) EX_dms(e) Dimethyl sulfide exchange [e] : dms <==> (:EXCHANGE) EX_dmso(e) Dimethyl sulfoxide exchange [e] : dmso <==> (:EXCHANGE) EX_dopa(e) Dopamine exchange [e] : dopa <==> (:EXCHANGE) EX_dtmp(e) dTMP exchange [e] : dtmp <==> (:EXCHANGE) EX_dump(e) dUMP exchange [e] : dump <==> (:EXCHANGE) EX_duri(e) Deoxyuridine exchange [e] : duri <==> (:EXCHANGE) EX_eca4colipa(e) (enterobacterial common antigen)x4 core oligosaccharide lipid A exchange [e] : eca4colipa <==> (:EXCHANGE) EX_enlipa(e) phosphoethanolamine KDO(2)-lipid (A) exchange [e] : enlipa <==> (:EXCHANGE) EX_enter(e) Enterochelin exchange [e] : enter <==> (:EXCHANGE) EX_etha(e) Ethanolamine exchange [e] : etha <==> (:EXCHANGE) EX_ethso3(e) ethanesulfonate exchange [e] : ethso3 <==> (:EXCHANGE) EX_etoh(e) Ethanol exchange [e] : etoh <==> (:EXCHANGE) EX_f6p(e) D-fructose 6-phosphate exchange [e] : f6p <==> (:EXCHANGE) EX_fald(e) Formaldehyde exchange [e] : fald <==> (:EXCHANGE) EX_fe2(e) Fe2+ exchange [e] : fe2 <==> (:EXCHANGE) EX_fe3(e) Fe3+ exchange [e] : fe3 <==> (:EXCHANGE) EX_fe3dcit(e) Fe(III)dicitrate exchange [e] : fe3dcit <==> (:EXCHANGE) EX_fe3dhbzs(e) "ferric 2,3-dihydroxybenzoylserine exchange" [e] : fe3dhbzs <==> (:EXCHANGE) EX_fe3hox(e) Fe(III)hydroxamate exchange [e] : fe3hox <==> (:EXCHANGE) EX_fe3hox-un(e) "Fe(III)hydoxamate, unloaded exchange" [e] : fe3hox-un <==> (:EXCHANGE) EX_fecrm(e) Ferrichrome exchange [e] : fecrm <==> (:EXCHANGE) EX_fecrm-un(e) Ferrichrome minus Fe(III) exchange [e] : fecrm-un <==> (:EXCHANGE) EX_feenter(e) Fe-enterobactin exchange [e] : feenter <==> (:EXCHANGE) EX_feoxam(e) ferroxamine exchange [e] : feoxam <==> (:EXCHANGE) EX_feoxam-un(e) ferroxamine minus Fe(3) exchange [e] : feoxam-un <==> (:EXCHANGE) EX_for(e) Formate exchange [e] : for <==> (:EXCHANGE) EX_fru(e) D-Fructose exchange [e] : fru <==> (:EXCHANGE) EX_frulys(e) fructoselysine exchange [e] : frulys <==> (:EXCHANGE) EX_fruur(e) D-Fructuronate exchange [e] : fruur <==> (:EXCHANGE) EX_fuc-L(e) L-Fucose exchange [e] : fuc-L <==> (:EXCHANGE) EX_fum(e) Fumarate exchange [e] : fum <==> (:EXCHANGE) EX_g1p(e) D-Glucose 1-phosphate exchange [e] : g1p <==> (:EXCHANGE) EX_g3pc(e) sn-Glycero-3-phosphocholine exchange [e] : g3pc <==> (:EXCHANGE) EX_g3pe(e) sn-Glycero-3-phosphoethanolamine exchange [e] : g3pe <==> (:EXCHANGE) EX_g3pg(e) Glycerophosphoglycerol exchange [e] : g3pg <==> (:EXCHANGE) EX_g3pi(e) sn-Glycero-3-phospho-1-inositol exchange [e] : g3pi <==> (:EXCHANGE) EX_g3ps(e) Glycerophosphoserine exchange [e] : g3ps <==> (:EXCHANGE) EX_g6p(e) D-Glucose 6-phosphate exchange [e] : g6p <==> (:EXCHANGE) EX_gal(e) D-Galactose exchange [e] : gal <==> (:EXCHANGE) EX_gal-bD(e) beta D-Galactose exchange [e] : gal-bD <==> (:EXCHANGE) EX_gal1p(e) alpha-D-Galactose 1-phosphate exchange [e] : gal1p <==> (:EXCHANGE) EX_galct-D(e) D-Galactarate exchange [e] : galct-D <==> (:EXCHANGE) EX_galctn-D(e) D-Galactonate exchange [e] : galctn-D <==> (:EXCHANGE) EX_galctn-L(e) L-Galactonate exchange [e] : galctn-L <==> (:EXCHANGE) EX_galt(e) Galactitol exchange [e] : galt <==> (:EXCHANGE) EX_galur(e) D-Galacturonate exchange [e] : galur <==> (:EXCHANGE) EX_gam(e) D-Glucosamine exchange [e] : gam <==> (:EXCHANGE) EX_gam6p(e) D-Glucosamine 6-phosphate exchange [e] : gam6p <==> (:EXCHANGE) EX_gbbtn(e) gamma-butyrobetaine exchange [e] : gbbtn <==> (:EXCHANGE) EX_gdp(e) GDP exchange [e] : gdp <==> (:EXCHANGE) EX_glc(e) D-Glucose exchange [e] : glc-D <==> (:EXCHANGE) EX_glcn(e) D-Gluconate exchange [e] : glcn <==> (:EXCHANGE) EX_glcr(e) D-Glucarate exchange [e] : glcr <==> (:EXCHANGE) EX_glcur(e) D-Glucuronate exchange [e] : glcur <==> (:EXCHANGE) EX_glcur1p(e) D-Glucuronate 1-phosphate exchange [e] : glcur1p <==> (:EXCHANGE) EX_gln-L(e) L-Glutamine exchange [e] : gln-L <==> (:EXCHANGE) EX_glu-L(e) L-Glutamate exchange [e] : glu-L <==> (:EXCHANGE) EX_gly(e) Glycine exchange [e] : gly <==> (:EXCHANGE) EX_glyald(e) D-Glyceraldehyde exchange [e] : glyald <==> (:EXCHANGE) EX_glyb(e) Glycine betaine exchange [e] : glyb <==> (:EXCHANGE) EX_glyc(e) Glycerol exchange [e] : glyc <==> (:EXCHANGE) EX_glyc-R(e) (R)-Glycerate exchange [e] : glyc-R <==> (:EXCHANGE) EX_glyc2p(e) Glycerol 2-phosphate exchange [e] : glyc2p <==> (:EXCHANGE) EX_glyc3p(e) Glycerol 3-phosphate exchange [e] : glyc3p <==> (:EXCHANGE) EX_glyclt(e) Glycolate exchange [e] : glyclt <==> (:EXCHANGE) EX_gmp(e) GMP exchange [e] : gmp <==> (:EXCHANGE) EX_gsn(e) Guanosine exchange [e] : gsn <==> (:EXCHANGE) EX_gthox(e) Oxidized glutathione exchange [e] : gthox <==> (:EXCHANGE) EX_gthrd(e) Reduced glutathione exchange [e] : gthrd <==> (:EXCHANGE) EX_gtp(e) GTP exchange [e] : gtp <==> (:EXCHANGE) EX_gua(e) Guanine exchange [e] : gua <==> (:EXCHANGE) EX_h(e) H+ exchange [e] : h <==> (:EXCHANGE) EX_h2(e) H2 exchange [e] : h2 <==> (:EXCHANGE) EX_h2o(e) H2O exchange [e] : h2o <==> (:EXCHANGE) EX_h2o2(e) Hydrogen peroxide exchange [e] : h2o2 <==> (:EXCHANGE) EX_h2s(e) Hydrogen sulfide exchange [e] : h2s <==> (:EXCHANGE) EX_hacolipa(e) hepta-acylated core oligosaccharide lipid A (E. coli) exchange [e] : hacolipa <==> (:EXCHANGE) EX_halipa(e) hepta-acylated KDO(2)-lipid (A) exchange [e] : halipa <==> (:EXCHANGE) EX_hdca(e) Hexadecanoate (n-C16:0) exchange [e] : hdca <==> (:EXCHANGE) EX_hdcea(e) hexadecenoate (n-C16:1) exchange [e] : hdcea <==> (:EXCHANGE) EX_hg2(e) Hg2+ exchange [e] : hg2 <==> (:EXCHANGE) EX_his-L(e) L-Histidine exchange [e] : his-L <==> (:EXCHANGE) EX_hom-L(e) L-Homoserine exchange [e] : hom-L <==> (:EXCHANGE) EX_hxa(e) Hexanoate (n-C6:0) exchange [e] : hxa <==> (:EXCHANGE) EX_hxan(e) Hypoxanthine exchange [e] : hxan <==> (:EXCHANGE) EX_idon-L(e) L-Idonate exchange [e] : idon-L <==> (:EXCHANGE) EX_ile-L(e) L-Isoleucine exchange [e] : ile-L <==> (:EXCHANGE) EX_imp(e) IMP exchange [e] : imp <==> (:EXCHANGE) EX_indole(e) Indole exchange [e] : indole <==> (:EXCHANGE) EX_inost(e) myo-Inositol exchange [e] : inost <==> (:EXCHANGE) EX_ins(e) Inosine exchange [e] : ins <==> (:EXCHANGE) EX_isetac(e) Isethionic acid exchange [e] : isetac <==> (:EXCHANGE) EX_k(e) K+ exchange [e] : k <==> (:EXCHANGE) EX_kdo2lipid4(e) KDO(2)-lipid IV(A) exchange [e] : kdo2lipid4 <==> (:EXCHANGE) EX_lac-D(e) D-lactate exchange [e] : lac-D <==> (:EXCHANGE) EX_lac-L(e) L-Lactate exchange [e] : lac-L <==> (:EXCHANGE) EX_lcts(e) Lactose exchange [e] : lcts <==> (:EXCHANGE) EX_leu-L(e) L-Leucine exchange [e] : leu-L <==> (:EXCHANGE) EX_lipa(e) KDO(2)-lipid (A) exchange [e] : lipa <==> (:EXCHANGE) EX_lipa_cold(e) cold adapted KDO(2)-lipid (A) exchange [e] : lipa_cold <==> (:EXCHANGE) EX_lys-L(e) L-Lysine exchange [e] : lys-L <==> (:EXCHANGE) EX_lyx-L(e) L-Lyxose exchange [e] : lyx-L <==> (:EXCHANGE) EX_mal-D(e) D-Malate exchange [e] : mal-D <==> (:EXCHANGE) EX_mal-L(e) L-Malate exchange [e] : mal-L <==> (:EXCHANGE) EX_malt(e) Maltose exchange [e] : malt <==> (:EXCHANGE) EX_malthx(e) Maltohexaose exchange [e] : malthx <==> (:EXCHANGE) EX_maltpt(e) Maltopentaose exchange [e] : maltpt <==> (:EXCHANGE) EX_malttr(e) Maltotriose exchange [e] : malttr <==> (:EXCHANGE) EX_maltttr(e) Maltotetraose exchange [e] : maltttr <==> (:EXCHANGE) EX_man(e) D-Mannose exchange [e] : man <==> (:EXCHANGE) EX_man6p(e) D-Mannose 6-phosphate exchange [e] : man6p <==> (:EXCHANGE) EX_manglyc(e) 2(alpha-D-Mannosyl)-D-glycerate exchange [e] : manglyc <==> (:EXCHANGE) EX_melib(e) Melibiose exchange [e] : melib <==> (:EXCHANGE) EX_met-D(e) D-Methionine exchange [e] : met-D <==> (:EXCHANGE) EX_met-L(e) L-Methionine exchange [e] : met-L <==> (:EXCHANGE) EX_metsox-R-L(e) L-methionine-R-sulfoxide exchange [e] : metsox-R-L <==> (:EXCHANGE) EX_metsox-S-L(e) L-Methionine S-oxide exchange [e] : metsox-S-L <==> (:EXCHANGE) EX_mg2(e) Mg exchange [e] : mg2 <==> (:EXCHANGE) EX_minohp(e) myo-Inositol hexakisphosphate exchange [e] : minohp <==> (:EXCHANGE) EX_mmet(e) S-Methyl-L-methionine exchange [e] : mmet <==> (:EXCHANGE) EX_mn2(e) Mn2+ exchange [e] : mn2 <==> (:EXCHANGE) EX_mnl(e) D-Mannitol exchange [e] : mnl <==> (:EXCHANGE) EX_mobd(e) Molybdate exchange [e] : mobd <==> (:EXCHANGE) EX_mso3(e) methanesulfonate exchange [e] : mso3 <==> (:EXCHANGE) EX_n2o(e) Nitrous oxide exchange [e] : n2o <==> (:EXCHANGE) EX_na1(e) Sodium exchange [e] : na1 <==> (:EXCHANGE) EX_nac(e) Nicotinate exchange [e] : nac <==> (:EXCHANGE) EX_nh4(e) Ammonia exchange [e] : nh4 <==> (:EXCHANGE) EX_ni2(e) Ni2+ exchange [e] : ni2 <==> (:EXCHANGE) EX_nmn(e) NMN exchange [e] : nmn <==> (:EXCHANGE) EX_no(e) Nitric oxide exchange [e] : no <==> (:EXCHANGE) EX_no2(e) Nitrite exchange [e] : no2 <==> (:EXCHANGE) EX_no3(e) Nitrate exchange [e] : no3 <==> (:EXCHANGE) EX_o16a4colipa(e) (O16 antigen)x4 core oligosaccharide lipid A exchange [e] : o16a4colipa <==> (:EXCHANGE) EX_o2(e) O2 exchange [e] : o2 <==> (:EXCHANGE) EX_o2s(e) Superoxide anion exchange [e] : o2s <==> (:EXCHANGE) EX_ocdca(e) octadecanoate (n-C18:0) exchange [e] : ocdca <==> (:EXCHANGE) EX_ocdcea(e) octadecenoate (n-C18:1) exchange [e] : ocdcea <==> (:EXCHANGE) EX_octa(e) octanoate (n-C8:0) exchange [e] : octa <==> (:EXCHANGE) EX_orn(e) Ornithine exchange [e] : orn <==> (:EXCHANGE) EX_orot(e) Orotate exchange [e] : orot <==> (:EXCHANGE) EX_pacald(e) Phenylacetaldehyde exchange [e] : pacald <==> (:EXCHANGE) EX_peamn(e) Phenethylamine exchange [e] : peamn <==> (:EXCHANGE) EX_phe-L(e) L-Phenylalanine exchange [e] : phe-L <==> (:EXCHANGE) EX_pheme(e) Protoheme exchange [e] : pheme <==> (:EXCHANGE) EX_pi(e) Phosphate exchange [e] : pi <==> (:EXCHANGE) EX_pnto-R(e) (R)-Pantothenate exchange [e] : pnto-R <==> (:EXCHANGE) EX_ppa(e) Propionate exchange [e] : ppa <==> (:EXCHANGE) EX_ppal(e) Propanal exchange [e] : ppal <==> (:EXCHANGE) EX_pppn(e) Phenylpropanoate exchange [e] : pppn <==> (:EXCHANGE) EX_ppt(e) Phosphonate exchange [e] : ppt <==> (:EXCHANGE) EX_pro-L(e) L-Proline exchange [e] : pro-L <==> (:EXCHANGE) EX_progly(e) L-Prolinylglycine exchange [e] : progly <==> (:EXCHANGE) EX_pser-L(e) O-Phospho-L-serine exchange [e] : pser-L <==> (:EXCHANGE) EX_ptrc(e) Putrescine exchange [e] : ptrc <==> (:EXCHANGE) EX_pyr(e) Pyruvate exchange [e] : pyr <==> (:EXCHANGE) EX_r5p(e) alpha-D-Ribose 5-phosphate exchange [e] : r5p <==> (:EXCHANGE) EX_rib-D(e) D-Ribose exchange [e] : rib-D <==> (:EXCHANGE) EX_rmn(e) L-Rhamnose exchange [e] : rmn <==> (:EXCHANGE) EX_sbt-D(e) D-Sorbitol exchange [e] : sbt-D <==> (:EXCHANGE) EX_ser-D(e) D-Serine exchange [e] : ser-D <==> (:EXCHANGE) EX_ser-L(e) L-Serine exchange [e] : ser-L <==> (:EXCHANGE) EX_skm(e) Shikimate exchange [e] : skm <==> (:EXCHANGE) EX_so2(e) sulfur dioxide exchange [e] : so2 <==> (:EXCHANGE) EX_so3(e) Sulfite exchange [e] : so3 <==> (:EXCHANGE) EX_so4(e) Sulfate exchange [e] : so4 <==> (:EXCHANGE) EX_spmd(e) Spermidine exchange [e] : spmd <==> (:EXCHANGE) EX_succ(e) Succinate exchange [e] : succ <==> (:EXCHANGE) EX_sucr(e) Sucrose exchange [e] : sucr <==> (:EXCHANGE) EX_sulfac(e) sulfoacetate exchange [e] : sulfac <==> (:EXCHANGE) EX_tartr-L(e) L-tartrate exchange [e] : tartr-L <==> (:EXCHANGE) EX_taur(e) Taurine exchange [e] : taur <==> (:EXCHANGE) EX_tcynt(e) Thiocyanate exchange [e] : tcynt <==> (:EXCHANGE) EX_thm(e) Thiamin exchange [e] : thm <==> (:EXCHANGE) EX_thr-L(e) L-Threonine exchange [e] : thr-L <==> (:EXCHANGE) EX_thrp(e) L-Threonine O-3-phosphate exchange [e] : thrp <==> (:EXCHANGE) EX_thym(e) Thymine exchange [e] : thym <==> (:EXCHANGE) EX_thymd(e) Thymidine exchange [e] : thymd <==> (:EXCHANGE) EX_tma(e) Trimethylamine exchange [e] : tma <==> (:EXCHANGE) EX_tmao(e) Trimethylamine N-oxide exchange [e] : tmao <==> (:EXCHANGE) EX_tre(e) Trehalose exchange [e] : tre <==> (:EXCHANGE) EX_trp-L(e) L-Tryptophan exchange [e] : trp-L <==> (:EXCHANGE) EX_tsul(e) Thiosulfate exchange [e] : tsul <==> (:EXCHANGE) EX_ttdca(e) tetradecanoate (n-C14:0) exchange [e] : ttdca <==> (:EXCHANGE) EX_ttdcea(e) tetradecenoate (n-C14:1) exchange [e] : ttdcea <==> (:EXCHANGE) EX_tym(e) Tyramine exchange [e] : tym <==> (:EXCHANGE) EX_tyr-L(e) L-Tyrosine exchange [e] : tyr-L <==> (:EXCHANGE) EX_tyrp(e) Phosphotyrosine exchange [e] : tyrp <==> (:EXCHANGE) EX_uacgam(e) UDP-N-acetyl-D-glucosamine exchange [e] : uacgam <==> (:EXCHANGE) EX_udpacgal(e) UDP-N-acetyl-D-galactosamine exchange [e] : udpacgal <==> (:EXCHANGE) EX_udpg(e) UDPglucose exchange [e] : udpg <==> (:EXCHANGE) EX_udpgal(e) UDPgalactose exchange [e] : udpgal <==> (:EXCHANGE) EX_udpglcur(e) UDP-D-glucuronate exchange [e] : udpglcur <==> (:EXCHANGE) EX_ump(e) UMP exchange [e] : ump <==> (:EXCHANGE) EX_ura(e) Uracil exchange [e] : ura <==> (:EXCHANGE) EX_urea(e) Urea exchange [e] : urea <==> (:EXCHANGE) EX_uri(e) Uridine exchange [e] : uri <==> (:EXCHANGE) EX_val-L(e) L-Valine exchange [e] : val-L <==> (:EXCHANGE) EX_xan(e) Xanthine exchange [e] : xan <==> (:EXCHANGE) EX_xmp(e) Xanthosine 5'-phosphate exchange [e] : xmp <==> (:EXCHANGE) EX_xtsn(e) Xanthosine exchange [e] : xtsn <==> (:EXCHANGE) EX_xyl-D(e) D-Xylose exchange [e] : xyl-D <==> (:EXCHANGE) EX_xylu-L(e) L-Xylulose exchange [e] : xylu-L <==> (:EXCHANGE) EX_zn2(e) Zinc exchange [e] : zn2 <==> (:EXCHANGE) F6PA (RXN0-313) fructose 6-phosphate aldolase [c] : f6p <==> dha + g3p Glycolysis/Gluconeogenesis ( b0825 or b3946 ) F6PP (SUGAR-PHOSPHATASE-RXN) D-fructose 6-phosphate phosphatase [c] : f6p + h2o --> fru + pi Update b0822 (:EXPANDED-RXN-MATCH) F6Pt6_2pp Fructose-6-phosphate transport via phosphate antiport (periplasm) f6p[p] + (2) pi[c] --> f6p[c] + (2) pi[p] "Transport, Inner Membrane" b3666 F6Ptex fructose 6-phosphate transport via diffusion (extracellular to periplasm) f6p[e] <==> f6p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FA100ACPHi fatty-acyl-ACP hydrolase [c] : dcaACP + h2o --> ACP + dca + h Update 3.1.2.14 b0404 FA120ACPHi fatty-acyl-ACP hydrolase [c] : ddcaACP + h2o --> ACP + ddca + h Update 3.1.2.14 b0404 FA140ACPHi fatty-acyl-ACP hydrolase [c] : h2o + myrsACP --> ACP + h + ttdca Update 3.1.2.14 b0404 (:UNMAPPED-CPDS) FA141ACPHi fatty-acyl-ACP hydrolase [c] : h2o + tdeACP --> ACP + h + ttdcea Update 3.1.2.14 b0404 (:UNMAPPED-CPDS) FA160ACPHi fatty-acyl-ACP hydrolase [c] : h2o + palmACP --> ACP + h + hdca Update 3.1.2.14 b0404 FA161ACPHi fatty-acyl-ACP hydrolase [c] : h2o + hdeACP --> ACP + h + hdcea Update 3.1.2.14 b0404 FA80ACPHi fatty-acyl-ACP hydrolase [c] : h2o + ocACP --> ACP + h + octa Update 3.1.2.14 b0404 FACOAE100 (3.1.2.18-RXN 3.1.2.19-RXN ACYL-COA-HYDROLASE-RXN) fatty-acid-CoA thioesterase (decanoate) [c] : dcacoa + h2o --> coa + dca + h Update b0452 (:METACYC :EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) FACOAE120 fatty-acid-CoA thioesterase (dodecanoate) [c] : ddcacoa + h2o --> coa + ddca + h Update b0452 FACOAE140 fatty-acid-CoA thioesterase (tetradecanoate) [c] : h2o + tdcoa --> coa + h + ttdca Update b0452 (:UNMAPPED-CPDS) FACOAE141 fatty-acid-CoA thioesterase (tetradecenoate) [c] : h2o + tdecoa --> coa + h + ttdcea Update b0452 (:UNMAPPED-CPDS) FACOAE160 (PALMITOYL-COA-HYDROLASE-RXN) fatty-acid-CoA thioesterase (hexadecanoate) [c] : h2o + pmtcoa --> coa + h + hdca Update b0452 (:METACYC (RIGHT REMOVE PROTON)) FACOAE161 (PALMITOYL-COA-HYDROLASE-RXN) fatty-acid-CoA thioesterase (hexadecenoate) [c] : h2o + hdcoa --> coa + h + hdcea Update b0452 (:METACYC (RIGHT REMOVE PROTON)) FACOAE180 fatty-acid-CoA thioesterase (octadecanoate) [c] : h2o + stcoa --> coa + h + ocdca Update b0452 FACOAE181 fatty-acid-CoA thioesterase (octadecenoate) [c] : h2o + odecoa --> coa + h + ocdcea Update b0452 FACOAE60 fatty-acid-CoA thioesterase (hexanoate) [c] : h2o + hxcoa --> coa + h + hxa Update b0452 FACOAE80 fatty-acid-CoA thioesterase (octanoate) [c] : h2o + occoa --> coa + h + octa Update b0452 FACOAL100t2pp fatty-acid-CoA ligase (decanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + dca[p] + h[p] --> amp[c] + dcacoa[c] + h[c] + ppi[c] Update 6.2.1.3 ( b1805 or b1701 ) FACOAL120t2pp fatty-acid-CoA ligase (dodecanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + ddca[p] + h[p] --> amp[c] + ddcacoa[c] + h[c] + ppi[c] Update 6.2.1.3 ( b1701 or b1805 ) FACOAL140t2pp fatty-acid-CoA ligase (tetradecanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + ttdca[p] --> amp[c] + h[c] + ppi[c] + tdcoa[c] Update 6.2.1.3 ( b1701 or b1805 ) (:UNMAPPED-CPDS) FACOAL141t2pp fatty-acid-CoA ligase (tetradecenoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + ttdcea[p] --> amp[c] + h[c] + ppi[c] + tdecoa[c] Update 6.2.1.3 ( b1701 or b1805 ) (:UNMAPPED-CPDS) FACOAL160t2pp fatty-acid-CoA ligase (hexadecanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + hdca[p] --> amp[c] + h[c] + pmtcoa[c] + ppi[c] Update 6.2.1.3 ( b1701 or b1805 ) FACOAL161t2pp fatty-acid-CoA ligase (hexadecenoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + hdcea[p] --> amp[c] + h[c] + hdcoa[c] + ppi[c] Update 6.2.1.3 ( b1805 or b1701 ) FACOAL180t2pp fatty-acid-CoA ligase (octadecanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + ocdca[p] --> amp[c] + h[c] + ppi[c] + stcoa[c] Update 6.2.1.3 ( b1701 or b1805 ) FACOAL181t2pp fatty-acid-CoA ligase (octadecenoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + ocdcea[p] --> amp[c] + h[c] + odecoa[c] + ppi[c] Update 6.2.1.3 ( b1805 or b1701 ) FACOAL60t2pp fatty-acid-CoA ligase (hexanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + hxa[p] --> amp[c] + h[c] + hxcoa[c] + ppi[c] Update 6.2.1.3 ( b1805 or b1701 ) FACOAL80t2pp fatty-acid-CoA ligase (octanoate transport via vectoral Co-A coupling) atp[c] + coa[c] + h[p] + octa[p] --> amp[c] + h[c] + occoa[c] + ppi[c] Update 6.2.1.3 ( b1805 or b1701 ) FADRx FAD reductase [c] : fad + h + nadh --> fadh2 + nad Update b3844 FADRx2 FAD reductase [c] : fad + h + nadph --> fadh2 + nadp Update ( b2763 and b2764 ) FALDH2 (RXN-2962) formaldehyde dehydrogenase [c] : hmgth + nad <==> Sfglutth + h + nadh Update b0356 (:EXPANDED-RXN-MATCH) FALDtex formaldehyde transport via diffusion (extracellular to periplasm) fald[e] <==> fald[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FALDtpp formaldehyde transport via diffusion (periplasm) fald[p] <==> fald[c] "Tranpsort, Inner Membrane" (:DIFFUSION) FALGTHLs (RXN-2961) formaldehyde glutathione ligase (spontaneous) [c] : fald + gthrd <==> hmgth Update FBA (F16ALDOLASE-RXN) fructose-bisphosphate aldolase [c] : fdp <==> dhap + g3p Glycolysis/Gluconeogenesis 4.1.2.13 ( b2925 or b1773 or b2097 ) FBP (F16BDEPHOS-RXN) fructose-bisphosphatase [c] : fdp + h2o --> f6p + pi Glycolysis/Gluconeogenesis 3.1.3.11 ( b4232 or b3925 ) FCI (FUCISOM-RXN) L-fucose isomerase [c] : fuc-L <==> fcl-L Alternate Carbon Metabolism 5.3.1.25 b2802 FCLK (FUCULOKIN-RXN) L-fuculokinase [c] : atp + fcl-L --> adp + fc1p + h Alternate Carbon Metabolism 2.7.1.51 b2803 ((RIGHT REMOVE PROTON)) FCLPA (FUCPALDOL-RXN) L-fuculose 1-phosphate aldolase [c] : fc1p <==> dhap + lald-L Alternate Carbon Metabolism 4.1.2.17 ( b2738 or b2800 ) FCLT (PROTOHEMEFERROCHELAT-RXN) Ferrochelatase [c] : fe2 + ppp9 --> (2) h + pheme Cofactor and Prosthetic Group Biosynthesis 4.99.1.1 b0475 FDH4pp formate dehydrogenase (quinone-8) (periplasm) for[p] + (2) h[c] + q8[c] --> co2[c] + h[p] + q8h2[c] Oxidative Phosphorylation 1.2.2.1 ( ( b3892 and b3893 and b3894 ) or ( b1474 and b1475 and b1476 ) ) FDH5pp Formate Dehydrogenase (menaquinone-8) (periplasm) for[p] + (2) h[c] + mqn8[c] --> co2[c] + h[p] + mql8[c] Oxidative Phosphorylation 1.2.2.1 ( ( b1474 and b1475 and b1476 ) or ( b3892 and b3893 and b3894 ) ) FDMO FMNH2-dependent monooxygenase [c] : fmnh2 + isetac + o2 --> fmn + gcald + h + h2o + so3 Update b0935 FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) [c] : fmnh2 + mso3 + o2 --> fald + fmn + h + h2o + so3 Update b0935 FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) [c] : ethso3 + fmnh2 + o2 --> acald + fmn + h + h2o + so3 Update b0935 FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) [c] : butso3 + fmnh2 + o2 --> btal + fmn + h + h2o + so3 Update b0935 FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) [c] : fmnh2 + o2 + sulfac --> fmn + glx + h + h2o + so3 Update b0935 FE2abcpp iron (II) transport via ABC system (periplasm) atp[c] + fe2[p] + h2o[c] --> adp[c] + fe2[c] + h[c] + pi[c] "Transport, Inner Membrane" b3409 FE2t2pp (RXN0-2421) iron (II) transport in via proton symport (periplasm) fe2[p] + h[p] --> fe2[c] + h[c] "Transport, Inner Membrane" b2392 FE2tex iron (II) transport via diffusion (extracellular to periplasm) fe2[e] <==> fe2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FE2tpp (TRANS-RXN-8) iron (+2) transport in/out via permease (no H+) fe2[p] <==> fe2[c] "Transport, Inner Membrane" b3040 FE3DCITabcpp iron transport from ferric-dicitrate via ABC system (periplasm) atp[c] + fe3dcit[p] + h2o[c] --> adp[c] + (2) cit[c] + fe3[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b4290 and b4289 and b4288 and b4287 ) FE3DCITtonex (RXN0-1684) ferric-dicitrate transport via ton system (extracellular) fe3dcit[e] + h[p] --> fe3dcit[p] + h[c] "Transport, Outer Membrane" ( b4291 and ( b1252 and b3005 and b3006 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) FE3DHBZR "release of Fe(III) from ferric 2,3-dihydroxybenzoylserine" [c] : fe3dhbzs --> 23dhbzs + fe3 Update FE3DHBZSabcpp "ferric 2,3-dihydroxybenzoylserine transport via ABC system (periplasm)" atp[c] + fe3dhbzs[p] + h2o[c] --> adp[c] + fe3dhbzs[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0592 and b0588 and b0590 and b0589 ) FE3DHBZStonex (RXN0-1721) "ferric 2,3-dihydroxybenzoylserine transport via ton system (extracellular)" fe3dhbzs[e] + h[p] --> fe3dhbzs[p] + h[c] "Transport, Outer Membrane" ( ( b0805 and ( b1252 and b3005 and b3006 ) ) or ( b2155 and ( b1252 and b3005 and b3006 ) ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) FE3HOXR1 Fe(III)hydroxamate reductase [c] : fadh2 + (2) fe3hox --> fad + (2) fe2 + (2) fe3hox-un + (2) h Update (:UNMAPPED-CPDS) FE3HOXR2 Fe(III)hydroxamate reductase [c] : (2) fe3hox + fmnh2 --> (2) fe2 + (2) fe3hox-un + fmn + (2) h Update (:UNMAPPED-CPDS) FE3HOXR3 Fe(III)hydroxamate reductase [c] : (2) fe3hox + rbflvrd --> (2) fe2 + (2) fe3hox-un + (2) h + ribflv Update (:UNMAPPED-CPDS) FE3HOXUtex Fe(III)hydroxamate unloaded secretion fe3hox-un[c] + h[p] --> fe3hox-un[p] + h[c] Update (:UNMAPPED-CPDS) FE3HOXUtpp Fe(III)hydroxamate unloaded secretion (extracellular) fe3hox-un[p] + h[p] --> fe3hox-un[e] + h[c] Update (:UNMAPPED-CPDS) FE3HOXabcpp (ABC-11-RXN) ferric-dicitrate transport via ABC system (periplasm) atp[c] + fe3hox[p] + h2o[c] --> adp[c] + fe3hox[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0153 and b0151 and b0152 ) ((RIGHT REMOVE PROTON)) FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) [e] : fe3 + fe3hox-un --> fe3hox Update (:UNMAPPED-CPDS) FE3HOXtonex (RXN0-1701) Fe(III)hydroxamine transport via ton system (extracellular) fe3hox[e] + h[p] --> fe3hox[p] + h[c] "Transport, Outer Membrane" ( b0150 and ( b1252 and b3005 and b3006 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) FE3Ri Fe(III) reduction [c] : fadh2 + (2) fe3 --> fad + (2) fe2 + (2) h Update b3844 FE3abcpp iron (III) transport via ABC system (periplasm to cytoplasm) atp[c] + fe3[p] + h2o[c] --> adp[c] + fe3[c] + h[c] + pi[c] "Transport, Inner Membrane" FE3tex iron (III) transport via diffusion (extracellular to periplasm) fe3[e] <==> fe3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FECRMR1 Ferrichrome reductase [c] : fadh2 + (2) fecrm --> fad + (2) fe2 + (2) fecrm-un + (2) h Update (:UNMAPPED-CPDS) FECRMR2 Ferrichrome reductase [c] : (2) fecrm + fmnh2 --> (2) fe2 + (2) fecrm-un + fmn + (2) h Update (:UNMAPPED-CPDS) FECRMR3 Ferrichrome reductase [c] : (2) fecrm + rbflvrd --> (2) fe2 + (2) fecrm-un + (2) h + ribflv Update (:UNMAPPED-CPDS) FECRMUtex ferrichrome (minus Fe) secretion (to extracellular) fecrm-un[p] + h[p] --> fecrm-un[e] + h[c] Update (:UNMAPPED-CPDS) FECRMUtpp ferrichrome (minus Fe) secretion (to periplasm) fecrm-un[c] + h[p] --> fecrm-un[p] + h[c] Update (:UNMAPPED-CPDS) FECRMabcpp ferrichrome transport via ABC system (periplasm) atp[c] + fecrm[p] + h2o[c] --> adp[c] + fecrm[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0153 and b0151 and b0152 ) (:UNMAPPED-CPDS) FECRMexs ferrichrome Fe(III)-loading reaction (spontaneous) [e] : fe3 + fecrm-un --> fecrm Update (:UNMAPPED-CPDS) FECRMtonex ferrichrome transport via ton system (extracellular) fecrm[e] + h[p] --> fecrm[p] + h[c] "Transport, Outer Membrane" ( b0150 and ( b1252 and b3005 and b3006 ) ) (:UNMAPPED-CPDS) FEENTERR1 Fe-enterobactin reduction (Fe(III)-unloading) [c] : fadh2 + (2) feenter --> (2) enter + fad + (2) fe2 + (2) h Update FEENTERR2 Fe-enterobactin reduction (Fe(III)-unloading) [c] : (2) feenter + fmnh2 --> (2) enter + (2) fe2 + fmn + (2) h Update FEENTERR3 Fe-enterobactin reduction (Fe(III)-unloading) [c] : (2) feenter + rbflvrd --> (2) enter + (2) fe2 + (2) h + ribflv Update FEENTERabcpp (ABC-10-RXN) Fe-enterobactin transport via ABC system (periplasm) atp[c] + feenter[p] + h2o[c] --> adp[c] + feenter[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0592 and b0588 and b0590 and b0589 ) ((RIGHT REMOVE PROTON)) FEENTERexs enterobactin Fe(III) binding (spontaneous) [e] : enter + fe3 --> feenter Update FEENTERtex enterochelin transport (secretion periplasm) enter[p] + h[p] --> enter[e] + h[c] Update FEENTERtonex (RXN0-1682) Fe-enterobactin transport via ton system (extracellular) feenter[e] + h[p] --> feenter[p] + h[c] "Transport, Outer Membrane" ( b0584 and ( b1252 and b3005 and b3006 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) FEENTERtpp enterochelin transport (secretion) enter[c] + h[p] --> enter[p] + h[c] Update b0591 FEOXAMR1 ferroxamine reductase [c] : fadh2 + (2) feoxam --> fad + (2) fe2 + (2) feoxam-un + (2) h Update (:UNMAPPED-CPDS) FEOXAMR2 ferroxamine reductase [c] : (2) feoxam + fmnh2 --> (2) fe2 + (2) feoxam-un + fmn + (2) h Update (:UNMAPPED-CPDS) FEOXAMR3 ferroxamine reductase [c] : (2) feoxam + rbflvrd --> (2) fe2 + (2) feoxam-un + (2) h + ribflv Update (:UNMAPPED-CPDS) FEOXAMUtex ferroxamine (minus Fe3) secretion (to extracellular) feoxam-un[p] + h[p] --> feoxam-un[e] + h[c] Update (:UNMAPPED-CPDS) FEOXAMUtpp ferroxamine (minus Fe3) secretion (to periplasm) feoxam-un[c] + h[p] --> feoxam-un[p] + h[c] Update (:UNMAPPED-CPDS) FEOXAMabcpp ferroxamine transport via ABC system (periplasm) atp[c] + feoxam[p] + h2o[c] --> adp[c] + feoxam[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0153 and b0151 and b0152 ) (:UNMAPPED-CPDS) FEOXAMexs ferroxamine Fe3-loading reaction (spontaneous) [e] : fe3 + feoxam-un --> feoxam Update (:UNMAPPED-CPDS) FEOXAMtonex ferroxamine transport via ton system (extracellular) feoxam[e] + h[p] --> feoxam[p] + h[c] "Transport, Outer Membrane" ( b0150 and ( b1252 and b3005 and b3006 ) ) (:UNMAPPED-CPDS) FEROpp ferroxidase [p] : (4) fe2 + (4) h + o2 --> (4) fe3 + (2) h2o Update 1.16.3.1 b0123 FFSD (3.2.1.26-RXN) beta-fructofuranosidase [c] : h2o + suc6p --> fru + g6p Alternate Carbon Metabolism 3.2.1.26 (:METACYC) FHL (FHLMULTI-RXN) Formate-hydrogen lyase [c] : for + h --> co2 + h2 Pyruvate Metabolism ( b4079 and ( b2481 and b2482 and b2483 and b2484 and b2485 and b2486 and b2487 and b2488 and b2489 and b2490 ) ) ((LEFT REMOVE PROTON)) FHL_1p3 (FHLMULTI-RXN) Formate-hydrogen lyase (proton translocating) for[c] + (2.3) h[c] --> co2[c] + (1.3) h[p] + h2[c] Update ( b4079 and ( b2719 and b2720 and b2721 and b2722 and b2723 and b2724 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) FLDR (FLAVONADPREDUCT-RXN) flavodoxin reductase (NADPH) [c] : fldox + h + nadph --> fldrd + nadp Update 1.18.1.2 b3924 FLVR (|NADPH-DEHYDROGENASE-(FLAVIN)-RXN|) flavin reductase [c] : h + nadph + ribflv --> nadp + rbflvrd Update 1.5.1.30 ( b3844 or ( b2763 and b2764 ) ) (:METACYC (LEFT REMOVE PROTON)) FLVR(NAD) flavin reductase (NAD) [c] : h + nadh + ribflv --> nad + rbflvrd Update 1.5.1.30 b3844 FMETTRS Methionyl-tRNA formyltransferase [c] : 10fthf + mettrna --> fmettrna + h + thf Update 2.1.2.9 b3288 FMNAT (FADSYN-RXN) FMN adenylyltransferase [c] : atp + fmn + h --> fad + ppi Cofactor and Prosthetic Group Biosynthesis 2.7.7.2 b0025 ((LEFT REMOVE PROTON)) FMNRx (FMNREDUCT-RXN) FMN reductase [c] : fmn + h + nadh --> fmnh2 + nad Update ( b3844 or b0937 ) (:EXPANDED-RXN-MATCH) FMNRx2 (FMNREDUCT-RXN) FMN reductase [c] : fmn + h + nadph --> fmnh2 + nadp Update ( b0937 or ( b2763 and b2764 ) or b3844 ) (:EXPANDED-RXN-MATCH) FORt2pp (TRANS-RXN-1) "formate transport via proton symport (uptake only, periplasm)" for[p] + h[p] --> for[c] + h[c] "Transport, Inner Membrane" ( b0904 or b2492 ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) FORtex formate transport via diffusion (extracellular to periplasm) for[e] <==> for[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FORtppi (TRANS-RXN-1) formate transport via diffusion (cytoplasm to periplasm) for[c] --> for[p] "Transport, Inner Membrane" ( b0904 or b2492 ) FRD2 fumarate reductase [c] : fum + mql8 --> mqn8 + succ Citric Acid Cycle 1.3.99.1 ( b4151 and b4152 and b4153 and b4154 ) FRD3 fumarate reductase [c] : 2dmmql8 + fum --> 2dmmq8 + succ Citric Acid Cycle 1.3.99.1 ( b4151 and b4152 and b4153 and b4154 ) FRUK (1PFRUCTPHOSN-RXN) fructose-1-phosphate kinase [c] : atp + f1p --> adp + fdp + h Alternate Carbon Metabolism 2.7.1.56 b2168 ((RIGHT REMOVE PROTON)) FRULYSDG (RXN0-963) Fructoselysine phosphate deglycase [c] : frulysp + h2o <==> g6p + lys-L Update b3371 FRULYSK (RXN0-962) Fructoselysine Kinase [c] : atp + frulys --> adp + frulysp + h Update b3374 ((RIGHT REMOVE PROTON)) FRULYSt2rpp Fructoselysine cationic transporter frulys[p] + h[p] <==> frulys[c] + h[c] Update b3370 FRULYStex fructoselysine transporter via diffusion (extracellular) frulys[e] <==> frulys[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FRUURt2rpp (TRANS-RXN-81) "D-fructuronate transport via proton symport, reversible (periplasm)" fruur[p] + h[p] <==> fruur[c] + h[c] Update b4321 FRUURtex D-fructuronate transport via diffusion (extracellular) fruur[e] <==> fruur[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) FRUpts2pp (TRANS-RXN-158A) Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm) fru[p] + pep[c] --> f6p[c] + pyr[c] "Transport, Inner Membrane" ( b1817 and b1818 and b1819 and b2415 and b2416 ) FRUptspp (TRANS-RXN-158) D-fructose transport via PEP:Pyr PTS (periplasm) fru[p] + pep[c] --> f1p[c] + pyr[c] "Transport, Inner Membrane" ( b2167 and b2169 and b2415 and b2416 ) FRUtex (RXN0-1683) D-fructose transport via diffusion (extracellular to periplasm) fru[e] <==> fru[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) FTHFD (FORMYLTHFDEFORMYL-RXN) formyltetrahydrofolate deformylase [c] : 10fthf + h2o --> for + h + thf Folate Metabolism 3.5.1.10 b1232 ((RIGHT REMOVE PROTON)) FUCtex (RXN0-1683) L-fucose transport via diffusion (extracellular to periplasm) fuc-L[e] <==> fuc-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) FUCtpp (TRANS-RXN-20) L-fucose transport via proton symport (periplasm) fuc-L[p] + h[p] <==> fuc-L[c] + h[c] "Transport, Inner Membrane" b2801 FUM (FUMHYDR-RXN) fumarase [c] : fum + h2o <==> mal-L Citric Acid Cycle 4.2.1.2 ( b1612 or b4122 or b1611 ) FUMt2_2pp (TRANS-RXN-202) Fumarate transport via proton symport (2 H) (periplasm) fum[p] + (2) h[p] --> fum[c] + (2) h[c] "Transport, Inner Membrane" b3528 FUMt2_3pp (TRANS-RXN-202) Fumarate transport via proton symport (3 H) (periplasm) fum[p] + (3) h[p] --> fum[c] + (3) h[c] "Transport, Inner Membrane" ( b4138 or b4123 or b0621 ) FUMtex Fumarate transport via diffusion (extracellular to periplasm) fum[e] <==> fum[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) G1PACT (2.3.1.157-RXN) glucosamine-1-phosphate N-acetyltransferase [c] : accoa + gam1p --> acgam1p + coa + h Cell Envelope Biosynthesis 2.3.1.157 b3730 ((RIGHT REMOVE PROTON)) G1PPpp Glucose-1-phosphatase [p] : g1p + h2o --> glc-D + pi Update 3.1.3.10 b1002 G1PTT (DTDPGLUCOSEPP-RXN) glucose-1-phosphate thymidylyltransferase [c] : dttp + g1p + h --> dtdpglu + ppi Cell Envelope Biosynthesis 2.7.7.24 ( b3789 or b2039 ) ((LEFT REMOVE PROTON)) G1Ptex D-glucose 1-phosphate transport via diffusion g1p[e] <==> g1p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) G1SAT (GSAAMINOTRANS-RXN) glutamate-1-semialdehyde aminotransferase [c] : glu1sa <==> 5aop Cofactor and Prosthetic Group Biosynthesis 5.4.3.8 b0154 G2PPpp glycerol 2-phosphate phosphatase (periplasmic) [p] : glyc2p + h2o --> glyc + pi Update b4055 G3PAT120 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C12:0) [c] : ddcaACP + glyc3p --> 1ddecg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 (:EXPANDED-RXN-MATCH) G3PAT140 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C14:0) [c] : glyc3p + myrsACP --> 1tdecg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 (:EXPANDED-RXN-MATCH) G3PAT141 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C14:1) [c] : glyc3p + tdeACP --> 1tdec7eg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 G3PAT160 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C16:0) [c] : glyc3p + palmACP --> 1hdecg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 G3PAT161 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C16:1) [c] : glyc3p + hdeACP --> 1hdec9eg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 (:EXPANDED-RXN-MATCH) G3PAT180 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C18:0) [c] : glyc3p + ocdcaACP --> 1odecg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 G3PAT181 (GLYCEROL-3-P-ACYLTRANSFER-RXN) glycerol-3-phosphate acyltransferase (C18:1) [c] : glyc3p + octeACP --> 1odec11eg3p + ACP Glycerophospholipid Metabolism 2.3.1.15 b4041 G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system (periplasm) atp[c] + g3pc[p] + h2o[c] --> adp[c] + g3pc[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3452 and b3453 and b3450 and b3451 ) G3PCtex glycero-3-phosphocholine transport via diffusion (extracellular to periplasm) g3pc[e] <==> g3pc[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) G3PD2 (GLYC3PDEHYDROGBIOSYN-RXN) glycerol-3-phosphate dehydrogenase (NADP) [c] : glyc3p + nadp <==> dhap + h + nadph Alternate Carbon Metabolism 1.1.1.94 b3608 (:EXPANDED-RXN-MATCH) G3PD5 (GLYC3PDEHYDROG-RXN) glycerol-3-phosphate dehydrogenase (ubiquinone-8) [c] : glyc3p + q8 --> dhap + q8h2 Oxidative Phosphorylation 1.1.99.5 ( ( b2241 and b2242 and b2243 ) or b3426 ) G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) [c] : glyc3p + mqn8 --> dhap + mql8 Oxidative Phosphorylation 1.1.99.5 ( b2241 and b2242 and b2243 ) G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) [c] : 2dmmq8 + glyc3p --> 2dmmql8 + dhap Oxidative Phosphorylation 1.1.99.5 ( b2241 and b2242 and b2243 ) G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) atp[c] + g3pe[p] + h2o[c] --> adp[c] + g3pe[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3452 and b3453 and b3450 and b3451 ) G3PEtex glycero-3-phosphoethanolamine transport via diffusion (extracellular to periplasm) g3pe[e] <==> g3pe[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm) atp[c] + g3pg[p] + h2o[c] --> adp[c] + g3pg[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3452 and b3453 and b3450 and b3451 ) G3PGtex glycerophoglycerol transport via diffusion (extracellular to periplasm) g3pg[e] <==> g3pg[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) atp[c] + g3pi[p] + h2o[c] --> adp[c] + g3pi[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3452 and b3453 and b3450 and b3451 ) G3PItex glycero-3-phospho-1-inositol transport via diffusion (extracellular to periplasm) g3pi[e] <==> g3pi[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system (periplasm) atp[c] + g3ps[p] + h2o[c] --> adp[c] + g3ps[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3452 and b3453 and b3450 and b3451 ) (:UNMAPPED-CPDS) G3PStex glycerophosphserine transport via diffusion (extracellular to periplasm) g3ps[e] <==> g3ps[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) G3PT (GLYCEROL-1-PHOSPHATASE-RXN) glycerol-3-phosphatase [c] : glyc3p + h2o --> glyc + pi Update b0822 (:METACYC) G5SADr (SPONTPRO-RXN) "L-glutamate 5-semialdehyde dehydratase, reversible" [c] : glu5sa <==> 1pyr5c + h + h2o Arginine and Proline Metabolism ((RIGHT REMOVE PROTON)) G5SD (GLUTSEMIALDEHYDROG-RXN) glutamate-5-semialdehyde dehydrogenase [c] : glu5p + h + nadph --> glu5sa + nadp + pi Arginine and Proline Metabolism 1.2.1.41 b0243 G6PDA (GLUCOSAMINE-6-P-DEAMIN-RXN) glucosamine-6-phosphate deaminase [c] : gam6p + h2o --> f6p + nh4 Alternate Carbon Metabolism 3.5.99.6 b0678 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) G6PDH2r (GLU6PDEHYDROG-RXN) glucose 6-phosphate dehydrogenase [c] : g6p + nadp <==> 6pgl + h + nadph Pentose Phosphate Pathway 1.1.1.49 b1852 G6PP (SUGAR-PHOSPHATASE-RXN) glucose-6-phosphate phosphatase [c] : g6p + h2o --> glc-D + pi Update 3.1.3.9 b0822 (:EXPANDED-RXN-MATCH) G6Pt6_2pp Glucose-6-phosphate transport via phosphate antiport (periplasm) g6p[p] + (2) pi[c] --> g6p[c] + (2) pi[p] "Transport, Inner Membrane" b3666 G6Ptex glucose 6-phosphate transport via diffusion (extracellular to periplasm) g6p[e] <==> g6p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GAL1PPpp D-galactose 1-phosphatase [p] : gal1p + h2o --> gal + pi Update 3.1.3.10 b1002 GAL1Ptex D-galactose 1-phosphate transport via diffusion (extracellular to periplasm) gal1p[e] <==> gal1p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GALBDtex (RXN0-1683) beta D-galactose transport via diffusion (extracellular to periplasm) gal-bD[e] <==> gal-bD[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) GALCTD (GALACTARDEHYDRA-RXN) galactarate dehydratase [c] : galct-D --> 5dh4dglc + h2o Alternate Carbon Metabolism 4.2.1.42 b3128 GALCTLO L-galactonate oxidoreductase [c] : galctn-L + nad --> h + nadh + tagur Update b4358 (:UNMAPPED-CPDS) GALCTND (GALACTONDEHYDRAT-RXN) galactonate dehydratase [c] : galctn-D --> 2dh3dgal + h2o Alternate Carbon Metabolism 4.2.1.6 b4478 GALCTNLt2pp L-galactonate transport via proton symport (periplasm) galctn-L[p] + h[p] --> galctn-L[c] + h[c] "Transport, Inner Membrane" b4356 (:UNMAPPED-CPDS) GALCTNLtex L-galactonate transport via diffusion (extracellular to periplasm) galctn-L[e] <==> galctn-L[p] "Transport, Outer Membrane Porin" ( b1377 or b0929 or b2215 or b0241 ) (:UNMAPPED-CPDS) GALCTNt2pp (TRANS-RXN-16) D-galactonate transport via proton symport (periplasm) galctn-D[p] + h[p] --> galctn-D[c] + h[c] "Transport, Inner Membrane" b3691 GALCTNtex D-galactonate transport via diffusion (extracellular to periplasm) galctn-D[e] <==> galctn-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GALCTt2rpp "D-galactarte transport via proton symport, reversible (periplasm)" galct-D[p] + h[p] <==> galct-D[c] + h[c] "Transport, Inner Membrane" ( b3127 or b2789 ) GALCTtex D-galactarte transport via diffusion (extracellular to periplasm) galct-D[e] <==> galct-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GALKr (GALACTOKIN-RXN) galactokinase [c] : atp + gal <==> adp + gal1p + h Alternate Carbon Metabolism 2.7.1.6 ( b2045 or b0757 ) ((RIGHT REMOVE PROTON)) GALM2pp aldose-1-epimerase [p] : gal-bD --> gal Update 5.1.3.3 b0756 GALS3 (ALPHAGALACTOSID-RXN) a-galactosidase (melibiose) [c] : h2o + melib --> gal + glc-D Alternate Carbon Metabolism 3.2.1.22 b4119 GALT1 galactosyltransferase I (LPS core synthesis) [c] : gicolipa + udpg --> gagicolipa + h + udp Lipopolysaccharide Biosynthesis / Recycling b3628 (:UNMAPPED-CPDS) GALTptspp (TRANS-RXN-161) Galactitol transport via PEP:Pyr PTS (periplasm) galt[p] + pep[c] --> galt1p[c] + pyr[c] "Transport, Inner Membrane" ( b2094 and b2093 and b2092 and b2415 and b2416 ) GALTtex (RXN0-1683) Galactitol transport via diffusion (extracellular to periplasm) galt[e] <==> galt[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) GALURt2rpp (TRANS-RXN-123) "D-galacturonate transport via proton symport, reversible (periplasm)" galur[p] + h[p] <==> galur[c] + h[c] "Transport, Inner Membrane" b3093 GALURtex D-galacturonate transport via diffusion (extracellular to periplasm) galur[e] <==> galur[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GALUi (GLUC1PURIDYLTRANS-RXN) UTP-glucose-1-phosphate uridylyltransferase (irreversible) [c] : g1p + h + utp --> ppi + udpg Cell Envelope Biosynthesis 2.7.7.9 b1236 ((LEFT REMOVE PROTON)) GALabcpp (ABC-18-RXN) D-galactose transport via ABC system (periplasm) atp[c] + gal[p] + h2o[c] --> adp[c] + gal[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b2149 and b2150 and b2148 ) ((RIGHT REMOVE PROTON)) GALt2pp (TRANS-RXN-21) D-galactose transport in via proton symport (periplasm) gal[p] + h[p] --> gal[c] + h[c] "Transport, Inner Membrane" b2943 GALtex (RXN0-1683) D-galactose transport via diffusion (extracellular to periplasm) gal[e] <==> gal[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) GAM6Pt6_2pp D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm) gam6p[p] + (2) pi[c] --> gam6p[c] + (2) pi[p] "Transport, Inner Membrane" b3666 GAMAN6Ptex D-glucosamine 6-phosphate transport via diffusion (extracellular to periplasm) gam6p[e] <==> gam6p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GAMptspp (TRANS-RXN-167A) D-glucosamine transport via PEP:Pyr PTS (periplasm) gam[p] + pep[c] --> gam6p[c] + pyr[c] "Transport, Inner Membrane" ( b1817 and b1818 and b1819 and b2415 and b2416 ) GAMtex D-glucosamine transport via diffusion (extracellular to periplasm) gam[e] <==> gam[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GAPD (GAPOXNPHOSPHN-RXN) glyceraldehyde-3-phosphate dehydrogenase [c] : g3p + nad + pi <==> 13dpg + h + nadh Glycolysis/Gluconeogenesis 1.2.1.12 b1779 ((RIGHT REMOVE PROTON)) GARFT (GART-RXN) phosphoribosylglycinamide formyltransferase [c] : 10fthf + gar <==> fgam + h + thf Purine and Pyrimidine Biosynthesis 2.1.2.2 b2500 ((RIGHT REMOVE PROTON)) GART (GARTRANSFORMYL2-RXN) GAR transformylase-T [c] : atp + for + gar --> adp + fgam + h + pi Purine and Pyrimidine Biosynthesis b1849 ((RIGHT REMOVE PROTON)) GBBTNtex gamma-butyrobetaine transport via diffusion (extracellular to periplasm) gbbtn[e] <==> gbbtn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GCALDD (GLYCOLALD-DEHYDROG-RXN) Glycolaldehyde dehydrogenase [c] : gcald + h2o + nad --> glyclt + (2) h + nadh Folate Metabolism 1.2.1.21 b1415 ((RIGHT REMOVE PROTON)) GDMANE GDP-4-dehydro-6-deoxy-D-mannose epimerase [c] : gdpddman --> gdpofuc Cell Envelope Biosynthesis b2052 (:UNMAPPED-CPDS) GDPDPK (GDPPYPHOSKIN-RXN) GDP diphosphokinase [c] : atp + gdp --> amp + h + ppgpp Update ( b2784 or b3650 ) ((RIGHT REMOVE PROTON)) GDPMNH (GDPMANMANHYDRO-RXN) GDP-mannose mannosyl hydrolase [c] : gdpmann + h2o --> gdp + h + man Update b2051 ((RIGHT REMOVE PROTON)) GDPtex GDP transport via diffusion (extracellular to periplasm) gdp[e] <==> gdp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GF6PTA (L-GLN-FRUCT-6-P-AMINOTRANS-RXN) glutamine-fructose-6-phosphate transaminase [c] : f6p + gln-L --> gam6p + glu-L Cell Envelope Biosynthesis 2.6.1.16 b3729 GGGABADr (RXN0-3922) gamma-glutamyl-gamma aminobutyric acid dehydrogenase [c] : ggbutal + h2o + nadp <==> gg4abut + (2) h + nadph Update b1300 (:EXPANDED-RXN-MATCH) GGGABAH (RXN0-3942) gamma-glutamyl-gamma-aminobutyric acid hydrolase [c] : gg4abut + h2o --> 4abut + glu-L Update b1298 GGPTRCO (RXN0-3921) gamma glutamyl putrescine oxidase [c] : ggptrc + h2o + o2 --> ggbutal + h2o2 + nh4 Update b1301 GGPTRCS (RXN0-3901) gamma glutamyl putrescine synthase [c] : atp + glu-L + ptrc --> adp + ggptrc + h + pi Update b1297 ((RIGHT REMOVE PROTON)) GHMT2r (GLYOHMETRANS-RXN) "glycine hydroxymethyltransferase, reversible" [c] : ser-L + thf <==> gly + h2o + mlthf Glycine and Serine Metabolism 2.1.2.1 b2551 GK1 (GUANYL-KIN-RXN) guanylate kinase (GMP:ATP) [c] : atp + gmp <==> adp + gdp Nucleotide Salvage Pathway 2.7.4.8 b3648 GLBRAN2 (GLYCOGEN-BRANCH-RXN) "1,4-alpha-glucan branching enzyme (glycogen -> bglycogen)" [c] : glycogen --> bglycogen Update 2.4.1.18 b3432 GLCATr D-glucose O-acetyltransferase [c] : accoa + glc-D <==> acglc-D + coa Update 2.3.1.79 b0459 GLCDpp Glucose dehydrogenase (ubiquinone-8 as acceptor) (periplasm) glc-D[p] + h2o[p] + q8[c] --> glcn[p] + h[p] + q8h2[c] Oxidative Phosphorylation b0124 GLCNt2rpp "D-gluconate transport via proton symport, reversible (periplasm)" glcn[p] + h[p] <==> glcn[c] + h[c] "Transport, Inner Membrane" ( b4321 or b4476 or b3415 or b4265 ) GLCNtex D-gluconate transport via diffusion (extracellular to periplasm) glcn[e] <==> glcn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLCP glycogen phosphorylase [c] : glycogen + pi --> g1p Glycolysis/Gluconeogenesis 2.4.1.1 ( b3428 or b3417 ) GLCP2 glycogen phosphorylase [c] : bglycogen + pi --> g1p Glycolysis/Gluconeogenesis 2.4.1.1 ( b3428 or b3417 ) GLCRAL (KDGALDOL-RXN) 5-dehydro-4-deoxyglucarate aldolase [c] : 5dh4dglc --> 2h3oppan + pyr Alternate Carbon Metabolism 4.1.2.20 b3126 GLCRD (GLUCARDEHYDRA-RXN) glucarate dehydratase [c] : glcr --> 5dh4dglc + h2o Alternate Carbon Metabolism 4.2.1.40 ( b2788 or b2787 ) GLCRt2rpp "D-glucarate transport via proton symport, reversible (periplasm)" glcr[p] + h[p] <==> glcr[c] + h[c] "Transport, Inner Membrane" ( b3127 or b2789 ) GLCRtex D-glucarate transport via diffusion (extracellular to periplasm) glcr[e] <==> glcr[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLCS1 glycogen synthase (ADPGlc) [c] : adpglc --> adp + glycogen + h Glycolysis/Gluconeogenesis 2.4.1.21 b3429 GLCTR1 glucosyltransferase I (LPS core synthesis) [c] : icolipa + udpg --> gicolipa + h + udp Lipopolysaccharide Biosynthesis / Recycling b3631 (:UNMAPPED-CPDS) GLCTR2 glucosyltransferase II (LPS core synthesis) [c] : gagicolipa + udpg --> ggagicolipa + h + udp Lipopolysaccharide Biosynthesis / Recycling b3627 (:UNMAPPED-CPDS) GLCTR3 glucosyltransferase III (LPS core synthesis) [c] : ggagicolipa + udpg --> gggagicolipa + h + udp Lipopolysaccharide Biosynthesis / Recycling b3626 (:UNMAPPED-CPDS) GLCUR1Ptex D-glucuronate 1-phosphate transport via diffusion (extracellular to periplasm) glcur1p[e] <==> glcur1p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLCURt2rpp (TRANS-RXN-35) "D-glucuronate transport via proton symport, reversible (periplasm)" glcur[p] + h[p] <==> glcur[c] + h[c] "Transport, Inner Membrane" ( b3909 or b3093 ) GLCURtex D-glucuronat transport via diffusion (extracellular to periplasm) glcur[e] <==> glcur[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLCabcpp D-glucose transport via ABC system (periplasm) atp[c] + glc-D[p] + h2o[c] --> adp[c] + glc-D[c] + h[c] + pi[c] Update ( b2149 and b2150 and b2148 ) GLCptspp (TRANS-RXN-157) D-glucose transport via PEP:Pyr PTS (periplasm) glc-D[p] + pep[c] --> g6p[c] + pyr[c] "Transport, Inner Membrane" ( ( b2417 and b1621 and b2415 and b2416 ) or ( b2417 and b1101 and b2415 and b2416 ) or ( b1817 and b1818 and b1819 and b2415 and b2416 ) ) GLCt2pp D-glucose transport in via proton symport (periplasm) glc-D[p] + h[p] --> glc-D[c] + h[c] "Transport, Inner Membrane" b2943 GLCtex (RXN0-1683) glucose transport via diffusion (extracellular to periplasm) glc-D[e] <==> glc-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) GLCtexi (RXN0-1683) D-glucoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible glc-D[e] --> glc-D[p] "Transport, Outer Membrane" b4036 GLDBRAN2 (GLYCOGEN-BRANCH-RXN) glycogen debranching enzyme (bglycogen -> glycogen) [c] : bglycogen --> glycogen Update b3431 GLGC (GLUC1PADENYLTRANS-RXN) glucose-1-phosphate adenylyltransferase [c] : atp + g1p + h --> adpglc + ppi Glycolysis/Gluconeogenesis 2.7.7.27 b3430 ((LEFT REMOVE PROTON)) GLNS (GLUTAMINESYN-RXN) glutamine synthetase [c] : atp + glu-L + nh4 --> adp + gln-L + h + pi Glutamate metabolism 6.3.1.2 ( b3870 or b1297 ) ((LEFT SUBSTITUTE AMMONIA AMMONIUM) (RIGHT REMOVE PROTON)) GLNTRS (GLUTAMINE--TRNA-LIGASE-RXN) Glutaminyl-tRNA synthetase [c] : atp + gln-L + trnagln --> amp + glntrna + ppi Update 6.1.1.18 b0680 GLNabcpp (ABC-12-RXN) L-glutamine transport via ABC system (periplasm) atp[c] + gln-L[p] + h2o[c] --> adp[c] + gln-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0811 and b0810 and b0809 ) ((RIGHT REMOVE PROTON)) GLNtex L-glutamine transport via diffusion (extracellular to periplasm) gln-L[e] <==> gln-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLTPD (GALACTITOLPDEHYD-RXN) Galactitol-1-phosphate dehydrogenase [c] : galt1p + nad <==> h + nadh + tag6p-D Alternate Carbon Metabolism b2091 ((RIGHT REMOVE PROTON)) GLU5K (GLUTKIN-RXN) glutamate 5-kinase [c] : atp + glu-L --> adp + glu5p Arginine and Proline Metabolism 2.7.2.11 b0242 GLUABUTt7pp (TRANS-RXN-261) 4-aminobutyrate/glutamate antiport (periplasm) 4abut[c] + glu-L[p] <==> 4abut[p] + glu-L[c] Putative Transporters b1492 GLUCYS (GLUTCYSLIG-RXN) gamma-glutamylcysteine synthetase [c] : atp + cys-L + glu-L --> adp + glucys + h + pi Cofactor and Prosthetic Group Biosynthesis 6.3.2.2 b2688 ((RIGHT REMOVE PROTON)) GLUDC (GLUTDECARBOX-RXN) Glutamate Decarboxylase [c] : glu-L + h --> 4abut + co2 Glutamate metabolism 4.1.1.15 ( b3517 or b1493 ) ((LEFT REMOVE PROTON)) GLUDy glutamate dehydrogenase (NADP) [c] : glu-L + h2o + nadp <==> akg + h + nadph + nh4 Glutamate metabolism 1.4.1.4 b1761 GLUN (GLUTAMIN-RXN) glutaminase [c] : gln-L + h2o --> glu-L + nh4 Glutamate metabolism 3.5.1.2 ( b0485 or b1524 or b1812 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) GLUNpp glutaminase [p] : gln-L + h2o --> glu-L + nh4 Update 3.5.1.2 b2957 GLUPRT (PRPPAMIDOTRANS-RXN) glutamine phosphoribosyldiphosphate amidotransferase [c] : gln-L + h2o + prpp --> glu-L + ppi + pram Purine and Pyrimidine Biosynthesis 2.4.2.14 b2312 GLUR (GLUTRACE-RXN) glutamate racemase [c] : glu-D <==> glu-L Cell Envelope Biosynthesis 5.1.1.3 b3967 GLUSy (GLUTAMATESYN-RXN) glutamate synthase (NADPH) [c] : akg + gln-L + h + nadph --> (2) glu-L + nadp Glutamate metabolism 1.4.1.13 ( b3212 and b3213 ) ((LEFT REMOVE PROTON)) GLUTRR (GLUTRNAREDUCT-RXN) glutamyl-tRNA reductase [c] : glutrna + h + nadph --> glu1sa + nadp + trnaglu Cofactor and Prosthetic Group Biosynthesis b1210 GLUTRS (GLURS-RXN) Glutamyl-tRNA synthetase [c] : atp + glu-L + trnaglu --> amp + glutrna + ppi Cofactor and Prosthetic Group Biosynthesis 6.1.1.17 b2400 GLUabcpp (ABC-13-RXN) L-glutamate transport via ABC system (periplasm) atp[c] + glu-L[p] + h2o[c] --> adp[c] + glu-L[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0655 and b0654 and b0653 and b0652 ) ((RIGHT REMOVE PROTON)) GLUt2rpp (TRANS-RXN-162) "L-glutamate transport via proton symport, reversible (periplasm)" glu-L[p] + h[p] <==> glu-L[c] + h[c] "Transport, Inner Membrane" b4077 GLUt4pp (TRANS-RXN-122) Na+/glutamate symport (periplasm) glu-L[p] + na1[p] --> glu-L[c] + na1[c] "Transport, Inner Membrane" b3653 GLUtex L-glutamate transport via diffusion (extracellular to periplasm) glu-L[e] <==> glu-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLXCL (GLYOCARBOLIG-RXN) glyoxalate carboligase [c] : (2) glx + h --> 2h3oppan + co2 Glyoxylate Metabolism 4.1.1.47 b0507 ((LEFT REMOVE PROTON)) GLYALDtex Glyceraldehyde transport via diffusion (extracellular to periplasm) glyald[e] <==> glyald[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLYALDtpp Glyceraldehyde facilitated diffusion (periplasm) glyald[p] <==> glyald[c] "Transport, Inner Membrane" b3927 (:DIFFUSION) GLYAT (AKBLIG-RXN) glycine C-acetyltransferase [c] : accoa + gly <==> 2aobut + coa Glycine and Serine Metabolism 2.3.1.29 b3617 GLYBabcpp Glycine betaine transport via ABC system (periplasm) atp[c] + glyb[p] + h2o[c] --> adp[c] + glyb[c] + h[c] + pi[c] Putative Transporters ( b2128 and b2129 and b2130 and b2131 ) GLYBt2rpp (TRANS-RXN-29A) "Glycine betaine transport via proton symport, reversible (periplasm)" glyb[p] + h[p] <==> glyb[c] + h[c] Putative Transporters b1801 GLYBtex Glycine betaine transport via diffusion (extracellular to periplasm) glyb[e] <==> glyb[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLYC2Ptex Glycerol-2-phosphate transport via diffusion (extracellular to periplasm) glyc2p[e] <==> glyc2p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLYC3Pabcpp (ABC-34-RXN) sn-Glycerol 3-phosphate transport via ABC system (periplasm) atp[c] + glyc3p[p] + h2o[c] --> adp[c] + glyc3p[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b3452 and b3453 and b3450 and b3451 ) ((RIGHT REMOVE PROTON)) GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter (periplasm) glyc3p[p] + pi[c] --> glyc3p[c] + pi[p] "Transport, Inner Membrane" b2240 GLYC3Ptex Glycerol-3-phosphate transport via diffusion (extracellular to periplasm) glyc3p[e] <==> glyc3p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLYCAt2rpp "D-glycerate transport via proton symport, reversible (periplasm)" glyc-R[p] + h[p] <==> glyc-R[c] + h[c] "Transport, Inner Membrane" ( b3127 or b2789 ) GLYCAtex D-glycerate transport via diffusion (extracellular to periplasm) glyc-R[e] <==> glyc-R[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLYCDx (GLYCDEH-RXN) Glycerol dehydrogenase [c] : glyc + nad --> dha + h + nadh Alternate Carbon Metabolism 1.1.1.6 b3945 ((RIGHT REMOVE PROTON)) GLYCK (GLY3KIN-RXN) glycerate kinase [c] : atp + glyc-R --> 3pg + adp + h Glyoxylate Metabolism 2.7.1.31 b0514 ((RIGHT REMOVE PROTON)) GLYCK2 (GKI-RXN) glycerate kinase [c] : atp + glyc-R --> 2pg + adp + h Update 2.7.1.31 b3124 ((RIGHT REMOVE PROTON)) GLYCL (GCVMULTI-RXN) Glycine Cleavage System [c] : gly + nad + thf --> co2 + mlthf + nadh + nh4 Folate Metabolism ( b2904 and b2903 and b2905 and b0116 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) GLYCLTDx (GLYCOLATE-REDUCTASE-RXN) Glycolate dehydrogenase (NAD) [c] : glx + h + nadh --> glyclt + nad Glyoxylate Metabolism ( b3553 or b1033 ) (:METACYC (LEFT REMOVE PROTON)) GLYCLTDy (|GLYOXYLATE-REDUCTASE-(NADP+)-RXN|) Glycolate dehydrogenase (NADP) [c] : glx + h + nadph --> glyclt + nadp Glyoxylate Metabolism 1.1.1.26 ( b1033 or b3553 ) ((LEFT REMOVE PROTON)) GLYCLTt2rpp (TRANS-RXN-105) "glycolate transport via proton symport, reversible (periplasm)" glyclt[p] + h[p] <==> glyclt[c] + h[c] "Transport, Inner Membrane" ( b3603 or b2975 ) GLYCLTt4pp glycolate transport via sodium symport (periplasm) glyclt[p] + na1[p] --> glyclt[c] + na1[c] Update b4067 GLYCLTtex glycolate transport via diffusion (extracellular to periplasm) glyclt[e] <==> glyclt[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GLYCTO2 Glycolate oxidase [c] : glyclt + q8 --> glx + q8h2 Alternate Carbon Metabolism ( b2979 and b4467 and b4468 ) GLYCTO3 Glycolate oxidase [c] : glyclt + mqn8 --> glx + mql8 Alternate Carbon Metabolism ( b2979 and b4467 and b4468 ) GLYCTO4 Glycolate oxidase [c] : 2dmmq8 + glyclt --> 2dmmql8 + glx Alternate Carbon Metabolism ( b2979 and b4467 and b4468 ) GLYCtex (RXN0-1683) glycerol transport via diffusion (extracellular to periplasm) glyc[e] <==> glyc[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) GLYCtpp (TRANS-RXN-131) glycerol transport via channel (periplasm) glyc[c] <==> glyc[p] "Transport, Inner Membrane" b3927 GLYK (GLYCEROL-KIN-RXN) glycerol kinase [c] : atp + glyc --> adp + glyc3p + h Alternate Carbon Metabolism 2.7.1.30 b3926 ((RIGHT REMOVE PROTON)) GLYOX (GLYOXII-RXN) hydroxyacylglutathione hydrolase [c] : h2o + lgt-S --> gthrd + h + lac-D Methylglyoxal Metabolism 3.1.2.6 b0212 ((RIGHT REMOVE PROTON)) GLYOX3 (GLYOXIII-RXN) glyoxalase III [c] : h2o + mthgxl --> h + lac-D Update ((RIGHT REMOVE PROTON)) GLYTRS (GLYCINE--TRNA-LIGASE-RXN) Glycyl-tRNA synthetase [c] : atp + gly + trnagly --> amp + glytrna + ppi Update 6.1.1.14 ( b3559 and b3560 ) GLYt2rpp (TRANS-RXN-62B) glycine reversible transport via proton symport (periplasm) gly[p] + h[p] <==> gly[c] + h[c] "Transport, Inner Membrane" ( b4208 or b1801 or b0007 ) GLYtex Glycine transport via diffusion (extracellular to periplasm) gly[e] <==> gly[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GMAND (GDPMANDEHYDRA-RXN) GDP-D-mannose dehydratase [c] : gdpmann --> gdpddman + h2o Cell Envelope Biosynthesis 4.2.1.47 b2053 GMHEPAT (RXN0-4342) D-glycero-D-manno-hepose 1-phosphate adenyltransferase [c] : atp + gmhep1p + h --> adphep-DD + ppi Lipopolysaccharide Biosynthesis / Recycling b3052 ((LEFT REMOVE PROTON)) GMHEPK (RXN0-4341) D-glycero-D-manno-heptose 7-phosphate kinase [c] : atp + gmhep7p --> adp + gmhep17bp + h Lipopolysaccharide Biosynthesis / Recycling b3052 ((RIGHT REMOVE PROTON)) GMHEPPA "D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase" [c] : gmhep17bp + h2o --> gmhep1p + pi Lipopolysaccharide Biosynthesis / Recycling b0200 GMPR (GMP-REDUCT-RXN) GMP reductase [c] : gmp + (2) h + nadph --> imp + nadp + nh4 Purine and Pyrimidine Biosynthesis 1.7.1.7 b0104 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) GMPS2 (GMP-SYN-GLUT-RXN) GMP synthase [c] : atp + gln-L + h2o + xmp --> amp + glu-L + gmp + (2) h + ppi Purine and Pyrimidine Biosynthesis 6.3.5.2 b2507 ((RIGHT REMOVE PROTON)) GMPtex GMP transport via diffusion (extracellular to periplasm) gmp[e] <==> gmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GND (6PGLUCONDEHYDROG-RXN) phosphogluconate dehydrogenase [c] : 6pgc + nadp --> co2 + nadph + ru5p-D Pentose Phosphate Pathway 1.1.1.44 b2029 (:EXPANDED-RXN-MATCH) GNK (GLUCONOKIN-RXN) gluconokinase [c] : atp + glcn --> 6pgc + adp + h Alternate Carbon Metabolism 2.7.1.12 ( b3437 or b4268 ) ((RIGHT REMOVE PROTON)) GOFUCR GDP-4-oxo-L-fucose reductase [c] : gdpofuc + h + nadph --> gdpfuc + nadp Cell Envelope Biosynthesis b2052 (:UNMAPPED-CPDS) GP4GH Gp4G hydrolase [c] : gp4g + h2o --> (2) gdp + (2) h Nucleotide Salvage Pathway b0049 GPDDA1 (3.1.4.2-RXN) Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) [c] : g3pc + h2o --> chol + glyc3p + h Glycerophospholipid Metabolism 3.1.4.46 b3449 (:METACYC (RIGHT REMOVE PROTON)) GPDDA1pp Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) [p] : g3pc + h2o --> chol + glyc3p + h Update 3.1.4.46 b2239 GPDDA2 Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) [c] : g3pe + h2o --> etha + glyc3p + h Glycerophospholipid Metabolism 3.1.4.46 b3449 GPDDA2pp Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) [p] : g3pe + h2o --> etha + glyc3p + h Update 3.1.4.46 b2239 GPDDA3 Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) [c] : g3ps + h2o --> glyc3p + h + ser-L Glycerophospholipid Metabolism 3.1.4.46 b3449 (:UNMAPPED-CPDS) GPDDA3pp Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) [p] : g3ps + h2o --> glyc3p + h + ser-L Update 3.1.4.46 b2239 (:UNMAPPED-CPDS) GPDDA4 Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) [c] : g3pg + h2o --> glyc + glyc3p + h Glycerophospholipid Metabolism 3.1.4.46 b3449 GPDDA4pp Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) [p] : g3pg + h2o --> glyc + glyc3p + h Update 3.1.4.46 b2239 GPDDA5 (3.1.4.44-RXN) Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) [c] : g3pi + h2o --> glyc3p + h + inost Glycerophospholipid Metabolism 3.1.4.46 b3449 (:METACYC (RIGHT REMOVE PROTON)) GPDDA5pp Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) [p] : g3pi + h2o --> glyc3p + h + inost Update 3.1.4.46 b2239 GRTT (FPPSYN-RXN) geranyltranstransferase [c] : grdp + ipdp --> frdp + ppi Cofactor and Prosthetic Group Biosynthesis 2.5.1.10 b0421 GRXR (PRODISULFREDUCT-A-RXN) glutaredoxin reductase [c] : grxox + (2) gthrd --> grxrd + gthox Update 1.8.4.2 (:EXPANDED-RXN-MATCH) GSNK (GUANOSINEKIN-RXN) guanosine kinase [c] : atp + gsn --> adp + gmp + h Nucleotide Salvage Pathway b0477 ((RIGHT REMOVE PROTON)) GSNt2pp (TRANS-RXN-108) guanosine transport in via proton symport (periplasm) gsn[p] + h[p] --> gsn[c] + h[c] "Transport, Inner Membrane" b2964 (:EXPANDED-RXN-MATCH) GSNtex guanosine transport via diffusion (extracellular to periplasm) gsn[e] <==> gsn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GSPMDA (GSPAMID-RXN) Glutathionylspermidine amidase [c] : gtspmd + h2o --> gthrd + spmd Arginine and Proline Metabolism 3.5.1.78 b2988 GSPMDS (GSPSYN-RXN) Glutathionylspermidine synthetase [c] : atp + gthrd + spmd --> adp + gtspmd + h + pi Arginine and Proline Metabolism 6.3.1.8 b2988 ((RIGHT REMOVE PROTON)) GTHOXtex glutathione (ox) transport via diffusion (extracellular to periplasm) gthox[e] <==> gthox[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GTHOr (GLUTATHIONE-REDUCT-NADPH-RXN) glutathione oxidoreductase [c] : gthox + h + nadph <==> (2) gthrd + nadp Cofactor and Prosthetic Group Biosynthesis 1.8.1.7 b3500 GTHRDHpp glutathione hydralase (periplasmic) [p] : gthrd + h2o --> cgly + glu-L Update b3447 (:UNMAPPED-CPDS) GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) atp[c] + gthrd[c] + h2o[c] --> adp[c] + gthrd[p] + h[c] + pi[c] "Transport, Inner Membrane" ( b0886 and b0887 ) GTHRDabcpp Reduced glutathione via ABC system (periplasm) atp[c] + gthrd[p] + h2o[c] --> adp[c] + gthrd[c] + h[c] + pi[c] "Transport, Inner Membrane" ( b0829 and b0830 and b0831 and b0832 ) GTHRDtex glutathione transport via diffusion (extracellular to periplasm) gthrd[e] <==> gthrd[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GTHS (GLUTATHIONE-SYN-RXN) glutathione synthetase [c] : atp + glucys + gly --> adp + gthrd + h + pi Cofactor and Prosthetic Group Biosynthesis 6.3.2.3 b2947 ((RIGHT REMOVE PROTON)) GTPCI (GTP-CYCLOHYDRO-I-RXN) GTP cyclohydrolase I [c] : gtp + h2o --> ahdt + for + h Cofactor and Prosthetic Group Biosynthesis 3.5.4.16 b2153 ((RIGHT REMOVE PROTON)) GTPCII2 (GTP-CYCLOHYDRO-II-RXN) GTP cyclohydrolase II (25drapp) [c] : gtp + (3) h2o --> 25drapp + for + (2) h + ppi Cofactor and Prosthetic Group Biosynthesis b1277 ((RIGHT REMOVE PROTON)) GTPDPDP (PPPGPPHYDRO-RXN) "guanosine-5'-triphosphate,3'-diphosphate diphosphatase" [c] : gdptp + h2o --> h + pi + ppgpp Update 3.6.1.40 b3779 ((RIGHT REMOVE PROTON)) GTPDPK (GTPPYPHOSKIN-RXN) GTP diphosphokinase [c] : atp + gtp --> amp + gdptp + h Update 2.7.6.5 b2784 ((RIGHT REMOVE PROTON)) GTPHs spontaneous GTP amine hydrolysis [c] : gtp + h + h2o --> nh4 + xtp Update GTPtex GTP transport via diffusion (extracellular to periplasm) gtp[e] <==> gtp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) GUAD (GUANINE-DEAMINASE-RXN) guanine deaminase [c] : gua + h + h2o --> nh4 + xan Nucleotide Salvage Pathway 3.5.4.3 b2883 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) GUAPRT (GUANPRIBOSYLTRAN-RXN) guanine phosphoribosyltransferase [c] : gua + prpp --> gmp + ppi Nucleotide Salvage Pathway 2.4.2.8 ( b0238 or b0125 ) GUAt2pp guanine transport in via proton symport (periplasm) gua[p] + h[p] --> gua[c] + h[c] Putative Transporters b3654 GUAtex Guanine transport via diffusion (extracellular to periplasm) gua[e] <==> gua[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) GUAtpp Guanine transport via diffusion (periplasm) gua[p] <==> gua[c] "Transport, Inner Membrane" (:DIFFUSION) GUI1 (GLUCUROISOM-RXN) glucuronate isomerase (D-glucuronate) [c] : glcur <==> fruur Alternate Carbon Metabolism 5.3.1.12 b3092 GUI2 (GALACTUROISOM-RXN) glucuronate isomerase (D-galacturonate) [c] : galur <==> tagur Alternate Carbon Metabolism 5.3.1.12 b3092 GUR1PPpp Glucuronate 1-phosphate phosphatase (periplasm) [p] : glcur1p + h2o --> glcur + pi Update H2O2tex hydrogen peroxide transport via diffusion (external) h2o2[e] <==> h2o2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) H2Otex H2O transport via diffusion (extracellular to periplasm) h2o[e] <==> h2o[p] "Transport, Outer Membrane" ( b1319 or b1377 or b0929 or b2215 or b0241 or b0957 or b3875 ) (:DIFFUSION) H2Otpp (TRANS-RXN-145) H2O transport via diffusion (periplasm) h2o[p] <==> h2o[c] "Transport, Inner Membrane" b0875 H2SO Hydrogen sulfide oxidation [c] : h2s + (2) o2 --> (2) h + so4 Update H2St1pp h2s transport (periplasm) h2s[c] --> h2s[p] Update (:DIFFUSION) H2Stex h2s transport via diffusion (extracellular to periplasm) h2s[e] <==> h2s[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) H2tex hydrogen transport via diffusion (extracellular to periplasm) h2[e] <==> h2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) H2tpp hydrogen transport diffusion (periplasm) h2[p] <==> h2[c] Update (:DIFFUSION) HACD1i (1.1.1.211-RXN OHACYL-COA-DEHYDROG-RXN) 3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA) [c] : 3hbcoa + nad --> aacoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) (:METACYC :EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) HACD2i 3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA) [c] : 3hhcoa + nad --> 3ohcoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) HACD3i (OHACYL-COA-DEHYDROG-RXN) 3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA) [c] : 3hocoa + nad --> 3oocoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) ((RIGHT REMOVE PROTON)) HACD4i (OHACYL-COA-DEHYDROG-RXN) 3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA) [c] : 3hdcoa + nad --> 3odcoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) ((RIGHT REMOVE PROTON)) HACD5i (OHACYL-COA-DEHYDROG-RXN) 3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA) [c] : 3hddcoa + nad --> 3oddcoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) ((RIGHT REMOVE PROTON)) HACD6i (OHACYL-COA-DEHYDROG-RXN) 3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA) [c] : 3htdcoa + nad --> 3otdcoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) ((RIGHT REMOVE PROTON)) HACD7i 3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA) [c] : 3hhdcoa + nad --> 3ohdcoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b2341 or b3846 ) HACD8i (OHACYL-COA-DEHYDROG-RXN) 3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA) [c] : 3hodcoa + nad --> 3oodcoa + h + nadh Membrane Lipid Metabolism 1.1.1.35 ( b3846 or b2341 ) ((RIGHT REMOVE PROTON)) HBZOPT (4OHBENZOATE-OCTAPRENYLTRANSFER-RXN) Hydroxybenzoate octaprenyltransferase [c] : 4hbz + octdp --> 3ophb + ppi Cofactor and Prosthetic Group Biosynthesis b4040 HCINNMt2rpp "3-hydroxycinnamic acid transport via proton symport, reversible (periplasm)" 3hcinnm[p] + h[p] <==> 3hcinnm[c] + h[c] Putative Transporters b0353 (:UNMAPPED-CPDS) HCINNMtex 3-hydroxycinnamic acid transport via diffusion (extracellular to periplasm) 3hcinnm[e] <==> 3hcinnm[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) HCO3E HCO3 equilibration reaction [c] : co2 + h2o <==> h + hco3 Unassigned 4.2.1.1 ( b0126 or b0339 ) HCYSMT (HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN) homocysteine S-methyltransferase [c] : amet + hcys-L --> ahcys + h + met-L Update 2.1.1.10 b0261 ((RIGHT REMOVE PROTON)) HCYSMT2 (MMUM-RXN) Homocysteine Methyltransferase [c] : hcys-L + mmet --> h + (2) met-L Update b0261 ((RIGHT REMOVE PROTON)) HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) hdca[e] --> hdca[p] "Transport, Outer Membrane" b2344 (:DIFFUSION) HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) hdcea[e] --> hdcea[p] "Transport, Outer Membrane" b2344 (:DIFFUSION) HDCOAI (ENOYL-COA-DELTA-ISOM-RXN) hexadecenoyl-coa cis-trans isomerization [c] : hdcoa --> hdd2coa Membrane Lipid Metabolism 5.3.3.8 b3846 HEMEOS (HEMEOSYN-RXN) Heme O synthase [c] : frdp + h2o + pheme --> hemeO + ppi Cofactor and Prosthetic Group Biosynthesis b0428 HEPK1 LPS heptose kinase I (LPS core synthesis) [c] : atp + hhlipa --> adp + h + phhlipa Lipopolysaccharide Biosynthesis / Recycling b3630 (:UNMAPPED-CPDS) HEPK2 LPS heptose kinase II (LPS core synthesis) [c] : atp + hphhlipa --> adp + h + phphhlipa Lipopolysaccharide Biosynthesis / Recycling b3625 (:UNMAPPED-CPDS) HEPT1 (RXN0-5118) heptosyltransferase I (LPS core synthesis) [c] : adphep-LD + lipa --> adp + h + hlipa Lipopolysaccharide Biosynthesis / Recycling b3621 ((RIGHT REMOVE PROTON)) HEPT2 heptosyltransferase II (LPS core synthesis) [c] : adphep-LD + hlipa --> adp + h + hhlipa Lipopolysaccharide Biosynthesis / Recycling b3620 (:UNMAPPED-CPDS) HEPT3 heptosyltransferase III (LPS core synthesis) [c] : adphep-LD + phhlipa --> adp + h + hphhlipa Lipopolysaccharide Biosynthesis / Recycling b3632 (:UNMAPPED-CPDS) HEPT4 heptosyltransferase IV (LPS core synthesis) [c] : adphep-LD + gggagicolipa --> adp + colipa + h Lipopolysaccharide Biosynthesis / Recycling b3623 (:UNMAPPED-CPDS) HETZK (THIAZOLSYN3-RXN) hydroxyethylthiazole kinase [c] : 4mhetz + atp --> 4mpetz + adp + h Cofactor and Prosthetic Group Biosynthesis 2.7.1.50 b2104 ((RIGHT REMOVE PROTON)) HEX1 (GLUCOKIN-RXN) hexokinase (D-glucose:ATP) [c] : atp + glc-D --> adp + g6p + h Glycolysis/Gluconeogenesis 2.7.1.1 b2388 ((RIGHT REMOVE PROTON)) HEX4 (MANNKIN-RXN) hexokinase (D-mannose:ATP) [c] : atp + man --> adp + h + man6p Update 2.7.1.7 ((RIGHT REMOVE PROTON)) HEX7 (FRUCTOKINASE-RXN) hexokinase (D-fructose:ATP) [c] : atp + fru --> adp + f6p + h Update 2.7.1.1 b0394 ((RIGHT REMOVE PROTON)) HEXt2rpp "hexanoate transport via proton symport, reversible (periplasm)" h[p] + hxa[p] <==> h[c] + hxa[c] Putative Transporters b2223 HG2abcpp Mercury (Hg+2) ABC transporter (periplasm) atp[c] + h2o[c] + hg2[c] --> adp[c] + h[c] + hg2[p] + pi[c] "Transport, Inner Membrane" b3469 HG2tex mercury (Hg+2) transport via diffusion (extracellular to periplasm) hg2[e] <==> hg2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) HISTD histidinol dehydrogenase [c] : h2o + histd + (2) nad --> (3) h + his-L + (2) nadh Histidine Metabolism 1.1.1.23 b2020 HISTP (HISTIDPHOS-RXN) histidinol-phosphatase [c] : h2o + hisp --> histd + pi Histidine Metabolism 3.1.3.15 b2022 HISTRS (HISTIDINE--TRNA-LIGASE-RXN) Histidyl-tRNA synthetase [c] : atp + his-L + trnahis --> amp + histrna + ppi Update 6.1.1.21 b2514 HISabcpp (ABC-14-RXN) L-histidine transport via ABC system (periplasm) atp[c] + h2o[c] + his-L[p] --> adp[c] + h[c] + his-L[c] + pi[c] "Transport, Inner Membrane" ( b2309 and b2307 and b2306 and b2308 ) ((RIGHT REMOVE PROTON)) HISt2rpp L-histidine reversible transport via proton symport (periplasm) h[p] + his-L[p] <==> h[c] + his-L[c] "Transport, Inner Membrane" b0112 HIStex L-histidine transport via diffusion (extracellular to periplasm) his-L[e] <==> his-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) HKNDDH (MHPCHYDROL-RXN) "2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase" [c] : h2o + hkndd --> h + op4en + succ Alternate Carbon Metabolism b0349 ((RIGHT REMOVE PROTON)) HKNTDH 2-hydroxy-6-ketononotrienedioate hydrolase [c] : h2o + hkntd --> fum + h + op4en Alternate Carbon Metabolism b0349 (:UNMAPPED-CPDS) HMBS (OHMETHYLBILANESYN-RXN) hydroxymethylbilane synthase [c] : h2o + (4) ppbng --> hmbil + (4) nh4 Cofactor and Prosthetic Group Biosynthesis 4.3.1.8 b3805 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) HMPK1 (OHMETPYRKIN-RXN) hydroxymethylpyrimidine kinase (ATP) [c] : 4ahmmp + atp --> 4ampm + adp + h Cofactor and Prosthetic Group Biosynthesis 2.7.1.49 ( b2103 or b2418 ) ((RIGHT REMOVE PROTON)) HOMt2pp (TRANS-RXN-242) L-homoserineserine efflux via proton symport h[p] + hom-L[c] --> h[c] + hom-L[p] "Transport, Inner Membrane" ( b0813 or b3824 ) HOMtex L-homoserine transport via diffusion (extracellular to periplasm) hom-L[e] <==> hom-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) HOPNTAL (MHPELY-RXN) 4-hydroxy-2-oxopentanoate aldolase [c] : 4h2opntn --> acald + pyr Alternate Carbon Metabolism b0352 HPPK2 (H2PTERIDINEPYROPHOSPHOKIN-RXN) 6-hydroxymethyl-dihydropterin pyrophosphokinase [c] : 6hmhpt + atp --> 6hmhptpp + amp + h Cofactor and Prosthetic Group Biosynthesis b0142 ((RIGHT REMOVE PROTON)) HPPPNDO (1.13.11.16-RXN) "2,3-dihydroxypheylpropionate 1,2-dioxygenase" [c] : dhpppn + o2 --> h + hkndd Alternate Carbon Metabolism 1.13.11.16 b0348 ((RIGHT REMOVE PROTON)) HPPPNt2rpp (TRANS-RXN-61) "3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm)" 3hpppn[p] + h[p] <==> 3hpppn[c] + h[c] Putative Transporters b0353 HPPPNtex 3-(3-hydroxyphenyl)propionate transport via diffusion (extracellular to periplasm) 3hpppn[e] <==> 3hpppn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) HPYRI (RXN0-305) hydroxypyruvate isomerase [c] : hpyr <==> 2h3oppan Alternate Carbon Metabolism 5.3.1.22 b0508 HPYRRx (GLYCERATE-DEHYDROGENASE-RXN) Hydroxypyruvate reductase (NADH) [c] : h + hpyr + nadh --> glyc-R + nad Alternate Carbon Metabolism ( b1033 or b3553 ) (:METACYC (LEFT REMOVE PROTON)) HPYRRy (RXN0-300) Hydroxypyruvate reductase (NADPH) [c] : h + hpyr + nadph --> glyc-R + nadp Alternate Carbon Metabolism ( b3553 or b1033 ) ((LEFT REMOVE PROTON)) HSDy (HOMOSERDEHYDROG-RXN) homoserine dehydrogenase (NADPH) [c] : hom-L + nadp <==> aspsa + h + nadph Threonine and Lysine Metabolism 1.1.1.3 ( b3940 or b0002 ) (:EXPANDED-RXN-MATCH) HSK (HOMOSERKIN-RXN) homoserine kinase [c] : atp + hom-L --> adp + h + phom Threonine and Lysine Metabolism 2.7.1.39 b0003 ((RIGHT REMOVE PROTON)) HSST (HOMSUCTRAN-RXN) homoserine O-succinyltransferase [c] : hom-L + succoa --> coa + suchms Methionine Metabolism 2.3.1.46 b4013 HSTPT (HISTAMINOTRANS-RXN) histidinol-phosphate transaminase [c] : glu-L + imacp --> akg + hisp Histidine Metabolism 2.6.1.9 b2021 HXAND (RXN-7682) hypoxanthine dehydrogenase [c] : h2o + hxan + nad --> h + nadh + xan Update ( b2866 and b2867 and b2868 ) (:METACYC) HXAtex Hexanoate transport via diffusion (extracellular to periplasm) hxa[e] <==> hxa[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) HXCT Acetyl-CoA:hexanoate-CoA transferase [c] : accoa + hxa --> ac + hxcoa Alternate Carbon Metabolism 2.8.3.8 ( b2221 and b2222 ) HXPRT (HYPOXANPRIBOSYLTRAN-RXN HYPXPRIBOSYLTRAN-RXN) hypoxanthine phosphoribosyltransferase (Hypoxanthine) [c] : hxan + prpp --> imp + ppi Nucleotide Salvage Pathway 2.4.2.8 ( b0238 or b0125 ) HYD1pp hydrogenase (ubiquinone-8: 2 protons) (periplasm) (2) h[c] + h2[c] + q8[c] --> (2) h[p] + q8h2[c] Oxidative Phosphorylation 1.18.99.1 ( ( b0972 and b0973 and b0974 ) or ( b2994 and b2997 ) or ( b2719 and b2720 and b2721 and b2722 and b2723 and b2724 ) ) HYD2pp (1.12.5.1-RXN) Hydrogenase (menaquinone8: 2 protons) (periplasm) (2) h[c] + h2[c] + mqn8[c] --> (2) h[p] + mql8[c] Oxidative Phosphorylation 1.18.99.1 ( ( b0972 and b0973 and b0974 ) or ( b2994 and b2997 ) ) (:METACYC (LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) HYD3pp Hydrogenase (Demethylmenaquinone-8: 2 protons) (periplasm) 2dmmq8[c] + (2) h[c] + h2[c] --> 2dmmql8[c] + (2) h[p] Oxidative Phosphorylation 1.18.99.1 ( ( b0972 and b0973 and b0974 ) or ( b2994 and b2997 ) ) HYPOE hypothetical enyme [c] : h2o + pyam5p --> pi + pydam Cofactor and Prosthetic Group Biosynthesis HYXNtex Hypoxanthine transport via diffusion (extracellular to periplasm) hxan[e] <==> hxan[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) HYXNtpp Hypoxanthine transport (periplasm) hxan[p] <==> hxan[c] "Transport, Inner Membrane" (:DIFFUSION) Htex (TRANS-RXN-90) proton transport via diffusion (extracellular to periplasm) h[e] <==> h[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) ((LEFT REMOVE PROTON)) ICDHyr (ISOCITDEH-RXN) isocitrate dehydrogenase (NADP) [c] : icit + nadp <==> akg + co2 + nadph Citric Acid Cycle 1.1.1.42 b1136 ICHORS (ISOCHORSYN-RXN) isochorismate synthase [c] : chor <==> ichor Cofactor and Prosthetic Group Biosynthesis 5.4.99.6 b2265 ICHORSi (ISOCHORSYN-RXN) Isochorismate Synthase [c] : chor --> ichor Cofactor and Prosthetic Group Biosynthesis b0593 ICHORT (ISOCHORMAT-RXN) isochorismatase [c] : h2o + ichor --> 23ddhb + pyr Cofactor and Prosthetic Group Biosynthesis 3.3.2.1 b0595 ICL (ISOCIT-CLEAV-RXN) Isocitrate lyase [c] : icit --> glx + succ Anaplerotic reactions 4.1.3.1 b4015 IDOND (IDONDEHYD-RXN) L-idonate 5-dehydrogenase [c] : 5dglcn + h + nadh <==> idon-L + nad Alternate Carbon Metabolism b4267 ((LEFT REMOVE PROTON)) IDOND2 (L-IDONATE-2-DEHYDROGENASE-RXN) L-indonate 5-dehydrogenase (NADP) [c] : 5dglcn + h + nadph --> idon-L + nadp Alternate Carbon Metabolism b4267 (:METACYC (LEFT REMOVE PROTON)) IDONt2rpp (TRANS-RXN-181) "L-idonate transport via proton symport, reversible (periplasm)" h[p] + idon-L[p] <==> h[c] + idon-L[c] "Transport, Inner Membrane" b4265 IDONtex L-idonate transport via diffusion (extracellular to periplasm) idon-L[e] <==> idon-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) IG3PS (GLUTAMIDOTRANS-RXN) Imidazole-glycerol-3-phosphate synthase [c] : gln-L + prlp --> aicar + eig3p + glu-L + h Histidine Metabolism ( b2023 and b2025 ) ((RIGHT REMOVE PROTON)) IGPDH (IMIDPHOSDEHYD-RXN) imidazoleglycerol-phosphate dehydratase [c] : eig3p --> h2o + imacp Histidine Metabolism 4.2.1.19 b2022 IGPS (IGPSYN-RXN) indole-3-glycerol-phosphate synthase [c] : 2cpr5p + h --> 3ig3p + co2 + h2o "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.1.1.48 b1262 ((LEFT REMOVE PROTON)) ILETA (BRANCHED-CHAINAMINOTRANSFERILEU-RXN) isoleucine transaminase [c] : akg + ile-L <==> 3mop + glu-L "Valine, Leucine, and Isoleucine Metabolism" 2.6.1.42 b3770 ILETRS (ISOLEUCINE--TRNA-LIGASE-RXN) Isoleucyl-tRNA synthetase [c] : atp + ile-L + trnaile --> amp + iletrna + ppi Update 6.1.1.5 b0026 ILEabcpp (ABC-15-RXN) L-isoleucine transport via ABC system (periplasm) atp[c] + h2o[c] + ile-L[p] --> adp[c] + h[c] + ile-L[c] + pi[c] "Transport, Inner Membrane" ( b3454 and b3455 and b3457 and b3460 and b3456 ) ((RIGHT REMOVE PROTON)) ILEt2rpp L-isoleucine reversible transport via proton symport (periplasm) h[p] + ile-L[p] <==> h[c] + ile-L[c] "Transport, Inner Membrane" b0401 ILEtex L-isoleucine transport via diffusion (extracellular to periplasm) ile-L[e] <==> ile-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) IMPC (IMPCYCLOHYDROLASE-RXN) IMP cyclohydrolase [c] : h2o + imp <==> fprica Purine and Pyrimidine Biosynthesis 3.5.4.10 b4006 IMPD (IMP-DEHYDROG-RXN) IMP dehydrogenase [c] : h2o + imp + nad --> h + nadh + xmp Purine and Pyrimidine Biosynthesis 1.1.1.205 b2508 ((RIGHT REMOVE PROTON)) IMPtex IMP transport via diffusion (extracellular to periplasm) imp[e] <==> imp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) INDOLEt2pp (TRANS-RXN-142) "Indole transport via proton symport, irreversible (periplasm)" h[c] + indole[c] --> h[p] + indole[p] Update ( b3265 and b3266 ) INDOLEt2rpp (TRANS-RXN-142) "Indole transport via proton symport, reversible (periplasm)" h[p] + indole[p] <==> h[c] + indole[c] "Transport, Inner Membrane" b3161 INDOLEtex Indole transport via diffusion (extracellular to periplasm) indole[e] <==> indole[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) INOSTt4pp Na+/myo-inositol symporter (periplasm) inost[p] + na1[p] --> inost[c] + na1[c] Update b3679 INSH (INOSINE-NUCLEOSIDASE-RXN) Inosine hydrolase [c] : h2o + ins --> hxan + rib-D Update 3.2.2.8 b0030 INSK (INOSINEKIN-RXN) insosine kinase [c] : atp + ins --> adp + h + imp Nucleotide Salvage Pathway 2.7.1.73 b0477 ((RIGHT REMOVE PROTON)) INSTtex inositol transport via diffusion (extracellular to periplasm) inost[e] <==> inost[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) INSt2pp (TRANS-RXN-108G) inosine transport in via proton symport (periplasm) h[p] + ins[p] --> h[c] + ins[c] "Transport, Inner Membrane" b2964 INSt2rpp (TRANS-RXN-108G) "inosine transport in via proton symport, reversible (periplasm)" h[p] + ins[p] <==> h[c] + ins[c] "Transport, Inner Membrane" b2406 INStex inosine transport via diffusion (extracellular to periplasm) ins[e] <==> ins[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) IPDDI (IPPISOM-RXN) isopentenyl-diphosphate D-isomerase [c] : ipdp <==> dmpp Cofactor and Prosthetic Group Biosynthesis 5.3.3.2 b2889 IPDPS (ISPH2-RXN) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp) [c] : h + h2mb4p + nadh --> h2o + ipdp + nad Cofactor and Prosthetic Group Biosynthesis b0029 (:EXPANDED-RXN-MATCH) IPMD (3-ISOPROPYLMALDEHYDROG-RXN) 3-isopropylmalate dehydrogenase [c] : 3c2hmp + nad --> 3c4mop + h + nadh "Valine, Leucine, and Isoleucine Metabolism" 1.1.1.85 b0073 IPPMIa 3-isopropylmalate dehydratase [c] : 3c2hmp <==> 2ippm + h2o "Valine, Leucine, and Isoleucine Metabolism" 4.2.1.33 ( b0071 and b0072 ) (:UNMAPPED-CPDS) IPPMIb 2-isopropylmalate hydratase [c] : 2ippm + h2o <==> 3c3hmp "Valine, Leucine, and Isoleucine Metabolism" 4.2.1.33 ( b0071 and b0072 ) (:UNMAPPED-CPDS) IPPS (2-ISOPROPYLMALATESYN-RXN) 2-isopropylmalate synthase [c] : 3mob + accoa + h2o --> 3c3hmp + coa + h "Valine, Leucine, and Isoleucine Metabolism" 4.1.3.12 b0074 ((RIGHT REMOVE PROTON)) ISETACabcpp isethionate transport via ABC system (periplasm) atp[c] + h2o[c] + isetac[p] --> adp[c] + h[c] + isetac[c] + pi[c] Update ( ( b0365 and b0366 and b0367 ) or ( b0936 and b0933 and b0934 ) ) ISETACtex isethionate transport via diffusion (extracellular to periplasm) isetac[e] <==> isetac[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) K2L4Aabcpp KDO(2)-lipid IV A transport via ABC system (periplasm) atp[c] + h2o[c] + kdo2lipid4[c] --> adp[c] + h[c] + kdo2lipid4[p] + pi[c] "Transport, Inner Membrane" b0914 K2L4Atex KDO(2)-lipid IV A transport via vector (periplasm to extracellular) kdo2lipid4[p] --> kdo2lipid4[e] "Transport, Outer Membrane" (:DIFFUSION) KARA1 (ACETOLACTREDUCTOISOM-RXN) "ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)" [c] : 23dhmb + nadp <==> alac-S + h + nadph "Valine, Leucine, and Isoleucine Metabolism" 1.1.1.86 b3774 KARA2 (ACETOOHBUTREDUCTOISOM-RXN) ketol-acid reductoisomerase (2-Acetolactate) [c] : 2ahbut + h + nadph <==> 23dhmp + nadp "Valine, Leucine, and Isoleucine Metabolism" 1.1.1.86 b3774 ((LEFT REMOVE PROTON)) KAS14 (3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-RXN) beta-ketoacyl-ACP synthase [c] : acACP + h + malACP --> ACP + actACP + co2 Membrane Lipid Metabolism 2.3.1.41 ( b2323 or b1095 ) (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) KAS15 (3-OXOACYL-ACP-COA-SYNTHIII-RXN) beta-ketoacyl-ACP synthase (2) [c] : accoa + h + malACP --> actACP + co2 + coa Membrane Lipid Metabolism b1091 (:EXPANDED-RXN-MATCH (LEFT REMOVE PROTON)) KAT1 (ACETYL-COA-ACETYLTRANSFER-RXN) 3-ketoacyl-CoA thiolase [c] : aacoa + coa --> (2) accoa Membrane Lipid Metabolism 2.3.1.16 ( b2342 or b3845 ) KAT2 3-ketoacyl-CoA thiolase [c] : 3ohcoa + coa --> accoa + btcoa Membrane Lipid Metabolism 2.3.1.16 ( b2342 or b3845 ) KAT3 3-ketoacyl-CoA thiolase [c] : 3oocoa + coa --> accoa + hxcoa Membrane Lipid Metabolism 2.3.1.16 ( b3845 or b2342 ) KAT4 3-ketoacyl-CoA thiolase [c] : 3odcoa + coa --> accoa + occoa Membrane Lipid Metabolism 2.3.1.16 ( b3845 or b2342 ) KAT5 (KETOACYLCOATHIOL-RXN RXN-3641) 3-ketoacyl-CoA thiolase [c] : 3oddcoa + coa --> accoa + dcacoa Membrane Lipid Metabolism 2.3.1.16 ( b3845 or b2342 ) KAT6 3-ketoacyl-CoA thiolase [c] : 3otdcoa + coa --> accoa + ddcacoa Membrane Lipid Metabolism 2.3.1.16 ( b3845 or b2342 ) KAT7 (2.3.1.155-RXN) 3-ketoacyl-CoA thiolase [c] : 3ohdcoa + coa --> accoa + tdcoa Membrane Lipid Metabolism 2.3.1.16 ( b3845 or b2342 ) (:METACYC) KAT8 3-ketoacyl-CoA thiolase [c] : 3oodcoa + coa --> accoa + pmtcoa Membrane Lipid Metabolism 2.3.1.16 ( b3845 or b2342 ) KDOCT2 (CPM-KDOSYNTH-RXN) 3-deoxy-manno-octulosonate cytidylyltransferase [c] : ctp + kdo --> ckdo + ppi Lipopolysaccharide Biosynthesis / Recycling 2.7.7.38 b0918 KDOPP (KDO-8PPHOSPHAT-RXN) 3-deoxy-manno-octulosonate-8-phosphatase [c] : h2o + kdo8p --> kdo + pi Lipopolysaccharide Biosynthesis / Recycling 3.1.3.45 b3198 KDOPS (KDO-8PSYNTH-RXN) 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase [c] : ara5p + h2o + pep --> kdo8p + pi Lipopolysaccharide Biosynthesis / Recycling 4.1.2.16 b1215 KG6PDC (RXN0-705) 3-keto-L-gulonate 6-phosphate decarboxylase [c] : 3dhgulnp + h --> co2 + xu5p-L Alternate Carbon Metabolism ( b4196 or b3581 ) ((LEFT REMOVE PROTON)) Kabcpp (TRANS-RXN-2) Potassium ABC transporter (periplasm) atp[c] + h2o[c] + k[p] --> adp[c] + h[c] + k[c] + pi[c] "Transport, Inner Membrane" ( b0698 and b0697 and b0696 ) ((RIGHT REMOVE PROTON)) Kt2pp (TRANS-RXN-3) potassium transport in via proton symport (periplasm) h[p] + k[p] --> h[c] + k[c] Update ( b3747 or b1250 ) Kt2rpp (TRANS-RXN-3) potassium reversible transport via proton symport (periplasm) h[p] + k[p] <==> h[c] + k[c] "Transport, Inner Membrane" ( ( b1291 and b3290 and b3849 ) or ( b1291 and b3290 and b1363 ) ) Kt3pp (TRANS-RXN-42) potassium transport out via proton antiport (periplasm) h[p] + k[c] --> h[c] + k[p] "Tranpsort, Inner Membrane" ( b3350 or b0047 or b1216 or b0842 ) Ktex potassium transport via diffusion (extracellular to periplasm) k[e] <==> k[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) L-LACD2 L-Lactate dehydrogenase (ubiquinone) [c] : lac-L + q8 --> pyr + q8h2 Oxidative Phosphorylation 1.1.2.3 b3605 L-LACD3 (L-LACTDEHYDROGFMN-RXN) L-Lactate dehydrogenase (menaquinone) [c] : lac-L + mqn8 --> mql8 + pyr Oxidative Phosphorylation 1.1.2.3 b3605 (:EXPANDED-RXN-MATCH) L-LACt2rpp (TRANS-RXN-104) L-lactate reversible transport via proton symport (periplasm) h[p] + lac-L[p] <==> h[c] + lac-L[c] "Transport, Inner Membrane" ( b3603 or b2975 ) L-LACtex L-lactate transport via diffusion (extracellular to periplasm) lac-L[e] <==> lac-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) LA4NTpp "4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))" [p] : colipa + uLa4n --> acolipa + udcpp Lipopolysaccharide Biosynthesis / Recycling b2257 (:UNMAPPED-CPDS) LACZ (BETAGALACTOSID-RXN) b-galactosidase [c] : h2o + lcts --> gal + glc-D Alternate Carbon Metabolism 3.2.1.23 b0344 LACZpp b-galactosidase [p] : h2o + lcts --> gal + glc-D Update 3.2.1.108 b2132 LADGMDH (RXN0-961) L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase [c] : LalaDgluMdap + h2o --> 26dap-M + LalaDglu Murein Recycling b1326 LALDO2x (D-LACTALDEHYDE-DEHYDROGENASE-RXN) D-Lactaldehyde:NAD+ 1-oxidoreductase [c] : h + mthgxl + nadh --> lald-D + nad Update 1.1.1.21 b3945 (:METACYC (LEFT REMOVE PROTON)) LALGP L-alanyl-gamma-L-glutamate peptidase [c] : LalaLglu + h2o --> ala-L + glu-L Murein Recycling b0237 (:UNMAPPED-CPDS) LCADi (LACTALDDEHYDROG-RXN) lactaldehyde dehydrogenase [c] : h2o + lald-L + nad --> (2) h + lac-L + nadh Alternate Carbon Metabolism 1.2.1.21 b1415 ((RIGHT REMOVE PROTON)) LCARR "lacaldehyde reductase (R-propane-1,2-diol forming)" [c] : h + lald-D + nadh <==> 12ppd-R + nad Update 1.1.1.77 (:UNMAPPED-CPDS) LCARS (LACTALDREDUCT-RXN) "lacaldehyde reductase (S-propane-1,2-diol forming)" [c] : h + lald-L + nadh <==> 12ppd-S + nad Alternate Carbon Metabolism 1.1.1.77 b2799 ((LEFT REMOVE PROTON)) LCTSt3ipp (TRANS-RXN-82) Lactose transport via proton aniport (periplasm) h[p] + lcts[c] --> h[c] + lcts[p] "Transport, Inner Membrane" ( b2170 or b0070 or b1528 ) LCTStex (RXN0-1683) Lactose transport via diffusion (extracellular to periplasm) lcts[e] <==> lcts[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) LCTStpp (TRANS-RXN-24) Lactose transport via proton symport (periplasm) h[p] + lcts[p] <==> h[c] + lcts[c] "Transport, Inner Membrane" b0343 LDH_D (DLACTDEHYDROGNAD-RXN) D-lactate dehydrogenase [c] : lac-D + nad <==> h + nadh + pyr Pyruvate Metabolism 1.1.1.28 ( b2133 or b1380 ) ((RIGHT REMOVE PROTON)) LDH_D2 (DLACTDEHYDROGFAD-RXN) D-lactate dehydrogenase [c] : lac-D + q8 --> pyr + q8h2 Oxidative Phosphorylation 1.1.2.4 b2133 LEUTAi (BRANCHED-CHAINAMINOTRANSFERLEU-RXN) leucine transaminase (irreversible) [c] : 4mop + glu-L --> akg + leu-L "Valine, Leucine, and Isoleucine Metabolism" 2.6.1.42 ( b3770 or b4054 ) LEUTRS (LEUCINE--TRNA-LIGASE-RXN) Leucyl-tRNA synthetase [c] : atp + leu-L + trnaleu --> amp + leutrna + ppi Update 6.1.1.4 b0642 LEUabcpp (ABC-35-RXN) L-leucine transport via ABC system (periplasm) atp[c] + h2o[c] + leu-L[p] --> adp[c] + h[c] + leu-L[c] + pi[c] "Transport, Inner Membrane" ( ( b3454 and b3455 and b3457 and b3460 and b3456 ) or ( b3454 and b3455 and b3457 and b3458 and b3456 ) ) ((RIGHT REMOVE PROTON)) LEUt2rpp L-leucine reversible transport via proton symport (periplasm) h[p] + leu-L[p] <==> h[c] + leu-L[c] "Transport, Inner Membrane" b0401 LEUtex L-leucine transport via diffusion (extracellular to periplasm) leu-L[e] <==> leu-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) LGTHL (GLYOXI-RXN) lactoylglutathione lyase [c] : gthrd + mthgxl --> lgt-S Methylglyoxal Metabolism 4.4.1.5 b1651 LIPACabcpp lipid (cold) A transport via ABC system (periplasm) atp[c] + h2o[c] + lipa_cold[c] --> adp[c] + h[c] + lipa_cold[p] + pi[c] Lipopolysaccharide Biosynthesis / Recycling b0914 LIPAHT2ex core oligosaccharide lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane) [e] : colipa + h + hdca --> h2o + hacolipa Lipopolysaccharide Biosynthesis / Recycling b0622 (:UNMAPPED-CPDS) LIPAHTex Lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane) [e] : h + hdca + lipa --> h2o + halipa Lipopolysaccharide Biosynthesis / Recycling b0622 LIPAabcpp lipid A transport via ABC system (periplasm) atp[c] + h2o[c] + lipa[c] --> adp[c] + h[c] + lipa[p] + pi[c] Lipopolysaccharide Biosynthesis / Recycling b0914 LIPAtex (RXN0-1683) lipid A transport via vector (periplasm to extracellular) lipa[p] --> lipa[e] Lipopolysaccharide Biosynthesis / Recycling (:EXPANDED-RXN-MATCH) LPADSS (LIPIDADISACCHARIDESYNTH-RXN) Lipid A disaccaride synthase [c] : lipidX + u23ga --> h + lipidAds + udp Lipopolysaccharide Biosynthesis / Recycling 2.4.1.182 b0182 ((RIGHT REMOVE PROTON)) LPLIPAL1A120pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm)" [p] : 1ddecg3p + h2o --> ddca + glyc3p + h Glycerophospholipid Metabolism 3.1.1.5 b0494 LPLIPAL1A140pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm)" [p] : 1tdecg3p + h2o --> glyc3p + h + ttdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1A141pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:1) (periplasm)" [p] : 1tdec7eg3p + h2o --> glyc3p + h + ttdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1A160pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:0) (periplasm)" [p] : 1hdecg3p + h2o --> glyc3p + h + hdca Glycerophospholipid Metabolism 3.1.1.5 b0494 LPLIPAL1A161pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:1) (periplasm)" [p] : 1hdec9eg3p + h2o --> glyc3p + h + hdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 LPLIPAL1A180pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:0) (periplasm)" [p] : 1odecg3p + h2o --> glyc3p + h + ocdca Glycerophospholipid Metabolism 3.1.1.5 b0494 LPLIPAL1A181pp "Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:1) (periplasm)" [p] : 1odec11eg3p + h2o --> glyc3p + h + ocdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 LPLIPAL1E120pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm)" [p] : 1agpe120 + h2o --> ddca + g3pe + h Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1E140pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm)" [p] : 1agpe140 + h2o --> g3pe + h + ttdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1E141pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm)" [p] : 1agpe141 + h2o --> g3pe + h + ttdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1E160pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm)" [p] : 1agpe160 + h2o --> g3pe + h + hdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1E161pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:1) (periplasm)" [p] : 1agpe161 + h2o --> g3pe + h + hdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1E180pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:0) (periplasm)" [p] : 1agpe180 + h2o --> g3pe + h + ocdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1E181pp "Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:1) (periplasm)" [p] : 1agpe181 + h2o --> g3pe + h + ocdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G120pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C12:0) (periplasm)" [p] : 1agpg120 + h2o --> ddca + g3pg + h Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G140pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:0) (periplasm)" [p] : 1agpg140 + h2o --> g3pg + h + ttdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G141pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:1) (periplasm)" [p] : 1agpg141 + h2o --> g3pg + h + ttdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G160pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:0) (periplasm)" [p] : 1agpg160 + h2o --> g3pg + h + hdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G161pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm)" [p] : 1agpg161 + h2o --> g3pg + h + hdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G180pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm)" [p] : 1agpg180 + h2o --> g3pg + h + ocdca Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL1G181pp "Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm)" [p] : 1agpg181 + h2o --> g3pg + h + ocdcea Glycerophospholipid Metabolism 3.1.1.5 b0494 (:UNMAPPED-CPDS) LPLIPAL2A120 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C12:0)" [c] : 2ddecg3p + h2o --> ddca + glyc3p + h Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2A140 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:0)" [c] : 2tdecg3p + h2o --> glyc3p + h + ttdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2A141 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:1)" [c] : 2tdec7eg3p + h2o --> glyc3p + h + ttdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2A160 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:0)" [c] : 2hdecg3p + h2o --> glyc3p + h + hdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2A161 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:1)" [c] : 2hdec9eg3p + h2o --> glyc3p + h + hdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2A180 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:0)" [c] : 2odecg3p + h2o --> glyc3p + h + ocdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2A181 "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:1)" [c] : 2odec11eg3p + h2o --> glyc3p + h + ocdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE120 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C12:0)" [c] : 2agpe120 + pg120 --> apg120 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE140 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:0)" [c] : 2agpe140 + pg140 --> apg140 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE141 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:1)" [c] : 2agpe141 + pg141 --> apg141 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE160 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:0)" [c] : 2agpe160 + pg160 --> apg160 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE161 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:1)" [c] : 2agpe161 + pg161 --> apg161 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE180 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:0)" [c] : 2agpe180 + pg180 --> apg180 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATE181 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:1)" [c] : 2agpe181 + pg181 --> apg181 + g3pe Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG120 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C12:0)" [c] : 2agpg120 + pg120 --> apg120 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG140 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:0)" [c] : 2agpg140 + pg140 --> apg140 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG141 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:1)" [c] : 2agpg141 + pg141 --> apg141 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG160 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:0)" [c] : 2agpg160 + pg160 --> apg160 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG161 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:1)" [c] : 2agpg161 + pg161 --> apg161 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG180 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:0)" [c] : 2agpg180 + pg180 --> apg180 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2ATG181 "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:1)" [c] : 2agpg181 + pg181 --> apg181 + g3pg Glycerophospholipid Metabolism b3825 (:UNMAPPED-CPDS) LPLIPAL2E120 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C12:0)" [c] : 2agpe120 + h2o --> ddca + g3pe + h Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2E140 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:0)" [c] : 2agpe140 + h2o --> g3pe + h + ttdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2E141 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:1)" [c] : 2agpe141 + h2o --> g3pe + h + ttdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2E160 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:0)" [c] : 2agpe160 + h2o --> g3pe + h + hdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2E161 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:1)" [c] : 2agpe161 + h2o --> g3pe + h + hdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2E180 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:0)" [c] : 2agpe180 + h2o --> g3pe + h + ocdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2E181 "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:1)" [c] : 2agpe181 + h2o --> g3pe + h + ocdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G120 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C12:0)" [c] : 2agpg120 + h2o --> ddca + g3pg + h Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G140 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:0)" [c] : 2agpg140 + h2o --> g3pg + h + ttdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G141 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:1)" [c] : 2agpg141 + h2o --> g3pg + h + ttdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G160 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:0)" [c] : 2agpg160 + h2o --> g3pg + h + hdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G161 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:1)" [c] : 2agpg161 + h2o --> g3pg + h + hdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G180 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:0)" [c] : 2agpg180 + h2o --> g3pg + h + ocdca Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LPLIPAL2G181 "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:1)" [c] : 2agpg181 + h2o --> g3pg + h + ocdcea Glycerophospholipid Metabolism 3.1.1.5 b3825 (:UNMAPPED-CPDS) LSERDHr (RXN0-2201) L-serine dehydrogenase [c] : nadp + ser-L <==> 2amsa + h + nadph Update b1539 LYSDC (LYSDECARBOX-RXN) lysine decarboxylase [c] : h + lys-L --> 15dap + co2 Threonine and Lysine Metabolism 4.1.1.18 ( b0186 or b4131 ) ((LEFT REMOVE PROTON)) LYSTRS (LYSINE--TRNA-LIGASE-RXN) Lysyl-tRNA synthetase [c] : atp + lys-L + trnalys --> amp + lystrna + ppi Update 6.1.1.6 ( b2890 or b4129 ) LYSabcpp (ABC-3-RXN) L-lysine transport via ABC system (periplasm) atp[c] + h2o[c] + lys-L[p] --> adp[c] + h[c] + lys-L[c] + pi[c] "Transport, Inner Membrane" ( b2310 and b2307 and b2306 and b2308 ) ((RIGHT REMOVE PROTON)) LYSt2rpp (TRANS-RXN-58) L-lysine reversible transport via proton symport (periplasm) h[p] + lys-L[p] <==> h[c] + lys-L[c] "Transport, Inner Membrane" b2156 LYStex L-lysine transport via diffusion (extracellular to periplasm) lys-L[e] <==> lys-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) LYXI (LYXISOM-RXN) Lyxose isomerase [c] : lyx-L --> xylu-L Update b3903 LYXt2pp L-Lyxose transport via proton symport (periplasm) h[p] + lyx-L[p] --> h[c] + lyx-L[c] Update b3907 LYXtex (RXN0-1683) L-Lyxose transport via diffusion (extracellular to periplasm) lyx-L[e] <==> lyx-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) M1PD (MANNPDEHYDROG-RXN) mannitol-1-phosphate 5-dehydrogenase [c] : mnl1p + nad <==> f6p + h + nadh Alternate Carbon Metabolism 1.1.1.17 b3600 ((RIGHT REMOVE PROTON)) MACPD (MALONYL-ACPDECARBOX-RXN) Malonyl-ACP decarboxylase [c] : h + malACP --> acACP + co2 Membrane Lipid Metabolism b2323 ((LEFT REMOVE PROTON)) MALDDH (1.1.1.83-RXN) malate decarboxylating oxidoreductase (decarboxylating) [c] : mal-D + nad --> co2 + nadh + pyr Update 1.1.1.83 b1800 (:METACYC) MALDt2_2pp D-Malate transport via proton symport (2 H) (periplasm) (2) h[p] + mal-D[p] --> (2) h[c] + mal-D[c] "Transport, Inner Membrane" b3528 MALDtex D-Malate transport via diffusion (extracellular to periplasm) mal-D[e] <==> mal-D[p] "Transport, Outer Membrane Porin" ( b1377 or b0929 or b2215 or b0241 ) (:DIFFUSION) MALS (MALSYN-RXN) malate synthase [c] : accoa + glx + h2o --> coa + h + mal-L Anaplerotic reactions 4.1.3.2 ( b4014 or b2976 ) ((RIGHT REMOVE PROTON)) MALTATr (MALTACETYLTRAN-RXN) maltose O-acetyltransferase [c] : accoa + malt <==> acmalt + coa Update 2.3.1.79 b0459 MALTHXabcpp maltohexaose transport via ABC system (periplasm) atp[c] + h2o[c] + malthx[p] --> adp[c] + h[c] + malthx[c] + pi[c] "Transport, Inner Membrane" ( b4034 and b4033 and b4032 and b4035 ) MALTHXtexi maltohexaose transport via diffusion (extracellular to periplasm) irreversible malthx[e] --> malthx[p] "Transport, Outer Membrane" b4036 (:DIFFUSION) MALTPTabcpp maltopentaose transport via ABC system (periplasm) atp[c] + h2o[c] + maltpt[p] --> adp[c] + h[c] + maltpt[c] + pi[c] "Transport, Inner Membrane" ( b4034 and b4033 and b4032 and b4035 ) MALTPTtexi maltopentaoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible maltpt[e] --> maltpt[p] "Transport, Outer Membrane" b4036 (:DIFFUSION) MALTTRabcpp Maltotriose transport via ABC system (periplasm) atp[c] + h2o[c] + malttr[p] --> adp[c] + h[c] + malttr[c] + pi[c] "Transport, Inner Membrane" ( b4034 and b4033 and b4032 and b4035 ) MALTTRtexi (RXN0-1683) Maltotriose transport via diffusion (extracellular to periplasm) irreversible malttr[e] --> malttr[p] "Transport, Outer Membrane" b4036 (:EXPANDED-RXN-MATCH) MALTTTRabcpp maltotetraose transport via ABC system (periplasm) atp[c] + h2o[c] + maltttr[p] --> adp[c] + h[c] + maltttr[c] + pi[c] "Transport, Inner Membrane" ( b4034 and b4033 and b4032 and b4035 ) MALTTTRtexi (RXN0-1683) maltotetraoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible maltttr[e] --> maltttr[p] "Transport, Outer Membrane" b4036 (:EXPANDED-RXN-MATCH) MALTabcpp (ABC-16-RXN) maltose transport via ABC system (periplasm) atp[c] + h2o[c] + malt[p] --> adp[c] + h[c] + malt[c] + pi[c] "Transport, Inner Membrane" ( b4034 and b4033 and b4032 and b4035 ) ((RIGHT REMOVE PROTON)) MALTptspp maltose transport via PEP:Pyr PTS (periplasm) malt[p] + pep[c] --> malt6p[c] + pyr[c] "Transport, Inner Membrane" ( b2417 and b1621 and b2415 and b2416 ) MALTtexi (RXN0-1741) maltoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible malt[e] --> malt[p] "Transport, Outer Membrane" b4036 MALt2_2pp Malate transport via proton symport (2 H) (periplasm) (2) h[p] + mal-L[p] --> (2) h[c] + mal-L[c] "Transport, Inner Membrane" b3528 MALt2_3pp Malate transport via proton symport (3 H) (periplasm) (3) h[p] + mal-L[p] --> (3) h[c] + mal-L[c] "Transport, Inner Membrane" ( b4123 or b4138 ) MALtex Malate transport via diffusion (extracellular to periplasm) mal-L[e] <==> mal-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MAN1PT2 (MANNPGUANYLTRANGDP-RXN) mannose-1-phosphate guanylyltransferase (GDP) [c] : gdp + h + man1p --> gdpmann + pi Cell Envelope Biosynthesis 2.7.7.22 b2049 ((LEFT REMOVE PROTON)) MAN6PI (MANNPISOM-RXN) mannose-6-phosphate isomerase [c] : man6p <==> f6p Alternate Carbon Metabolism 5.3.1.8 b1613 MAN6Pt6_2pp Mannose-6-phosphate transport via phosphate antiport (periplasm) man6p[p] + (2) pi[c] --> man6p[c] + (2) pi[p] "Transport, Inner Membrane" b3666 MAN6Ptex Mannose 6-phosphate transport via diffusion (extracellular to periplasm) man6p[e] <==> man6p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MANAO (MANNONOXIDOREDUCT-RXN) Mannonate oxidoreductase [c] : mana + nad <==> fruur + h + nadh Alternate Carbon Metabolism 1.1.1.57 b4323 ((RIGHT REMOVE PROTON)) MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) manglyc[p] + pep[c] --> man6pglyc[c] + pyr[c] Update ( b0731 and b2415 and b2416 ) (:UNMAPPED-CPDS) MANGLYCtex 2-O-alpha-mannosyl-D-glycerate transport via diffusion (extracellular to periplasm) manglyc[e] <==> manglyc[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase [c] : h2o + man6pglyc --> glyc-R + man6p Update b0732 (:UNMAPPED-CPDS) MANptspp (TRANS-RXN-165) D-mannose transport via PEP:Pyr PTS (periplasm) man[p] + pep[c] --> man6p[c] + pyr[c] "Transport, Inner Membrane" ( b1817 and b1818 and b1819 and b2415 and b2416 ) MANtex (RXN0-1683) D-mannose transport via diffusion (extracellular to periplasm) man[e] <==> man[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) MCITD (2-METHYLCITRATE-DEHYDRATASE-RXN) 2-methylcitrate dehydratase [c] : 2mcit --> 2mcacn + h2o Alternate Carbon Metabolism 4.2.1.79 b0334 MCITL2 (METHYLISOCITRATE-LYASE-RXN) methylisocitrate lyase [c] : micit <==> pyr + succ Alternate Carbon Metabolism 4.1.3.30 b0331 MCITS (2-METHYLCITRATE-SYNTHASE-RXN) 2-methylcitrate synthase [c] : h2o + oaa + ppcoa --> 2mcit + coa + h Alternate Carbon Metabolism 4.1.3.31 b0333 ((RIGHT REMOVE PROTON)) MCOATA (MALONYL-COA-ACP-TRANSACYL-RXN) Malonyl-CoA-ACP transacylase [c] : ACP + malcoa <==> coa + malACP Membrane Lipid Metabolism 2.3.1.39 b1092 MCPST (MERCAPYSTRANS-RXN) 3-mercaptopyruvate sulfurtransferase [c] : cyan + mercppyr --> h + pyr + tcynt Update 2.8.1.2 b2521 ((RIGHT REMOVE PROTON)) MCTP1App murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm) [p] : murein5p5p --> ala-D + murein5px4p Murein Biosynthesis ( b0635 or b3396 or b0149 or b0084 ) (:UNMAPPED-CPDS) MCTP1Bpp murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm) [p] : murein5p5p --> alaala + murein5px3p Murein Biosynthesis ( b0149 or b3396 ) (:UNMAPPED-CPDS) MCTP2App murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm) [p] : murein5p5p5p --> (2) ala-D + murein5px4px4p Murein Biosynthesis ( b0084 or b0635 or b3396 or b0149 ) (:UNMAPPED-CPDS) MDDCP1pp "murein D,D-carboxypeptidase (murein5px4p) (periplasm)" [p] : h2o + murein5px4p --> ala-D + murein4px4p Murein Biosynthesis 3.4.16.4 ( b0632 or b3182 or b0839 or b2010 ) (:UNMAPPED-CPDS) MDDCP2pp "murein D,D-carboxypeptidase (murein5px4px4p) (periplasm)" [p] : h2o + murein5px4px4p --> ala-D + murein4px4px4p Murein Biosynthesis 3.4.16.4 ( b0632 or b3182 or b0839 or b2010 ) (:UNMAPPED-CPDS) MDDCP3pp "murein D,D-carboxypeptidase (murein5p5p) (periplasm)" [p] : h2o + murein5p5p --> ala-D + murein5p4p Murein Biosynthesis 3.4.16.4 ( b0632 or b3182 or b0839 or b2010 ) (:UNMAPPED-CPDS) MDDCP4pp "murein D,D-carboxypeptidase (murein5p4p) (periplasm)" [p] : h2o + murein5p4p --> ala-D + murein4p4p Murein Biosynthesis 3.4.16.4 ( b0632 or b3182 or b0839 or b2010 ) (:UNMAPPED-CPDS) MDDCP5pp "murein D,D-carboxypeptidase (murein5p3p) (periplasm)" [p] : h2o + murein5p3p --> ala-D + murein4p3p Murein Biosynthesis 3.4.16.4 ( b0632 or b3182 or b0839 or b2010 ) (:UNMAPPED-CPDS) MDDEP1pp "murein D,D-endopeptidase (murein4px4p) (periplasm)" [p] : h2o + murein4px4p --> murein4p4p Murein Recycling ( b3182 or b2328 or b2134 ) (:UNMAPPED-CPDS) MDDEP2pp "murein D,D-endopeptidase (murein3px4p) (periplasm)" [p] : h2o + murein3px4p --> murein4p3p Murein Recycling ( b3182 or b2328 or b2134 ) (:UNMAPPED-CPDS) MDDEP3pp "murein D,D-endopeptidase (murein5px4p) (periplasm)" [p] : h2o + murein5px4p --> murein5p4p Murein Recycling ( b3182 or b2328 or b2134 ) (:UNMAPPED-CPDS) MDDEP4pp "murein D,D-endopeptidase (murein4px4px4p) (periplasm)" [p] : h2o + murein4px4px4p --> murein4px4p4p Murein Recycling ( b3182 or b2328 or b2134 ) (:UNMAPPED-CPDS) MDH (MALATE-DEH-RXN) malate dehydrogenase [c] : mal-L + nad <==> h + nadh + oaa Citric Acid Cycle 1.1.1.37 b3236 ((RIGHT REMOVE PROTON)) MDH2 Malate dehydrogenase (ubiquinone 8 as acceptor) [c] : mal-L + q8 --> oaa + q8h2 Citric Acid Cycle 1.1.99.16 b2210 MDH3 (RXNI-3) Malate dehydrogenase (menaquinone 8 as acceptor) [c] : mal-L + mqn8 --> mql8 + oaa Citric Acid Cycle 1.1.99.16 b2210 (:METACYC) MDRPD (R145-RXN) 5-Methylthio-5-deoxy-D-ribulose 1-phosphate dehydratase [c] : 5mdru1p --> dkmpp + h2o Arginine and Proline Metabolism (:METACYC) ME1 (MALIC-NAD-RXN) malic enzyme (NAD) [c] : mal-L + nad --> co2 + nadh + pyr Anaplerotic reactions 1.1.1.38 b1479 ME2 (MALIC-NADP-RXN) malic enzyme (NADP) [c] : mal-L + nadp --> co2 + nadph + pyr Anaplerotic reactions 1.1.1.40 b2463 MECDPDH2 "2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase" [c] : 2mecdp + nadh --> h2mb4p + h2o + nad Cofactor and Prosthetic Group Biosynthesis b2515 MECDPS (RXN0-302) "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" [c] : 2p4c2me --> 2mecdp + cmp Cofactor and Prosthetic Group Biosynthesis b2746 MELIBt2pp (TRANS-RXN-94) melibiose transport in via symport (periplasm) h[p] + melib[p] --> h[c] + melib[c] "Transport, Inner Membrane" b4120 MELIBt3ipp melibiose transport in via antiport (periplasm) h[p] + melib[c] --> h[c] + melib[p] "Transport, Inner Membrane" b1528 MELIBtex (RXN0-1683) melibiose transport via diffusion (extracellular to periplasm) melib[e] <==> melib[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) MEPCT (2.7.7.60-RXN) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [c] : 2me4p + ctp + h --> 4c2me + ppi Cofactor and Prosthetic Group Biosynthesis b2747 ((LEFT REMOVE PROTON)) METAT (S-ADENMETSYN-RXN) methionine adenosyltransferase [c] : atp + h2o + met-L --> amet + pi + ppi Methionine Metabolism 2.5.1.6 b2942 METDabcpp (TRANS-RXN0-202) D-methionine transport via ABC system (periplasm) atp[c] + h2o[c] + met-D[p] --> adp[c] + h[c] + met-D[c] + pi[c] "Transport, Inner Membrane" ( b0198 and b0199 and b0197 ) ((RIGHT REMOVE PROTON)) METDtex D-methionine transport via diffusion (extracellular to periplasm) met-D[e] <==> met-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) METOX1s methionine spontaneous oxidation [c] : h2o2 + met-L --> h2o + metsox-S-L Update METOX2s methionine spontaneous oxidation 2 [c] : h2o2 + met-L --> h2o + metsox-R-L Update (:UNMAPPED-CPDS) METS (HOMOCYSMETB12-RXN) methionine synthase [c] : 5mthf + hcys-L --> h + met-L + thf Methionine Metabolism 2.1.1.13 ( b4019 or b3829 ) ((RIGHT REMOVE PROTON)) METSOX1abcpp L-methionine S-oxide transport via ABC system (periplasm) atp[c] + h2o[c] + metsox-S-L[p] --> adp[c] + h[c] + metsox-S-L[c] + pi[c] Update METSOX1tex L-methionine S-oxide diffusion (extracellular) metsox-S-L[e] <==> metsox-S-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) METSOX2abcpp L-methionine R-oxide transport via ABC system (periplasm) atp[c] + h2o[c] + metsox-R-L[p] --> adp[c] + h[c] + metsox-R-L[c] + pi[c] Update (:UNMAPPED-CPDS) METSOX2tex L-methionine R-oxide diffusion (extracellular) metsox-R-L[e] <==> metsox-R-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) METSOXR1 (METHIONINE-S-OXIDE-REDUCTASE-RXN) L-methionine-S-oxide reductase [c] : metsox-S-L + trdrd --> h2o + met-L + trdox Update 1.8.4.5 b4219 (:EXPANDED-RXN-MATCH) METSOXR2 L-methionine-R-sulfoxide reductase [c] : metsox-R-L + trdrd --> h2o + met-L + trdox Update b1778 (:UNMAPPED-CPDS) METTRS (METHIONINE--TRNA-LIGASE-RXN) Methionyl-tRNA synthetase [c] : atp + met-L + trnamet --> amp + mettrna + ppi Update 6.1.1.10 b2114 METabcpp (RXN0-4522) L-methionine transport via ABC system (periplasm) atp[c] + h2o[c] + met-L[p] --> adp[c] + h[c] + met-L[c] + pi[c] "Transport, Inner Membrane" ( b0198 and b0199 and b0197 ) ((RIGHT REMOVE PROTON)) METtex L-methionine transport via diffusion (extracellular to periplasm) met-L[e] <==> met-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MG2tex magnesium (Mg+2) transport via diffusion (extracellular to periplasm) mg2[e] <==> mg2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MG2tpp (TRANS-RXN-141) magnesium transport via diffusion mg2[p] <==> mg2[c] "Transport, Inner Membrane" b3816 MG2uabcpp (TRANS-RXN-250) "Magnesium (Mg+2) ABC transporter (ubtake, periplasm)" atp[c] + h2o[c] + mg2[p] --> adp[c] + h[c] + mg2[c] + pi[c] "Transport, Inner Membrane" b4242 ((RIGHT REMOVE PROTON)) MGSA (METHGLYSYN-RXN) methylglyoxal synthase [c] : dhap --> mthgxl + pi Methylglyoxal Metabolism 4.2.3.3 b0963 MI1PP (RXN-7252) myo-inositol 1-phosphatase [c] : h2o + mi1p-D --> inost + pi Cell Envelope Biosynthesis 3.1.3.25 b2533 (:METACYC) MICITD (4.2.1.99-RXN) 2-methylisocitrate dehydratase [c] : 2mcacn + h2o --> micit Alternate Carbon Metabolism 4.2.1.99 b0118 MINOHPtexi myo-inositol phosphate transport via diffusion (extracellular to periplasm) minohp[e] --> minohp[p] "Transport, Outer Membrane" (:DIFFUSION) MLDCP1App "murein L,D-carboxypeptidase (murein5px4p) (periplasm)" [p] : h2o + murein5px4p --> alaala + murein3px4p Murein Biosynthesis 3.4.17.13 (:UNMAPPED-CPDS) MLDCP1Bpp "murein L,D-carboxypeptidase (murein4p4p) (periplasm)" [p] : h2o + murein4p4p --> ala-D + murein4p3p Murein Biosynthesis 3.4.17.13 (:UNMAPPED-CPDS) MLDCP2App "murein L,D-carboxypeptidase (murein5p5p) (periplasm)" [p] : h2o + murein5p5p --> alaala + murein5p3p Murein Biosynthesis 3.4.17.13 (:UNMAPPED-CPDS) MLDCP2Bpp "murein L,D-carboxypeptidase (murein4p3p) (periplasm)" [p] : h2o + murein4p3p --> ala-D + murein3p3p Murein Biosynthesis 3.4.17.13 (:UNMAPPED-CPDS) MLDCP3App "murein L,D-carboxypeptidase (murein5px3p) (periplasm)" [p] : h2o + murein5px3p --> alaala + murein3px3p Murein Biosynthesis 3.4.17.13 (:UNMAPPED-CPDS) MLDEP1pp "murein L,D-endopeptidase (murein3px3p) (periplasm)" [p] : h2o + murein3px3p --> murein3p3p Murein Recycling (:UNMAPPED-CPDS) MLDEP2pp "murein L,D-endopeptidase (murein5px3p) (periplasm)" [p] : h2o + murein5px3p --> murein5p3p Murein Recycling (:UNMAPPED-CPDS) MLTG1 Maltodextrin glucosidase (maltotriose) [c] : h2o + malttr --> glc-D + malt Alternate Carbon Metabolism b0403 MLTG2 (MALTET-RXN) Maltodextrin glucosidase (maltotetraose) [c] : h2o + maltttr --> glc-D + malttr Alternate Carbon Metabolism b0403 MLTG3 Maltodextrin glucosidase (maltopentaose) [c] : h2o + maltpt --> glc-D + maltttr Alternate Carbon Metabolism b0403 MLTG4 Maltodextrin glucosidase (maltohexaose) [c] : h2o + malthx --> glc-D + maltpt Alternate Carbon Metabolism b0403 MLTG5 Maltodextrin glucosidase (maltoheptaose) [c] : h2o + malthp --> glc-D + malthx Alternate Carbon Metabolism b0403 MLTGY1pp murein lytic transglycosylase (murein4p4p) (periplasm) [p] : murein4p4p --> (2) anhgm4p Murein Recycling ( b4392 or b2813 or b2701 or b1193 or b2963 ) (:UNMAPPED-CPDS) MLTGY2pp murein lytic transglycosylase (murein4p3p) (periplasm) [p] : murein4p3p --> anhgm3p + anhgm4p Murein Recycling ( b4392 or b2813 or b2701 or b1193 or b2963 ) (:UNMAPPED-CPDS) MLTGY3pp murein lytic transglycosylase (murein3p3p) (periplasm) [p] : murein3p3p --> (2) anhgm3p Murein Recycling ( b4392 or b2813 or b2701 or b1193 or b2963 ) (:UNMAPPED-CPDS) MLTGY4pp murein lytic transglycosylase (murein4px4p4p) (periplasm) [p] : murein4px4p4p --> anhgm4p + murein4px4p Murein Recycling ( b4392 or b2813 or b2701 or b1193 or b2963 ) (:UNMAPPED-CPDS) MLTP1 Maltodextrin phosphorylase (maltopentaose) [c] : maltpt + pi <==> g1p + maltttr Alternate Carbon Metabolism b3417 MLTP2 Maltodextrin phosphorylase (maltohexaose) [c] : malthx + pi <==> g1p + maltpt Alternate Carbon Metabolism b3417 MLTP3 Maltodextrin phosphorylase (maltoheptaose) [c] : malthp + pi <==> g1p + malthx Alternate Carbon Metabolism b3417 MMCD (METHYLMALONYL-COA-DECARBOXYLASE-RXN) Methylmalonyl-CoA decarboxylase [c] : h + mmcoa-S --> co2 + ppcoa Alternate Carbon Metabolism 4.1.1.41 b2919 (:METACYC (LEFT REMOVE PROTON)) MME (METHYLMALONYL-COA-EPIM-RXN) methylmalonyl-CoA epimerase [c] : mmcoa-R <==> mmcoa-S Alternate Carbon Metabolism 5.1.99.1 MMETt2pp S-methylmethionine permease (periplasm) h[p] + mmet[p] --> h[c] + mmet[c] "Transport, Inner Membrane" b0260 MMETtex S-methyl-L-methionine transport via diffusion (extracellular to periplasm) mmet[e] <==> mmet[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MMM2 (METHYLMALONYL-COA-MUT-RXN) Methylmalonyl-CoA mutase [c] : succoa --> mmcoa-R Alternate Carbon Metabolism 5.4.99.2 b2917 MN2tpp manganese transport in/out via permease (no H+) mn2[p] <==> mn2[c] "Transport, Inner Membrane" b3040 (:DIFFUSION) MN6PP (SUGAR-PHOSPHATASE-RXN) mannose 6-phosphate phosphatase [c] : h2o + man6p --> man + pi Update b0822 (:EXPANDED-RXN-MATCH) MNLptspp (TRANS-RXN-156) mannitol transport via PEP:Pyr PTS (periplasm) mnl[p] + pep[c] --> mnl1p[c] + pyr[c] "Transport, Inner Membrane" ( b3599 and b2415 and b2416 ) MNLtex mannitol transport via diffusion (extracellular to periplasm) mnl[e] <==> mnl[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MNNH (MANNONDEHYDRAT-RXN) D-mannonate hydrolyase [c] : mana --> 2ddglcn + h2o Alternate Carbon Metabolism 4.2.1.8 b4322 MNt2pp (TRANS-RXN-241) manganese (Mn+2) transport in via proton symport (periplasm) h[p] + mn2[p] --> h[c] + mn2[c] "Transport, Inner Membrane" b2392 MNtex Manganese (Mn+2) transport via diffusion (extracellular to periplasm) mn2[e] <==> mn2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MOAT (KDOTRANS-RXN) 3-deoxy-D-manno-octulosonic acid transferase [c] : ckdo + lipidA --> cmp + h + kdolipid4 Lipopolysaccharide Biosynthesis / Recycling b3633 ((RIGHT REMOVE PROTON)) MOAT2 (KDOTRANS2-RXN) 3-deoxy-D-manno-octulosonic acid transferase [c] : ckdo + kdolipid4 --> cmp + h + kdo2lipid4 Lipopolysaccharide Biosynthesis / Recycling b3633 ((RIGHT REMOVE PROTON)) MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) [c] : ckdo + phphhlipa --> cmp + h + kphphhlipa Lipopolysaccharide Biosynthesis / Recycling b3624 (:UNMAPPED-CPDS) MOBDabcpp (ABC-19-RXN) molybdate transport via ABC system (periplasm) atp[c] + h2o[c] + mobd[p] --> adp[c] + h[c] + mobd[c] + pi[c] "Transport, Inner Membrane" ( b0763 and b0764 and b0765 and b0760 ) ((RIGHT REMOVE PROTON)) MOBDtex molybdate transport via diffusion (extracellular to periplasm) mobd[e] <==> mobd[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MOHMT (3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN) 3-methyl-2-oxobutanoate hydroxymethyltransferase [c] : 3mob + h2o + mlthf --> 2dhp + thf Cofactor and Prosthetic Group Biosynthesis 2.1.2.11 b0134 MPTG murein polymerizing transglycosylase (2) uaagmda[c] --> (2) h[c] + murein5p5p[p] + (2) udcpdp[c] Murein Biosynthesis ( b0149 or b3396 or b2519 ) (:UNMAPPED-CPDS) MPTG2 murein polymerizing transglycosylase 2 (three linked units) murein5p5p[p] + uaagmda[c] --> h[c] + murein5p5p5p[p] + udcpdp[c] Murein Biosynthesis ( b0149 or b2519 or b3396 ) (:UNMAPPED-CPDS) MSO3abcpp methanesulfonate transport via ABC system (periplasm) atp[c] + h2o[c] + mso3[p] --> adp[c] + h[c] + mso3[c] + pi[c] Update ( b0936 and b0933 and b0934 ) MSO3tex methanesulfonate transport via diffusion (extracellular to periplasm) mso3[e] <==> mso3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) MTAN (METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN) methylthioadenosine nucleosidase [c] : 5mta + h2o --> 5mtr + ade Arginine and Proline Metabolism 3.2.2.16 b0159 (:METACYC) MTHFC (METHENYLTHFCYCLOHYDRO-RXN) methenyltetrahydrofolate cyclohydrolase [c] : h2o + methf <==> 10fthf + h Folate Metabolism 3.5.4.9 b0529 ((RIGHT REMOVE PROTON)) MTHFD (METHYLENETHFDEHYDROG-NADP-RXN) methylenetetrahydrofolate dehydrogenase (NADP) [c] : mlthf + nadp <==> methf + nadph Folate Metabolism 1.5.1.5 b0529 MTHFR2 (1.5.1.20-RXN) "5,10-methylenetetrahydrofolate reductase (NADH)" [c] : (2) h + mlthf + nadh --> 5mthf + nad Folate Metabolism b3941 (:EXPANDED-RXN-MATCH) MTRI (5.3.1.23-RXN) 5-methylthioribose-1-phosphate isomerase [c] : 5mdr1p <==> 5mdru1p Arginine and Proline Metabolism 5.3.1.23 (:METACYC) MTRK (5-METHYLTHIORIBOSE-KINASE-RXN) 5-methylthioribose kinase [c] : 5mtr + atp --> 5mdr1p + adp + h Arginine and Proline Metabolism 2.7.1.100 (:METACYC (RIGHT REMOVE PROTON)) MTRPOX (RXN0-301) N-methyltryptophan oxidase [c] : Nmtrp + h2o + o2 --> fald + h2o2 + trp-L Update 1.5.3.2 b1059 N2Otex nitrious oxide transport via diffusion (extracellular to periplasm) n2o[e] <==> n2o[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) N2Otpp nitrious oxide transport (diffusion) n2o[p] <==> n2o[c] "Transport, Inner Membrane" (:DIFFUSION) NACODA N-acetylornithine deacetylase [c] : acg5sa + h2o --> ac + glu5sa Arginine and Proline Metabolism b3957 NACtex Nicotinic acid transport via diffusion (extracellular to periplasm) nac[e] <==> nac[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NACtpp Nicotinic acid uptake (periplasm) nac[p] --> nac[c] "Transport, Inner Membrane" (:DIFFUSION) NADDP (NADPYROPHOSPHAT-RXN) NAD diphosphatase [c] : h2o + nad --> amp + (2) h + nmn Cofactor and Prosthetic Group Biosynthesis 3.6.1.22 ( b2411 or b3996 ) ((RIGHT REMOVE PROTON)) NADH10 (NQOR-RXN) NADH dehydrogenase (menaquinone-8 & 0 protons) [c] : h + mqn8 + nadh --> mql8 + nad Oxidative Phosphorylation 1.6.5.3 b1109 (:EXPANDED-RXN-MATCH) NADH13pp (NADH-DEHYDROG-A-RXN) NADH dehydrogenase (ubiquinone-8 & 4 protons) (periplasm) (5) h[c] + nadh[c] + q8[c] --> (4) h[p] + nad[c] + q8h2[c] Oxidative Phosphorylation 1.6.5.3 ( b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288 ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) NADH14pp (NQOR-RXN) NADH dehydrogenase (menaquinone-8 & 4 protons) (periplasm) (5) h[c] + mqn8[c] + nadh[c] --> (4) h[p] + mql8[c] + nad[c] Oxidative Phosphorylation 1.6.5.3 ( b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288 ) (:EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) NADH15pp NADH dehydrogenase (demethylmenaquinone-8 & 4 protons) (periplasm) 2dmmq8[c] + (5) h[c] + nadh[c] --> 2dmmql8[c] + (4) h[p] + nad[c] Oxidative Phosphorylation 1.6.5.3 ( b2276 and b2277 and b2278 and b2279 and b2280 and b2281 and b2282 and b2283 and b2284 and b2285 and b2286 and b2287 and b2288 ) NADH5 (NADH-DEHYDROG-A-RXN) NADH dehydrogenase (ubiquinone-8 ) [c] : h + nadh + q8 --> nad + q8h2 Oxidative Phosphorylation 1.6.5.3 b1109 ((LEFT REMOVE PROTON)) NADH9 NADH dehydrogenase (demethylmenaquinone-8 & 0 protons) [c] : 2dmmq8 + h + nadh --> 2dmmql8 + nad Oxidative Phosphorylation 1.6.5.3 b1109 NADK (NAD-KIN-RXN) NAD kinase [c] : atp + nad --> adp + h + nadp Cofactor and Prosthetic Group Biosynthesis 2.7.1.23 b2615 ((RIGHT REMOVE PROTON)) NADN (NADNUCLEOSID-RXN) NAD nucleosidase [c] : h2o + nad --> adprib + h + ncam Update 3.2.2.5 ((RIGHT REMOVE PROTON)) NADPHQR2 NADPH Quinone Reductase (Ubiquinone-8) [c] : h + nadph + q8 --> nadp + q8h2 Update 1.6.99.6 b3028 NADPHQR3 (NQOR-RXN) NADPH Quinone Reductase (Menaquinone-8) [c] : h + mqn8 + nadph --> mql8 + nadp Update 1.6.99.6 b3028 (:EXPANDED-RXN-MATCH) NADPHQR4 NADPH Quinone Reductase (2-Demethylmenaquinone-8) [c] : 2dmmq8 + h + nadph --> 2dmmql8 + nadp Update 1.6.99.6 b3028 NADPPPS (NADPPHOSPHAT-RXN) NADP phosphatase [c] : h2o + nadp --> nad + pi Cofactor and Prosthetic Group Biosynthesis NADS1 (NAD-SYNTH-NH3-RXN) NAD synthase (nh3) [c] : atp + dnad + nh4 --> amp + h + nad + ppi Cofactor and Prosthetic Group Biosynthesis 6.3.1.5 b1740 ((LEFT SUBSTITUTE AMMONIA AMMONIUM) (RIGHT REMOVE PROTON)) NADTRHD (1.6.1.2-RXN PYRNUTRANSHYDROGEN-RXN) NAD transhydrogenase [c] : nad + nadph --> nadh + nadp Oxidative Phosphorylation ( ( b1602 and b1603 ) or b3962 ) NAMNPP nicotinic acid mononucleotide pyrophosphorylase [c] : atp + h2o + nac + prpp --> adp + nicrnt + pi + ppi Cofactor and Prosthetic Group Biosynthesis 2.4.2.11 b0931 NAt3_1p5pp (TRANS-RXN-129 TRANS-RXN-101 TRANS-RXN-130) sodium proton antiporter (H:NA is 1.5) (periplasm) (3) h[p] + (2) na1[c] --> (3) h[c] + (2) na1[p] "Transport, Inner Membrane" b1186 NAt3_2pp (TRANS-RXN-129 TRANS-RXN-101 TRANS-RXN-130) sodium proton antiporter (H:NA is 2) (periplasm) (2) h[p] + na1[c] --> (2) h[c] + na1[p] "Transport, Inner Membrane" b0019 NAt3pp (TRANS-RXN-129 TRANS-RXN-101 TRANS-RXN-130) sodium transport out via proton antiport (cytoplasm to periplasm) h[p] + na1[c] --> h[c] + na1[p] "Transport, Inner Membrane" ( b0842 or b1216 ) NAtex sodium transport via diffusion (extracellular to periplasm) na1[e] <==> na1[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NDPK1 (GDPKIN-RXN) nucleoside-diphosphate kinase (ATP:GDP) [c] : atp + gdp <==> adp + gtp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK2 (UDPKIN-RXN) nucleoside-diphosphate kinase (ATP:UDP) [c] : atp + udp <==> adp + utp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK3 (CDPKIN-RXN) nucleoside-diphosphate kinase (ATP:CDP) [c] : atp + cdp <==> adp + ctp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK4 (DTDPKIN-RXN) nucleoside-diphosphate kinase (ATP:dTDP) [c] : atp + dtdp <==> adp + dttp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK5 (DGDPKIN-RXN) nucleoside-diphosphate kinase (ATP:dGDP) [c] : atp + dgdp <==> adp + dgtp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK6 (DUDPKIN-RXN) nucleoside-diphosphate kinase (ATP:dUDP) [c] : atp + dudp <==> adp + dutp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK7 (DCDPKIN-RXN) nucleoside-diphosphate kinase (ATP:dCDP) [c] : atp + dcdp <==> adp + dctp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NDPK8 (DADPKIN-RXN) nucleoside-diphosphate kinase (ATP:dADP) [c] : atp + dadp <==> adp + datp Nucleotide Salvage Pathway 2.7.4.6 ( b2518 or b0474 ) NH4tex ammonia transport via diffusion (extracellular to periplasm) nh4[e] <==> nh4[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NH4tpp (TRANS-RXN-149) ammonia reversible transport (periplasm) nh4[p] <==> nh4[c] "Transport, Inner Membrane" b0451 ((LEFT SUBSTITUTE AMMONIA AMMONIUM) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) NHFRBO NADH:flavorubredoxin oxidoreductase [c] : h + nadh + (2) no --> h2o + n2o + nad Update ( b2710 and b2711 ) NI2abcpp Nickle (Ni+2) ABC transporter (periplasm) atp[c] + h2o[c] + ni2[c] --> adp[c] + h[c] + ni2[p] + pi[c] "Transport, Inner Membrane" b3469 NI2tex nickel transport via diffusion (extracellular to periplasm) ni2[e] <==> ni2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NI2tpp (TRANS-RXN-141B) nickel transport in/out via permease (no H+) ni2[p] <==> ni2[c] "Transport, Inner Membrane" b3816 NI2uabcpp (ABC-20-RXN) "nickel transport via ABC system (uptake, periplasm)" atp[c] + h2o[c] + ni2[p] --> adp[c] + h[c] + ni2[c] + pi[c] "Transport, Inner Membrane" ( ( b3476 and b3477 and b3478 and b3479 and b3480 ) or b4242 ) ((RIGHT REMOVE PROTON)) NMNAT (2.7.7.1-RXN) nicotinamide-nucleotide adenylyltransferase [c] : atp + h + nmn --> nad + ppi Cofactor and Prosthetic Group Biosynthesis 2.7.7.1 ( b4390 or b0639 ) ((LEFT REMOVE PROTON)) NMNDA (NMNAMIDOHYDRO-RXN) nicotinamide-nucleotide amidase [c] : h2o + nmn --> nh4 + nicrnt Cofactor and Prosthetic Group Biosynthesis 3.5.1.42 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) NMNN (NMNNUCLEOSID-RXN) NMN nucleosidase [c] : h2o + nmn --> h + ncam + r5p Cofactor and Prosthetic Group Biosynthesis 3.2.2.14 ((RIGHT REMOVE PROTON)) NMNPtpp (TRANS-RXN-9) NMN permease (periplasm) nmn[p] --> nmn[c] "Transport, Inner Membrane" b0751 NMNt7pp NMN transport via NMN glycohydrolase (periplasm) h2o[c] + nmn[p] --> h[c] + ncam[c] + r5p[c] "Transport, Inner Membrane" 3.2.2.14 NMNtex NMN transport via diffusion (extracellular to periplasm) nmn[e] <==> nmn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NNAM (NICOTINAMID-RXN) nicotinamidase [c] : h2o + ncam --> nac + nh4 Cofactor and Prosthetic Group Biosynthesis 3.5.1.19 b1768 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) NNATr (NICONUCADENYLYLTRAN-RXN) nicotinate-nucleotide adenylyltransferase [c] : atp + h + nicrnt <==> dnad + ppi Update 2.7.7.18 b0639 ((LEFT REMOVE PROTON)) NNDMBRT (DMBPPRIBOSYLTRANS-RXN) Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase [c] : dmbzid + nicrnt --> 5prdmbz + h + nac Cofactor and Prosthetic Group Biosynthesis b1991 ((RIGHT REMOVE PROTON)) NNDPR (QUINOPRIBOTRANS-RXN) nicotinate-nucleotide diphosphorylase (carboxylating) [c] : (2) h + prpp + quln --> co2 + nicrnt + ppi Cofactor and Prosthetic Group Biosynthesis 2.4.2.19 b0109 ((LEFT REMOVE PROTON)) NO2t2rpp (TRANS-RXN-137) "nitrite transport in via proton symport, reversible (periplasm)" h[p] + no2[p] <==> h[c] + no2[c] "Transport, Inner Membrane" ( b1223 or b3367 ) NO2tex nitrite transport via diffusion (extracellular to periplasm) no2[e] <==> no2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NO3R1bpp Nitrate reductase (Ubiquinol-8) no3[p] + q8h2[c] --> h2o[p] + no2[p] + q8[c] Update 1.7.99.4 ( ( b2203 and b2206 ) and b2202 and b2205 and b2204 ) NO3R1pp Nitrate reductase (Ubiquinol-8) (periplasm) (2) h[c] + no3[c] + q8h2[c] --> (2) h[p] + h2o[c] + no2[c] + q8[c] Oxidative Phosphorylation 1.7.99.4 ( ( b1224 and b1225 and b1226 and b1227 ) or ( b1465 and b1466 and b1467 and b1468 ) ) NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) mql8[c] + no3[p] --> h2o[p] + mqn8[c] + no2[p] Update 1.7.99.4 ( ( b2203 and b2206 ) and b2202 ) NO3R2pp (RXN0-3501) Nitrate reductase (Menaquinol-8) (periplasm) (2) h[c] + mql8[c] + no3[c] --> (2) h[p] + h2o[c] + mqn8[c] + no2[c] Oxidative Phosphorylation ( ( b1224 and b1225 and b1226 and b1227 ) or ( b1465 and b1466 and b1467 and b1468 ) ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) NO3t7pp nitrate transport in via nitrite antiport (periplasm) no2[c] + no3[p] --> no2[p] + no3[c] "Transport, Inner Membrane" ( b1223 or b1469 ) NO3tex nitrate transport via diffusion (extracellular to periplasm) no3[e] <==> no3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NODOx (R621-RXN) nitric oxide dioxygenase [c] : nadh + (2) no + (2) o2 --> h + nad + (2) no3 Update 1.14.12.17 b2552 (:EXPANDED-RXN-MATCH) NODOy (R621-RXN) nitric oxide dioxygenase [c] : nadph + (2) no + (2) o2 --> h + nadp + (2) no3 Update 1.14.12.17 b2552 (:EXPANDED-RXN-MATCH) NOtex nitric oxide transport via diffusion (extracellular to periplasm) no[e] <==> no[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) NOtpp NO transport (diffusion) no[p] <==> no[c] "Transport, Inner Membrane" (:DIFFUSION) NPHS (NAPHTHOATE-SYN-RXN) naphthoate synthase [c] : sbzcoa --> coa + dhna Cofactor and Prosthetic Group Biosynthesis 4.1.3.36 b2262 NTD1 (NUCLEOTIDASE-RXN) 5'-nucleotidase (dUMP) [c] : dump + h2o --> duri + pi Nucleotide Salvage Pathway 3.1.3.5 ( b2291 or b4374 or b2744 ) (:METACYC :EXPANDED-RXN-MATCH) NTD10 (XMPXAN-RXN) 5'-nucleotidase (XMP) [c] : h2o + xmp --> pi + xtsn Update 3.1.3.5 b2744 (:METACYC) NTD10pp 5'-nucleotidase (XMP) [p] : h2o + xmp --> pi + xtsn Update 3.1.3.5 ( b4055 or b0480 ) NTD11 (|5'-NUCLEOTID-RXN|) 5'-nucleotidase (IMP) [c] : h2o + imp --> ins + pi Update 3.1.3.5 b2744 (:EXPANDED-RXN-MATCH) NTD11pp 5'-nucleotidase (IMP) [p] : h2o + imp --> ins + pi Update 3.1.3.5 ( b0480 or b4055 ) NTD12 5'-nucleotidase (dIMP) [c] : dimp + h2o --> din + pi Update 3.1.3.5 ( b2291 or b2744 ) NTD12pp 5'-nucleotidase (dIMP) (periplasm) [p] : dimp + h2o --> din + pi Update 3.1.3.5 ( b0480 or b4055 ) NTD1pp 5'-nucleotidase (dUMP) [p] : dump + h2o --> duri + pi Update 3.1.3.5 ( b4055 or b0480 ) NTD2 (|5'-NUCLEOTID-RXN|) 5'-nucleotidase (UMP) [c] : h2o + ump --> pi + uri Nucleotide Salvage Pathway 3.1.3.5 ( b4374 or b2744 ) (:EXPANDED-RXN-MATCH) NTD2pp 5'-nucleotidase (UMP) [p] : h2o + ump --> pi + uri Update 3.1.3.5 ( b0480 or b4055 ) NTD3 (NUCLEOTIDASE-RXN) 5'-nucleotidase (dCMP) [c] : dcmp + h2o --> dcyt + pi Nucleotide Salvage Pathway 3.1.3.5 ( b2291 or b2744 ) (:METACYC :EXPANDED-RXN-MATCH) NTD3pp 5'-nucleotidase (dCMP) [p] : dcmp + h2o --> dcyt + pi Update 3.1.3.5 ( b4055 or b0480 ) NTD4 (|5'-NUCLEOTID-RXN|) 5'-nucleotidase (CMP) [c] : cmp + h2o --> cytd + pi Update 3.1.3.5 b2744 (:EXPANDED-RXN-MATCH) NTD4pp 5'-nucleotidase (CMP) [p] : cmp + h2o --> cytd + pi Update 3.1.3.5 ( b0480 or b4055 ) NTD5 (|THYMIDYLATE-5'-PHOSPHATASE-RXN|) 5'-nucleotidase (dTMP) [c] : dtmp + h2o --> pi + thymd Nucleotide Salvage Pathway 3.1.3.5 ( b2291 or b4374 or b2744 ) (:METACYC) NTD5pp 5'-nucleotidase (dTMP) [p] : dtmp + h2o --> pi + thymd Update 3.1.3.5 ( b4055 or b0480 ) NTD6 (NUCLEOTIDASE-RXN) 5'-nucleotidase (dAMP) [c] : damp + h2o --> dad-2 + pi Nucleotide Salvage Pathway 3.1.3.5 ( b2291 or b2744 ) (:METACYC :EXPANDED-RXN-MATCH) NTD6pp 5'-nucleotidase (dAMP) [p] : damp + h2o --> dad-2 + pi Update 3.1.3.5 ( b0480 or b4055 ) NTD7 (|5'-NUCLEOTID-RXN|) 5'-nucleotidase (AMP) [c] : amp + h2o --> adn + pi Nucleotide Salvage Pathway 3.1.3.5 b2744 (:EXPANDED-RXN-MATCH) NTD7pp 5'-nucleotidase (AMP) [p] : amp + h2o --> adn + pi Update 3.1.3.5 ( b4055 or b0480 ) NTD8 (NUCLEOTIDASE-RXN) 5'-nucleotidase (dGMP) [c] : dgmp + h2o --> dgsn + pi Nucleotide Salvage Pathway 3.1.3.5 ( b2291 or b2744 ) (:METACYC :EXPANDED-RXN-MATCH) NTD8pp 5'-nucleotidase (dGMP) [p] : dgmp + h2o --> dgsn + pi Update 3.1.3.5 ( b4055 or b0480 ) NTD9 (|5'-NUCLEOTID-RXN|) 5'-nucleotidase (GMP) [c] : gmp + h2o --> gsn + pi Nucleotide Salvage Pathway 3.1.3.5 b2744 (:EXPANDED-RXN-MATCH) NTD9pp 5'-nucleotidase (GMP) [p] : gmp + h2o --> gsn + pi Update 3.1.3.5 ( b0480 or b4055 ) NTP1 (RXN0-1061 3.6.3.1-RXN 3.6.3.15-RXN 3.6.3.46-RXN 3.6.3.49-RXN 3.6.3.50-RXN 3.6.3.51-RXN 3.6.3.52-RXN 3.6.4.1-RXN 3.6.4.2-RXN 3.6.4.3-RXN 3.6.4.4-RXN 3.6.4.5-RXN 3.6.4.6-RXN 3.6.4.7-RXN 3.6.4.8-RXN 3.6.4.9-RXN 3.6.4.11-RXN ADENOSINETRIPHOSPHATASE-RXN) nucleoside-triphosphatase (ATP) [c] : atp + h2o --> adp + h + pi Update 3.6.1.15 ( b4161 or b0650 ) (:METACYC (RIGHT REMOVE PROTON)) NTP10 (RXN0-5073) nucleoside-triphosphatase (ITP) [c] : h2o + itp --> h + idp + pi Update 3.6.1.15 ( b4161 or b4394 ) ((RIGHT REMOVE PROTON)) NTP11 nucleoside-triphosphatase (dITP) [c] : ditp + h2o --> didp + h + pi Update 3.6.1.15 b4394 NTP12 (RXN0-5074) nucleoside-triphosphatase (XTP) [c] : h2o + xtp --> h + pi + xdp Update 3.6.1.15 b4394 ((RIGHT REMOVE PROTON)) NTP3 (RXN0-1021) nucleoside-triphosphatase (GTP) [c] : gtp + h2o --> gdp + h + pi Update 3.6.1.15 b4161 ((RIGHT REMOVE PROTON)) NTP3pp nucleoside-triphosphatase (GTP) (periplasm) [p] : gtp + h2o --> gdp + h + pi Update 3.6.1.15 b0980 NTP5 nucleoside-triphosphatase (CTP) [c] : ctp + h2o --> cdp + h + pi Update 3.6.1.15 b4161 NTPP1 (RXN0-385) Nucleoside triphosphate pyrophosphorylase (dgtp) [c] : dgtp + h2o --> dgmp + h + ppi Nucleotide Salvage Pathway ( b0099 or b2781 ) ((RIGHT REMOVE PROTON)) NTPP10 (RXN0-1602) Nucleoside triphosphate pyrophosphorylase (ditp) [c] : ditp + h2o --> dimp + h + ppi Update 3.6.1.19 b2954 ((RIGHT REMOVE PROTON)) NTPP11 (RXN0-1603) Nucleoside triphosphate pyrophosphorylase (xtp) [c] : h2o + xtp --> h + ppi + xmp Update 3.6.1.19 b2954 ((RIGHT REMOVE PROTON)) NTPP2 Nucleoside triphosphate pyrophosphorylase (gtp) [c] : gtp + h2o --> gmp + h + ppi Nucleotide Salvage Pathway ( b0099 or b2781 ) NTPP3 (DCTP-PYROPHOSPHATASE-RXN) Nucleoside triphosphate pyrophosphorylase (dctp) [c] : dctp + h2o --> dcmp + h + ppi Nucleotide Salvage Pathway ( b2781 or b1759 ) ((RIGHT REMOVE PROTON)) NTPP4 (RXN0-383) Nucleoside triphosphate pyrophosphorylase (ctp) [c] : ctp + h2o --> cmp + h + ppi Nucleotide Salvage Pathway ( b1759 or b2781 ) ((RIGHT REMOVE PROTON)) NTPP5 (RXN0-384) Nucleoside triphosphate pyrophosphorylase (datp) [c] : datp + h2o --> damp + h + ppi Nucleotide Salvage Pathway b2781 ((RIGHT REMOVE PROTON)) NTPP6 (ATP-PYROPHOSPHATASE-RXN) Nucleoside triphosphate pyrophosphorylase (atp) [c] : atp + h2o --> amp + h + ppi Nucleotide Salvage Pathway b2781 (:METACYC (RIGHT REMOVE PROTON)) NTPP7 (RXN0-5107) Nucleoside triphosphate pyrophosphorylase (dttp) [c] : dttp + h2o --> dtmp + h + ppi Nucleotide Salvage Pathway b2781 ((RIGHT REMOVE PROTON)) NTPP8 Nucleoside triphosphate pyrophosphorylase (utp) [c] : h2o + utp --> h + ppi + ump Nucleotide Salvage Pathway b2781 NTPP9 Nucleoside triphosphate pyrophosphorylase (itp) [c] : h2o + itp --> h + imp + ppi Update 3.6.1.19 b2954 NTPTP1 (DGTPTRIPHYDRO-RXN) Nucleoside triphosphate tripolyhydrolase [c] : dgtp + h2o --> dgsn + pppi Nucleotide Salvage Pathway 3.1.5.1 b0160 NTPTP2 Nucleoside triphosphate tripolyhydrolase [c] : gtp + h2o --> gsn + pppi Nucleotide Salvage Pathway 3.1.5.1 b0160 NTRIR2x nitrite Reductase (NADH) [c] : (5) h + (3) nadh + no2 --> (2) h2o + (3) nad + nh4 Oxidative Phosphorylation ( b3365 and b3366 ) NTRIR3pp "nitrite Reductase (Ubiquinole-8, periplasm)" (2) h[p] + no2[p] + (3) q8h2[c] --> (2) h2o[p] + nh4[p] + (3) q8[c] Update ( b4070 and b4071 and b4072 and b4073 ) NTRIR4pp "nitrite Reductase (Menaquinole-8, periplasm)" (2) h[p] + (3) mql8[c] + no2[p] --> (2) h2o[p] + (3) mqn8[c] + nh4[p] Update ( b4070 and b4071 and b4072 and b4073 ) O16A4COLIPAtex O16 antigen (x4) core oligosaccharide lipid A transport (periplasm to extracellular) o16a4colipa[p] --> o16a4colipa[e] Lipopolysaccharide Biosynthesis / Recycling (:UNMAPPED-CPDS) O16A4Lpp O16 anitgen (x4) ligase (periplasm) [p] : colipa + o16a4und --> h + o16a4colipa + udcpdp Lipopolysaccharide Biosynthesis / Recycling b3622 (:UNMAPPED-CPDS) O16AP1pp O16 antigen polymerase (periplasm) [p] : (2) o16aund --> h + o16a2und + udcpdp Lipopolysaccharide Biosynthesis / Recycling ( b2035 and b2027 ) (:UNMAPPED-CPDS) O16AP2pp O16 antigen polymerase (periplasm) [p] : o16a2und + o16aund --> h + o16a3und + udcpdp Lipopolysaccharide Biosynthesis / Recycling ( b2035 and b2027 ) (:UNMAPPED-CPDS) O16AP3pp O16 antigen polymerase (periplasm) [p] : o16a3und + o16aund --> h + o16a4und + udcpdp Lipopolysaccharide Biosynthesis / Recycling ( b2035 and b2027 ) (:UNMAPPED-CPDS) O16AT rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) [c] : accoa + ragund --> aragund + coa Lipopolysaccharide Biosynthesis / Recycling b2033 (:UNMAPPED-CPDS) O16AUNDtpp "O16 antigen (flippase, cytoplasm to periplasm)" o16aund[c] --> o16aund[p] Lipopolysaccharide Biosynthesis / Recycling b2037 (:UNMAPPED-CPDS) O16GALFT galactofuranosyltransferase (LPS O16 antigen biosynthesis) [c] : garagund + udpgalfur --> gfgaragund + h + udp Lipopolysaccharide Biosynthesis / Recycling b2034 (:UNMAPPED-CPDS) O16GLCT1 glucosyltransferase I (LPS O16 antigen biosynthesis) [c] : aragund + udpg --> garagund + h + udp Lipopolysaccharide Biosynthesis / Recycling b2032 (:UNMAPPED-CPDS) O16GLCT2 glucosyltransferase II (LPS O16 antigen biosynthesis) [c] : gfgaragund + udpg --> h + o16aund + udp Lipopolysaccharide Biosynthesis / Recycling (:UNMAPPED-CPDS) O2Stex superoxide anion transport via diffusion (extracellular to periplasm) o2s[e] <==> o2s[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) O2tex oxygen transport via diffusion (extracellular to periplasm) o2[e] <==> o2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) O2tpp o2 transport via diffusion (periplasm) o2[p] <==> o2[c] "Transport, Inner Membrane" (:DIFFUSION) OAADC (OXALODECARB-RXN) oxaloacetate decarboxylase [c] : h + oaa --> co2 + pyr Update 4.1.1.3 b1850 ((LEFT REMOVE PROTON)) OBTFL (KETOBUTFORMLY-RXN) 2-Oxobutanoate formate lyase [c] : 2obut + coa --> for + ppcoa Alternate Carbon Metabolism ( b3114 or ( b0902 and b0903 ) ) OCBT (ORNCARBAMTRANSFER-RXN) ornithine carbamoyltransferase [c] : cbp + orn <==> citr-L + h + pi Arginine and Proline Metabolism 2.1.3.3 ( b4254 or b0273 ) ((RIGHT REMOVE PROTON)) OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) ocdca[e] --> ocdca[p] "Transport, Outer Membrane" b2344 (:DIFFUSION) OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) ocdcea[e] --> ocdcea[p] "Transport, Outer Membrane" b2344 (:DIFFUSION) OCTAtex Octanoate transport via diffusion (extracellular to periplasm) octa[e] <==> octa[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) OCTDPS (OPPSYN-RXN) Octaprenyl pyrophosphate synthase [c] : frdp + (5) ipdp --> octdp + (5) ppi Cofactor and Prosthetic Group Biosynthesis b3187 (:EXPANDED-RXN-MATCH) ODECOAI Octadecenoyl-coa cis-trans isomerization [c] : odecoa --> od2coa Membrane Lipid Metabolism 5.3.3.8 b3846 OHPBAT (PSERTRANSAMPYR-RXN) O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase [c] : glu-L + ohpb <==> akg + phthr Cofactor and Prosthetic Group Biosynthesis 2.6.1.52 b0907 OHPHM (2-OCTAPRENYL-6-OHPHENOL-METHY-RXN) 2-octaprenyl-6-hydroxyphenol methylase [c] : 2ohph + amet --> 2omph + ahcys + h Cofactor and Prosthetic Group Biosynthesis b2232 ((RIGHT REMOVE PROTON)) OMBZLM (2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN) 2-Octaprenyl-6-methoxy-benzoquinol methylase [c] : 2ombzl + amet --> 2ommbl + ahcys + h Cofactor and Prosthetic Group Biosynthesis b3833 ((RIGHT REMOVE PROTON)) OMCDC (RXN-7800) 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation [c] : 3c4mop + h --> 4mop + co2 "Valine, Leucine, and Isoleucine Metabolism" b0073 ((LEFT REMOVE PROTON)) OMMBLHX "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" [c] : 2ommbl + (0.5) o2 --> 2omhmbl Cofactor and Prosthetic Group Biosynthesis b0662 OMMBLHX2 "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (anaerobic)" [c] : 2ommbl + h2o + nad --> 2omhmbl + h + nadh Update OMPDC (OROTPDECARB-RXN) orotidine-5'-phosphate decarboxylase [c] : h + orot5p --> co2 + ump Purine and Pyrimidine Biosynthesis 4.1.1.23 b1281 ((LEFT REMOVE PROTON)) OMPHHX 2-octaprenyl-6-methoxyphenol hydroxylase [c] : 2omph + (0.5) o2 --> 2ombzl Cofactor and Prosthetic Group Biosynthesis b2907 OMPHHX2 2-octaprenyl-6-methoxyphenol hydroxylase (anaerobic) [c] : 2omph + h2o + nad --> 2ombzl + h + nadh Update OP4ENH (2-OXOPENT-4-ENOATE-HYDRATASE-RXN) 2-oxopent-4-enoate hydratase [c] : h2o + op4en --> 4h2opntn Alternate Carbon Metabolism 4.2.1.80 b0350 OPHBDC (3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN) Octaprenyl-hydroxybenzoate decarboxylase [c] : 3ophb + h --> 2oph + co2 Cofactor and Prosthetic Group Biosynthesis ( b3843 or b2311 ) ((LEFT REMOVE PROTON)) OPHHX (2-OCTAPRENYLPHENOL-HYDROX-RXN) 2-Octaprenylphenol hydroxylase [c] : 2oph + (0.5) o2 --> 2ohph Cofactor and Prosthetic Group Biosynthesis b3835 OPHHX2 2-Octaprenylphenol hydroxylase (anaerobic) [c] : 2oph + h2o + nad --> 2ohph + h + nadh Update ORNDC (ORNDECARBOX-RXN) Ornithine Decarboxylase [c] : h + orn --> co2 + ptrc Arginine and Proline Metabolism 4.1.1.17 ( b2965 or b0693 ) ((LEFT REMOVE PROTON)) ORNabcpp (ABC-37-RXN) ornithine transport via ABC system (periplasm) atp[c] + h2o[c] + orn[p] --> adp[c] + h[c] + orn[c] + pi[c] "Transport, Inner Membrane" ( b2310 and b2307 and b2306 and b2308 ) ((RIGHT REMOVE PROTON)) ORNtex ornithine transport via diffusion (extracellular to periplasm) orn[e] <==> orn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) OROTt2_2pp Orotate transport via proton symport (2 H) (periplasm) (2) h[p] + orot[p] --> (2) h[c] + orot[c] "Transport, Inner Membrane" b3528 OROTtex Orotate transport via diffusion (extracellular to periplasm) orot[e] <==> orot[p] "Transport, Outer Membrane Porin" ( b2215 or b1377 or b0929 or b0241 ) (:DIFFUSION) ORPT (OROPRIBTRANS-RXN) orotate phosphoribosyltransferase [c] : orot5p + ppi <==> orot + prpp Purine and Pyrimidine Biosynthesis 2.4.2.10 b3642 OXAMTC (OXAMATE-CARBAMOYLTRANSFERASE-RXN) oxamate transcarbamoylase [c] : oxur + pi --> cbp + oxam Update 2.1.3.5 (:METACYC) OXGDC2 (2-OXOGLUT-DECARBOX-RXN) 2-oxoglutarate decarboxylase [c] : akg + h + thmpp --> co2 + ssaltpp Cofactor and Prosthetic Group Biosynthesis 4.1.1.71 b2264 ((LEFT REMOVE PROTON)) P5CD (PYRROLINECARBDEHYDROG-RXN) 1-pyrroline-5-carboxylate dehydrogenase [c] : 1pyr5c + (2) h2o + nad --> glu-L + h + nadh Arginine and Proline Metabolism 1.5.1.12 b1014 ((RIGHT REMOVE PROTON)) P5CR (PYRROLINECARBREDUCT-RXN) pyrroline-5-carboxylate reductase [c] : 1pyr5c + (2) h + nadph --> nadp + pro-L Arginine and Proline Metabolism 1.5.1.2 b0386 (:EXPANDED-RXN-MATCH) PA120abcpp "phosphatidate transport via ABC system (n-C12:0, periplasm)" atp[c] + h2o[c] + pa120[c] --> adp[c] + h[c] + pa120[p] + pi[c] "Transport, Inner Membrane" b0914 PA140abcpp "phosphatidate transport via ABC system (n-C14:0, periplasm)" atp[c] + h2o[c] + pa140[c] --> adp[c] + h[c] + pa140[p] + pi[c] "Transport, Inner Membrane" b0914 PA141abcpp "phosphatidate transport via ABC system (n-C14:1, periplasm)" atp[c] + h2o[c] + pa141[c] --> adp[c] + h[c] + pa141[p] + pi[c] "Transport, Inner Membrane" b0914 PA160abcpp "phosphatidate transport via ABC system (n-C16:0, periplasm)" atp[c] + h2o[c] + pa160[c] --> adp[c] + h[c] + pa160[p] + pi[c] "Transport, Inner Membrane" b0914 PA161abcpp "phosphatidate transport via ABC system (n-C16:1, periplasm)" atp[c] + h2o[c] + pa161[c] --> adp[c] + h[c] + pa161[p] + pi[c] "Transport, Inner Membrane" b0914 PA180abcpp "phosphatidate transport via ABC system (n-C18:0, periplasm)" atp[c] + h2o[c] + pa180[c] --> adp[c] + h[c] + pa180[p] + pi[c] "Transport, Inner Membrane" b0914 PA181abcpp "phosphatidate transport via ABC system (n-C18:1, periplasm)" atp[c] + h2o[c] + pa181[c] --> adp[c] + h[c] + pa181[p] + pi[c] "Transport, Inner Membrane" b0914 PACALDt2rpp phenylacetaldehyde reversible transport via proton symport (periplasm) h[p] + pacald[p] <==> h[c] + pacald[c] Update PACALDtex phenethylacetaldehyde transport via diffusion (extracellular to periplasm) pacald[e] <==> pacald[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PACCOAL (PHENYLACETATE--COA-LIGASE-RXN) phenylacetate-CoA ligase [c] : atp + coa + pac --> amp + phaccoa + ppi Alternate Carbon Metabolism 6.2.1.30 b1398 PANTS (PANTOATE-BETA-ALANINE-LIG-RXN) pantothenate synthase [c] : ala-B + atp + pant-R --> amp + h + pnto-R + ppi Cofactor and Prosthetic Group Biosynthesis 6.3.2.1 b0133 ((RIGHT REMOVE PROTON)) PAPA120 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C12:0) [c] : h2o + pa120 --> 12dgr120 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA120pp "Phosphatidate phosphatase (periplasmic, n-C12:0)" [p] : h2o + pa120 --> 12dgr120 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPA140 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C14:0) [c] : h2o + pa140 --> 12dgr140 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA140pp "Phosphatidate phosphatase (periplasmic, n-C14:0)" [p] : h2o + pa140 --> 12dgr140 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPA141 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C14:1) [c] : h2o + pa141 --> 12dgr141 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA141pp "Phosphatidate phosphatase (periplasmic, n-C14:1)" [p] : h2o + pa141 --> 12dgr141 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPA160 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C16:0) [c] : h2o + pa160 --> 12dgr160 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA160pp "Phosphatidate phosphatase (periplasmic, n-C16:0)" [p] : h2o + pa160 --> 12dgr160 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPA161 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C16:1) [c] : h2o + pa161 --> 12dgr161 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA161pp "Phosphatidate phosphatase (periplasmic, n-C16:1)" [p] : h2o + pa161 --> 12dgr161 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPA180 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C18:0) [c] : h2o + pa180 --> 12dgr180 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA180pp "Phosphatidate phosphatase (periplasmic, n-C18:0)" [p] : h2o + pa180 --> 12dgr180 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPA181 (PHOSPHATIDATE-PHOSPHATASE-RXN) Phosphatidate phosphatase (n-C18:1) [c] : h2o + pa181 --> 12dgr181 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 (:METACYC) PAPA181pp "Phosphatidate phosphatase (periplasmic, n-C18:1)" [p] : h2o + pa181 --> 12dgr181 + pi Glycerophospholipid Metabolism 3.1.3.4 b1278 PAPPT3 (PHOSNACMURPENTATRANS-RXN) "phospho-N-acetylmuramoyl-pentapeptide-transferase (meso-2,6-diaminopimelate)" [c] : udcpp + ugmda --> uagmda + ump Cell Envelope Biosynthesis 2.7.8.13 b0087 (:EXPANDED-RXN-MATCH) PAPSR (1.8.4.8-RXN) phosphoadenylyl-sulfate reductase (thioredoxin) [c] : paps + trdrd --> (2) h + pap + so3 + trdox Cysteine Metabolism 1.8.4.8 b2762 (:EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) PAPSR2 (PAPSREDGLUT-RXN) phosphoadenylyl-sulfate reductase (glutaredoxin) [c] : grxrd + paps --> grxox + (2) h + pap + so3 Update 1.8.4.8 b2762 (:EXPANDED-RXN-MATCH) PDE1 (RXN0-5038) "3',5'-cyclic-nucleotide phosphodiesterase" [c] : camp + h2o --> amp + h Update 3.1.4.17 b1489 ((RIGHT REMOVE PROTON)) PDH (PYRUVDEH-RXN) pyruvate dehydrogenase [c] : coa + nad + pyr --> accoa + co2 + nadh Glycolysis/Gluconeogenesis ( b0114 and b0115 and b0116 ) PDX5PO2 pyridoxine 5'-phosphate oxidase (anaerboic [c] : nad + pdx5p --> h + nadh + pydx5p Update PDX5POi (PNPOXI-RXN) pyridoxine 5'-phosphate oxidase [c] : o2 + pdx5p --> h2o2 + pydx5p Cofactor and Prosthetic Group Biosynthesis 1.4.3.5 b1638 PDX5PS Pyridoxine 5'-phosphate synthase [c] : dxyl5p + nad + phthr --> co2 + h + (2) h2o + nadh + pdx5p + pi Cofactor and Prosthetic Group Biosynthesis ( b0052 and b2564 ) PDXPP Pyridoxine 5-phosphate phosphatase [c] : h2o + pdx5p --> pi + pydxn Cofactor and Prosthetic Group Biosynthesis PE120abcpp "phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)" atp[c] + h2o[c] + pe120[c] --> adp[c] + h[c] + pe120[p] + pi[c] "Transport, Inner Membrane" b0914 PE140abcpp "phosphatidylethanolamine transport via ABC system (n-C14:0, periplasm)" atp[c] + h2o[c] + pe140[c] --> adp[c] + h[c] + pe140[p] + pi[c] "Transport, Inner Membrane" b0914 PE141abcpp "phosphatidylethanolamine transport via ABC system (n-C14:1, periplasm)" atp[c] + h2o[c] + pe141[c] --> adp[c] + h[c] + pe141[p] + pi[c] "Transport, Inner Membrane" b0914 PE160abcpp "phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)" atp[c] + h2o[c] + pe160[c] --> adp[c] + h[c] + pe160[p] + pi[c] "Transport, Inner Membrane" b0914 PE161abcpp "phosphatidylethanolamine transport via ABC system (n-C16:1, periplasm)" atp[c] + h2o[c] + pe161[c] --> adp[c] + h[c] + pe161[p] + pi[c] "Transport, Inner Membrane" b0914 PE180abcpp "phosphatidylethanolamine transport via ABC system (n-C18:0, periplasm)" atp[c] + h2o[c] + pe180[c] --> adp[c] + h[c] + pe180[p] + pi[c] "Transport, Inner Membrane" b0914 PE181abcpp "phosphatidylethanolamine transport via ABC system (n-C18:1, periplasm)" atp[c] + h2o[c] + pe181[c] --> adp[c] + h[c] + pe181[p] + pi[c] "Transport, Inner Membrane" b0914 PEAMNOpp Phenethylamine oxidase [p] : h2o + o2 + peamn --> h2o2 + nh4 + pacald Update 1.4.3.6 b1386 PEAMNtex phenethylamine transport via diffusion (extracellular to periplasm) peamn[e] <==> peamn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PERD (ERYTHRON4PDEHYDROG-RXN) Erythronate 4-phosphate (4per) dehydrogenase [c] : 4per + nad <==> h + nadh + ohpb Cofactor and Prosthetic Group Biosynthesis b2320 ((RIGHT REMOVE PROTON)) PETNT161pp phosphoethanolamine transferase (c-C16:1) [p] : lipa + pe161 --> 12dgr161 + enlipa Lipopolysaccharide Biosynthesis / Recycling b3546 PETNT181pp phosphoethanolamine transferase (c-C16:1) [p] : lipa + pe181 --> 12dgr181 + enlipa Lipopolysaccharide Biosynthesis / Recycling b3546 PFK (6PFRUCTPHOS-RXN) phosphofructokinase [c] : atp + f6p --> adp + fdp + h Glycolysis/Gluconeogenesis 2.7.1.11 ( b3916 or b1723 ) ((RIGHT REMOVE PROTON)) PFK_2 (TAGAKIN-RXN) Phosphofructokinase [c] : atp + tag6p-D --> adp + h + tagdp-D Alternate Carbon Metabolism 2.7.1.11 b3916 ((RIGHT REMOVE PROTON)) PFL (PYRUVFORMLY-RXN) pyruvate formate lyase [c] : coa + pyr --> accoa + for Pyruvate Metabolism ( b3114 or ( b0902 and b0903 ) or ( b3951 and b3952 ) ) PG120abcpp "phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)" atp[c] + h2o[c] + pg120[c] --> adp[c] + h[c] + pg120[p] + pi[c] "Transport, Inner Membrane" b0914 PG140abcpp "phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)" atp[c] + h2o[c] + pg140[c] --> adp[c] + h[c] + pg140[p] + pi[c] "Transport, Inner Membrane" b0914 PG141abcpp "phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)" atp[c] + h2o[c] + pg141[c] --> adp[c] + h[c] + pg141[p] + pi[c] "Transport, Inner Membrane" b0914 PG160abcpp "phosphatidylglycerol transport via ABC system (n-C16:0, periplasm)" atp[c] + h2o[c] + pg160[c] --> adp[c] + h[c] + pg160[p] + pi[c] "Transport, Inner Membrane" b0914 PG161abcpp "phosphatidylglycerol transport via ABC system (n-C16:1, periplasm)" atp[c] + h2o[c] + pg161[c] --> adp[c] + h[c] + pg161[p] + pi[c] "Transport, Inner Membrane" b0914 PG180abcpp "phosphatidylglycerol transport via ABC system (n-C18:0, periplasm)" atp[c] + h2o[c] + pg180[c] --> adp[c] + h[c] + pg180[p] + pi[c] "Transport, Inner Membrane" b0914 PG181abcpp "phosphatidylglycerol transport via ABC system (n-C18:1, periplasm)" atp[c] + h2o[c] + pg181[c] --> adp[c] + h[c] + pg181[p] + pi[c] "Transport, Inner Membrane" b0914 PGAMT (PHOSGLUCOSAMINEMUT-RXN) phosphoglucosamine mutase [c] : gam1p <==> gam6p Cell Envelope Biosynthesis 5.4.2.10 b3176 PGCD (PGLYCDEHYDROG-RXN) phosphoglycerate dehydrogenase [c] : 3pg + nad --> 3php + h + nadh Glycine and Serine Metabolism 1.1.1.95 b2913 ((RIGHT REMOVE PROTON)) PGI (PGLUCISOM-RXN) glucose-6-phosphate isomerase [c] : g6p <==> f6p Glycolysis/Gluconeogenesis 5.3.1.9 b4025 PGK (PHOSGLYPHOS-RXN) phosphoglycerate kinase [c] : 3pg + atp <==> 13dpg + adp Glycolysis/Gluconeogenesis 2.7.2.3 b2926 PGL (6PGLUCONOLACT-RXN) 6-phosphogluconolactonase [c] : 6pgl + h2o --> 6pgc + h Pentose Phosphate Pathway 3.1.1.31 b0767 ((RIGHT REMOVE PROTON)) PGLYCP (GPH-RXN) Phosphoglycolate phosphatase [c] : 2pglyc + h2o --> glyclt + pi Alternate Carbon Metabolism 3.1.3.18 b3385 PGM (3PGAREARR-RXN) phosphoglycerate mutase [c] : 2pg <==> 3pg Glycolysis/Gluconeogenesis 5.4.2.1 ( b4395 or b0755 or b3612 ) PGMT phosphoglucomutase [c] : g1p <==> g6p Alternate Carbon Metabolism 5.4.2.2 ( b2690 or b0688 ) PGP120abcpp "phosphatidylglycerophosphate transport via ABC system (n-C12:0, periplasm)" atp[c] + h2o[c] + pgp120[c] --> adp[c] + h[c] + pgp120[p] + pi[c] "Transport, Inner Membrane" b0914 PGP140abcpp "phosphatidylglycerophosphate transport via ABC system (n-C14:0, periplasm)" atp[c] + h2o[c] + pgp140[c] --> adp[c] + h[c] + pgp140[p] + pi[c] "Transport, Inner Membrane" b0914 PGP141abcpp "phosphatidylglycerophosphate transport via ABC system (n-C14:1, periplasm)" atp[c] + h2o[c] + pgp141[c] --> adp[c] + h[c] + pgp141[p] + pi[c] "Transport, Inner Membrane" b0914 PGP160abcpp "phosphatidylglycerophosphate transport via ABC system (n-C16:0, periplasm)" atp[c] + h2o[c] + pgp160[c] --> adp[c] + h[c] + pgp160[p] + pi[c] "Transport, Inner Membrane" b0914 PGP161abcpp "phosphatidylglycerophosphate transport via ABC system (n-C16:1, periplasm)" atp[c] + h2o[c] + pgp161[c] --> adp[c] + h[c] + pgp161[p] + pi[c] "Transport, Inner Membrane" b0914 PGP180abcpp "phosphatidylglycerophosphate transport via ABC system (n-C18:0, periplasm)" atp[c] + h2o[c] + pgp180[c] --> adp[c] + h[c] + pgp180[p] + pi[c] "Transport, Inner Membrane" b0914 PGP181abcpp "phosphatidylglycerophosphate transport via ABC system (n-C18:1, periplasm)" atp[c] + h2o[c] + pgp181[c] --> adp[c] + h[c] + pgp181[p] + pi[c] "Transport, Inner Membrane" b0914 PGPP120 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C14:0) [c] : h2o + pgp120 --> pg120 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP120pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)" [p] : h2o + pgp120 --> pg120 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP140 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C14:0) [c] : h2o + pgp140 --> pg140 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP140pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)" [p] : h2o + pgp140 --> pg140 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP141 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C14:1) [c] : h2o + pgp141 --> pg141 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP141pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:1)" [p] : h2o + pgp141 --> pg141 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b0418 or b1278 ) PGPP160 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C16:0) [c] : h2o + pgp160 --> pg160 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b0418 or b1278 ) PGPP160pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:0)" [p] : h2o + pgp160 --> pg160 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b0418 or b1278 ) PGPP161 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C16:1) [c] : h2o + pgp161 --> pg161 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP161pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:1)" [p] : h2o + pgp161 --> pg161 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP180 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C18:0) [c] : h2o + pgp180 --> pg180 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP180pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:0)" [p] : h2o + pgp180 --> pg180 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP181 (PGPPHOSPHA-RXN) phosphatidylglycerol phosphate phosphatase (n-C18:1) [c] : h2o + pgp181 --> pg181 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b1278 or b0418 ) PGPP181pp "phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:1)" [p] : h2o + pgp181 --> pg181 + pi Glycerophospholipid Metabolism 3.1.3.27 ( b0418 or b1278 ) PGSA120 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C12:0) [c] : cdpdddecg + glyc3p --> cmp + h + pgp120 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PGSA140 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C14:0) [c] : cdpdtdecg + glyc3p --> cmp + h + pgp140 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PGSA141 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C14:1) [c] : cdpdtdec7eg + glyc3p --> cmp + h + pgp141 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PGSA160 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C16:0) [c] : cdpdhdecg + glyc3p --> cmp + h + pgp160 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PGSA161 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C16:1) [c] : cdpdhdec9eg + glyc3p --> cmp + h + pgp161 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PGSA180 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C18:0) [c] : cdpdodecg + glyc3p --> cmp + h + pgp180 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PGSA181 (PHOSPHAGLYPSYN-RXN) Phosphatidylglycerol synthase (n-C18:1) [c] : cdpdodec11eg + glyc3p --> cmp + h + pgp181 Glycerophospholipid Metabolism 2.7.8.5 b1912 ((RIGHT REMOVE PROTON)) PHEMEabcpp (TRANS-RXN0-162) protoheme transport via ABC system (periplasm) atp[c] + h2o[c] + pheme[c] --> adp[c] + h[c] + pheme[p] + pi[c] Update ( b2201 and b2200 and b2199 ) ((RIGHT REMOVE PROTON)) PHEMEtiex protoheme transport irreversible out via diffusion (periplasm to extracellular) pheme[p] --> pheme[e] "Transport, Outer Membrane" (:DIFFUSION) PHETA1 (PHEAMINOTRANS-RXN) phenylalanine transaminase [c] : akg + phe-L <==> glu-L + phpyr "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 2.6.1.58 ( b4054 or b3770 or b0928 ) PHETRS (PHENYLALANINE--TRNA-LIGASE-RXN) Phenylalanyl-tRNA synthetase [c] : atp + phe-L + trnaphe --> amp + phetrna + ppi Update 6.1.1.20 ( b1713 and b1714 ) PHEt2rpp (TRANS-RXN-56) L-phenylalanine reversible transport via proton symport (periplasm) h[p] + phe-L[p] <==> h[c] + phe-L[c] "Transport, Inner Membrane" ( b0112 or b0576 ) PHEtex L-phenylalanine transport via diffusion (extracellular to periplasm) phe-L[e] <==> phe-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PHYTSpp Phytase (periplasm) [p] : (6) h2o + minohp --> inost + (6) pi Update b0980 PIt2rpp (TRANS-RXN-114) phosphate reversible transport via symport (periplasm) h[p] + pi[p] <==> h[c] + pi[c] "Transport, Inner Membrane" ( b3493 or b2987 ) PItex phosphate transport via diffusion (extracellular to periplasm) pi[e] <==> pi[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PIuabcpp "phosphate transport via ABC system (uptake, periplasm)" atp[c] + h2o[c] + pi[p] --> adp[c] + h[c] + (2) pi[c] "Transport, Inner Membrane" ( b3726 and b3725 and b3727 and b3728 ) PLIPA1A120pp "Phospholipase A1 (phosphatidate, n-C12:0) (periplasm)" [p] : h2o + pa120 --> 2ddecg3p + ddca + h Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1A140pp "Phospholipase A1 (phosphatidate, n-C14:0) (periplasm)" [p] : h2o + pa140 --> 2tdecg3p + h + ttdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1A141pp "Phospholipase A1 (phosphatidate, n-C14:1) (periplasm)" [p] : h2o + pa141 --> 2tdec7eg3p + h + ttdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1A160pp "Phospholipase A1 (phosphatidate, n-C16:0) (periplasm)" [p] : h2o + pa160 --> 2hdecg3p + h + hdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1A161pp "Phospholipase A1 (phosphatidate, n-C16:1) (periplasm)" [p] : h2o + pa161 --> 2hdec9eg3p + h + hdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1A180pp "Phospholipase A1 (phosphatidate, n-C18:0) (periplasm)" [p] : h2o + pa180 --> 2odecg3p + h + ocdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1A181pp "Phospholipase A1 (phosphatidate, n-C18:1) (periplasm)" [p] : h2o + pa181 --> 2odec11eg3p + h + ocdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E120pp "Phospholipase A1 (phosphatidylethanolamine, n-C12:0) (periplasm)" [p] : h2o + pe120 --> 2agpe120 + ddca + h Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E140pp "Phospholipase A1 (phosphatidylethanolamine, n-C14:0) (periplasm)" [p] : h2o + pe140 --> 2agpe140 + h + ttdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E141pp "Phospholipase A1 (phosphatidylethanolamine, n-C14:1) (periplasm)" [p] : h2o + pe141 --> 2agpe141 + h + ttdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E160pp "Phospholipase A1 (phosphatidylethanolamine, n-C16:0) (periplasm)" [p] : h2o + pe160 --> 2agpe160 + h + hdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E161pp "Phospholipase A1 (phosphatidylethanolamine, n-C16:1) (periplasm)" [p] : h2o + pe161 --> 2agpe161 + h + hdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E180pp "Phospholipase A1 (phosphatidylethanolamine, n-C18:0) (periplasm)" [p] : h2o + pe180 --> 2agpe180 + h + ocdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1E181pp "Phospholipase A1 (phosphatidylethanolamine, n-C18:1) (periplasm)" [p] : h2o + pe181 --> 2agpe181 + h + ocdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G120pp "Phospholipase A1 (phosphatidylglycerol, n-C12:0) (periplasm)" [p] : h2o + pg120 --> 2agpg120 + ddca + h Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G140pp "Phospholipase A1 (phosphatidylglycerol, n-C14:0) (periplasm)" [p] : h2o + pg140 --> 2agpg140 + h + ttdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G141pp "Phospholipase A1 (phosphatidylglycerol, n-C14:1) (periplasm)" [p] : h2o + pg141 --> 2agpg141 + h + ttdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G160pp "Phospholipase A1 (phosphatidylglycerol, n-C16:0) (periplasm)" [p] : h2o + pg160 --> 2agpg160 + h + hdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G161pp "Phospholipase A1 (phosphatidylglycerol, n-C16:1) (periplasm)" [p] : h2o + pg161 --> 2agpg161 + h + hdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G180pp "Phospholipase A1 (phosphatidylglycerol, n-C18:0) (periplasm)" [p] : h2o + pg180 --> 2agpg180 + h + ocdca Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA1G181pp "Phospholipase A1 (phosphatidylglycerol, n-C18:1) (periplasm)" [p] : h2o + pg181 --> 2agpg181 + h + ocdcea Glycerophospholipid Metabolism 3.1.1.32 b3821 (:UNMAPPED-CPDS) PLIPA2A120pp "Phospholipase A2 (phosphatidate, n-C12:0) (periplasm)" [p] : h2o + pa120 --> 1ddecg3p + ddca + h Glycerophospholipid Metabolism 3.1.1.4 b3821 PLIPA2A140pp "Phospholipase A2 (phosphatidate, n-C14:0) (periplasm)" [p] : h2o + pa140 --> 1tdecg3p + h + ttdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2A141pp "Phospholipase A2 (phosphatidate, n-C14:1) (periplasm)" [p] : h2o + pa141 --> 1tdec7eg3p + h + ttdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2A160pp "Phospholipase A2 (phosphatidate, n-C16:0) (periplasm)" [p] : h2o + pa160 --> 1hdecg3p + h + hdca Glycerophospholipid Metabolism 3.1.1.4 b3821 PLIPA2A161pp "Phospholipase A2 (phosphatidate, n-C16:1) (periplasm)" [p] : h2o + pa161 --> 1hdec9eg3p + h + hdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 PLIPA2A180pp "Phospholipase A2 (phosphatidate, n-C18:0) (periplasm)" [p] : h2o + pa180 --> 1odecg3p + h + ocdca Glycerophospholipid Metabolism 3.1.1.4 b3821 PLIPA2A181pp "Phospholipase A2 (phosphatidate, n-C18:1) (periplasm)" [p] : h2o + pa181 --> 1odec11eg3p + h + ocdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 PLIPA2E120pp "Phospholipase A2 (phosphatidylethanolamine, n-C12:0) (periplasm)" [p] : h2o + pe120 --> 1agpe120 + ddca + h Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2E140pp "Phospholipase A2 (phosphatidylethanolamine, n-C14:0) (periplasm)" [p] : h2o + pe140 --> 1agpe140 + h + ttdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2E141pp "Phospholipase A2 (phosphatidylethanolamine, n-C14:1) (periplasm)" [p] : h2o + pe141 --> 1agpe141 + h + ttdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2E160pp "Phospholipase A2 (phosphatidylethanolamine, n-C16:0) (periplasm)" [p] : h2o + pe160 --> 1agpe160 + h + hdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2E161pp "Phospholipase A2 (phosphatidylethanolamine, n-C16:1) (periplasm)" [p] : h2o + pe161 --> 1agpe161 + h + hdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2E180pp "Phospholipase A2 (phosphatidylethanolamine, n-C18:0) (periplasm)" [p] : h2o + pe180 --> 1agpe180 + h + ocdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2E181pp "Phospholipase A2 (phosphatidylethanolamine, n-C18:1) (periplasm)" [p] : h2o + pe181 --> 1agpe181 + h + ocdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G120pp "Phospholipase A2 (phosphatidylglycerol, n-C12:0) (periplasm)" [p] : h2o + pg120 --> 1agpg120 + ddca + h Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G140pp "Phospholipase A2 (phosphatidylglycerol, n-C14:0) (periplasm)" [p] : h2o + pg140 --> 1agpg140 + h + ttdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G141pp "Phospholipase A2 (phosphatidylglycerol, n-C14:1) (periplasm)" [p] : h2o + pg141 --> 1agpg141 + h + ttdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G160pp "Phospholipase A2 (phosphatidylglycerol, n-C16:0) (periplasm)" [p] : h2o + pg160 --> 1agpg160 + h + hdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G161pp "Phospholipase A2 (phosphatidylglycerol, n-C16:1) (periplasm)" [p] : h2o + pg161 --> 1agpg161 + h + hdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G180pp "Phospholipase A2 (phosphatidylglycerol, n-C18:0) (periplasm)" [p] : h2o + pg180 --> 1agpg180 + h + ocdca Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PLIPA2G181pp "Phospholipase A2 (phosphatidylglycerol, n-C18:1) (periplasm)" [p] : h2o + pg181 --> 1agpg181 + h + ocdcea Glycerophospholipid Metabolism 3.1.1.4 b3821 (:UNMAPPED-CPDS) PMANM (PHOSMANMUT-RXN) phosphomannomutase [c] : man1p <==> man6p Alternate Carbon Metabolism 5.4.2.8 b2048 PMDPHT (RIBOPHOSPHAT-RXN) pyrimidine phosphatase [c] : 5aprbu + h2o --> 4r5au + pi Cofactor and Prosthetic Group Biosynthesis PMPK (PYRIMSYN3-RXN) phosphomethylpyrimidine kinase [c] : 4ampm + atp --> 2mahmp + adp Cofactor and Prosthetic Group Biosynthesis 2.7.4.7 b2103 PNTK (PANTOTHENATE-KIN-RXN) pantothenate kinase [c] : atp + pnto-R --> 4ppan + adp + h Cofactor and Prosthetic Group Biosynthesis 2.7.1.33 b3974 ((RIGHT REMOVE PROTON)) PNTOt4pp (TRANS-RXN-117) Pantothenate sodium symporter (periplasm) na1[p] + pnto-R[p] --> na1[c] + pnto-R[c] "Transport, Inner Membrane" b3258 PNTOtex Pantothenate transport via diffusion (extracellular to periplasm) pnto-R[e] <==> pnto-R[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) POX (PYRUVOXID-RXN) pyruvate oxidase [c] : h2o + pyr + q8 --> ac + co2 + q8h2 Oxidative Phosphorylation 1.2.2.2 b0871 PPA (INORGPYROPHOSPHAT-RXN) inorganic diphosphatase [c] : h2o + ppi --> h + (2) pi Anaplerotic reactions 3.6.1.1 ( b4226 or b2744 or b2502 ) ((RIGHT REMOVE PROTON)) PPA2 (TRIPHOSPHATASE-RXN) inorganic triphosphatase [c] : h2o + pppi --> h + pi + ppi Update 3.6.1.1 ( b2502 or b2744 ) (:METACYC (RIGHT REMOVE PROTON)) PPAKr (PROPKIN-RXN) Propionate kinase [c] : adp + ppap <==> atp + ppa Alternate Carbon Metabolism 2.7.2.1 b3115 PPALtex propanal transport via diffusion (extracellular to periplasm) ppal[e] <==> ppal[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PPALtpp propanal transport via channel (periplasm) ppal[c] <==> ppal[p] "Transport, Inner Membrane" (:DIFFUSION) PPAt4pp Na+/Propionate symporter (periplasm) na1[p] + ppa[p] --> na1[c] + ppa[c] "Transport, Inner Membrane" b1015 PPAtex propionate transport via diffusion ppa[e] <==> ppa[p] "Transport, Outer Membrane Porin" ( b1377 or b0929 or b2215 or b0241 ) (:DIFFUSION) PPBNGS (PORPHOBILSYNTH-RXN) porphobilinogen synthase [c] : (2) 5aop --> h + (2) h2o + ppbng Cofactor and Prosthetic Group Biosynthesis 4.2.1.24 b0369 ((RIGHT REMOVE PROTON)) PPC (PEPCARBOX-RXN) phosphoenolpyruvate carboxylase [c] : co2 + h2o + pep --> h + oaa + pi Anaplerotic reactions 4.1.1.31 b3956 ((RIGHT REMOVE PROTON)) PPCDC (P-PANTOCYSDECARB-RXN) phosphopantothenoylcysteine decarboxylase [c] : 4ppcys + h --> co2 + pan4p Cofactor and Prosthetic Group Biosynthesis 4.1.1.36 b3639 ((LEFT REMOVE PROTON)) PPCK (PEPCARBOXYKIN-RXN) phosphoenolpyruvate carboxykinase [c] : atp + oaa --> adp + co2 + pep Anaplerotic reactions 4.1.1.49 b3403 PPCSCT (RXN0-268) Propanoyl-CoA: succinate CoA-transferase [c] : ppcoa + succ --> ppa + succoa Alternate Carbon Metabolism b2920 PPGPPDP (PPGPPSYN-RXN) "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase" [c] : h2o + ppgpp --> gdp + ppi Update 3.1.7.2 b3650 PPK2r polyphosphate kinase [c] : atp + ppi <==> adp + pppi Update 2.7.4.1 b2501 PPKr polyphosphate kinase [c] : atp + pi <==> adp + ppi Update 2.7.4.1 b2501 PPM (PPENTOMUT-RXN) phosphopentomutase [c] : r1p <==> r5p Alternate Carbon Metabolism 5.4.2.7 ( b3380 or b4383 ) PPM2 (D-PPENTOMUT-RXN) phosphopentomutase 2 (deoxyribose) [c] : 2dr1p <==> 2dr5p Alternate Carbon Metabolism 5.4.2.7 b4383 PPNCL2 (P-PANTOCYSLIG-RXN) phosphopantothenate-cysteine ligase [c] : 4ppan + ctp + cys-L --> 4ppcys + cmp + h + ppi Cofactor and Prosthetic Group Biosynthesis 6.3.2.5 b3639 ((RIGHT REMOVE PROTON)) PPND (PREPHENATEDEHYDROG-RXN) prephenate dehydrogenase [c] : nad + pphn --> 34hpp + co2 + nadh "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 1.3.1.12 b2600 PPNDH (PREPHENATEDEHYDRAT-RXN) prephenate dehydratase [c] : h + pphn --> co2 + h2o + phpyr "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.2.1.51 b2599 ((LEFT REMOVE PROTON)) PPPGO (PROTOPORGENOXI-RXN) protoporphyrinogen oxidase (aerobic) [c] : (1.5) o2 + pppg9 --> (3) h2o + ppp9 Cofactor and Prosthetic Group Biosynthesis 1.3.3.4 b3850 PPPGO3 protoporphyrinogen oxidase (anaerobic) [c] : (3) fum + pppg9 --> ppp9 + (3) succ Update 1.3.3.4 b3850 PPPNDO (HCAMULTI-RXN) Phenylpropanoate Dioxygenase [c] : h + nadh + o2 + pppn --> cechddd + nad Alternate Carbon Metabolism ( b2538 and b2539 and b2540 and b2542 ) PPPNt2rpp "3-phenylpropionate transport via proton symport, reversible (periplasm)" h[p] + pppn[p] <==> h[c] + pppn[c] Putative Transporters b2536 PPPNtex 3-phenylpropionate transport via diffusion (extracellular to periplasm) pppn[e] <==> pppn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PPS (PEPSYNTH-RXN) phosphoenolpyruvate synthase [c] : atp + h2o + pyr --> amp + (2) h + pep + pi Glycolysis/Gluconeogenesis 2.7.9.2 b1702 ((RIGHT REMOVE PROTON)) PPTHpp Phosphonate hydrogenase (periplasm) [p] : h2o + ppt --> h2 + pi Update b0383 PPTtex Phosphonate transport via diffusion (extracellular to periplasm) ppt[e] <==> ppt[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PRAGSr (GLYRIBONUCSYN-RXN) phosphoribosylglycinamide synthase [c] : atp + gly + pram <==> adp + gar + h + pi Purine and Pyrimidine Biosynthesis 6.3.4.13 b4005 ((RIGHT REMOVE PROTON)) PRAIS (AIRS-RXN) phosphoribosylaminoimidazole synthase [c] : atp + fpram --> adp + air + (2) h + pi Purine and Pyrimidine Biosynthesis 6.3.3.1 b2499 ((RIGHT REMOVE PROTON)) PRAIi (PRAISOM-RXN) phosphoribosylanthranilate isomerase (irreversible) [c] : pran --> 2cpr5p "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 5.3.1.24 b1262 PRAMPC (HISTCYCLOHYD-RXN) phosphoribosyl-AMP cyclohydrolase [c] : h2o + prbamp --> prfp Histidine Metabolism 3.5.4.19 b2026 PRASCS (SAICARSYN-RXN) phosphoribosylaminoimidazolesuccinocarboxamide synthase [c] : 5aizc + asp-L + atp <==> 25aics + adp + h + pi Purine and Pyrimidine Biosynthesis 6.3.2.6 b2476 ((RIGHT REMOVE PROTON)) PRATPP (HISTPRATPHYD-RXN) phosphoribosyl-ATP pyrophosphatase [c] : h2o + prbatp --> h + ppi + prbamp Histidine Metabolism 3.6.1.31 b2026 ((RIGHT REMOVE PROTON)) PRFGS (FGAMSYN-RXN) phosphoribosylformylglycinamidine synthase [c] : atp + fgam + gln-L + h2o --> adp + fpram + glu-L + h + pi Purine and Pyrimidine Biosynthesis 6.3.5.3 b2557 ((RIGHT REMOVE PROTON)) PRMICI (PRIBFAICARPISOM-RXN) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase [c] : prfp <==> prlp Histidine Metabolism 5.3.1.16 b2024 PROD2 (RXN-821) Proline dehydrogenase [c] : fad + pro-L --> 1pyr5c + fadh2 + h Arginine and Proline Metabolism 1.5.99.8 b1014 ((RIGHT REMOVE PROTON)) PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) atp[c] + h2o[c] + progly[p] --> adp[c] + h[c] + pi[c] + progly[c] "Transport, Inner Membrane" ( b3544 and b3543 and b3542 and b3541 and b3540 ) (:UNMAPPED-CPDS) PROGLYtex L-Prolinylglycine transport via diffusion (extracellular to periplasm) progly[e] <==> progly[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:UNMAPPED-CPDS) PROTRS (PROLINE--TRNA-LIGASE-RXN) Prolyl-tRNA synthetase [c] : atp + pro-L + trnapro --> amp + ppi + protrna Update 6.1.1.15 b0194 PROabcpp (ABC-26-RXN) L-proline transport via ABC system (periplasm) atp[c] + h2o[c] + pro-L[p] --> adp[c] + h[c] + pi[c] + pro-L[c] "Transport, Inner Membrane" ( b2677 and b2678 and b2679 ) ((RIGHT REMOVE PROTON)) PROt2rpp (TRANS-RXN-29) L-proline reversible transport via proton symport (periplasm) h[p] + pro-L[p] <==> h[c] + pro-L[c] "Transport, Inner Membrane" b4111 PROt4pp (TRANS-RXN-118) Na+/Proline-L symporter (periplasm) na1[p] + pro-L[p] --> na1[c] + pro-L[c] "Transport, Inner Membrane" b1015 PROtex L-proline transport via diffusion (extracellular to periplasm) pro-L[e] <==> pro-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PRPPS (PRPPSYN-RXN) phosphoribosylpyrophosphate synthetase [c] : atp + r5p <==> amp + h + prpp Histidine Metabolism 2.7.6.1 b1207 ((RIGHT REMOVE PROTON)) PSCVT (2.5.1.19-RXN) 3-phosphoshikimate 1-carboxyvinyltransferase [c] : pep + skm5p <==> 3psme + pi "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 2.5.1.19 b0908 PSD120 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C12:0) [c] : h + ps120 --> co2 + pe120 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSD140 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C14:0) [c] : h + ps140 --> co2 + pe140 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSD141 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C14:1) [c] : h + ps141 --> co2 + pe141 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSD160 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C16:0) [c] : h + ps160 --> co2 + pe160 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSD161 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C16:1) [c] : h + ps161 --> co2 + pe161 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSD180 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C18:0) [c] : h + ps180 --> co2 + pe180 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSD181 (PHOSPHASERDECARB-RXN) Phosphatidylserine decarboxylase (n-C18:1) [c] : h + ps181 --> co2 + pe181 Glycerophospholipid Metabolism 4.1.1.65 b4160 ((LEFT REMOVE PROTON)) PSERT (PSERTRANSAM-RXN) phosphoserine transaminase [c] : 3php + glu-L --> akg + pser-L Glycine and Serine Metabolism 2.6.1.52 b0907 PSERtex phospho-L-serine transport via diffusion (extracellular to periplasm) pser-L[e] <==> pser-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PSP_L (RXN0-5114) phosphoserine phosphatase (L-serine) [c] : h2o + pser-L --> pi + ser-L Glycine and Serine Metabolism 3.1.3.3 b4388 PSP_Lpp phospho-L-serine phosphatase (periplasmic) [p] : h2o + pser-L --> pi + ser-L Update b4055 PSSA120 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C12:0) [c] : cdpdddecg + ser-L --> cmp + h + ps120 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PSSA140 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C14:0) [c] : cdpdtdecg + ser-L --> cmp + h + ps140 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PSSA141 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C14:1) [c] : cdpdtdec7eg + ser-L --> cmp + h + ps141 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PSSA160 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C16:0) [c] : cdpdhdecg + ser-L --> cmp + h + ps160 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PSSA161 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C16:1) [c] : cdpdhdec9eg + ser-L --> cmp + h + ps161 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PSSA180 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C18:0) [c] : cdpdodecg + ser-L --> cmp + h + ps180 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PSSA181 (PHOSPHASERSYN-RXN) Phosphatidylserine syntase (n-C18:1) [c] : cdpdodec11eg + ser-L --> cmp + h + ps181 Glycerophospholipid Metabolism 2.7.8.8 b2585 ((RIGHT REMOVE PROTON)) PTA2 (PTAALT-RXN) Phosphate acetyltransferase [c] : pi + ppcoa --> coa + ppap Alternate Carbon Metabolism b2297 PTAr (PHOSACETYLTRANS-RXN) phosphotransacetylase [c] : accoa + pi <==> actp + coa Pyruvate Metabolism 2.3.1.8 ( b2458 or b2297 ) PTHRpp phospho-L-threonine phosphatase (periplasmic) [p] : h2o + thrp --> pi + thr-L Update b4055 PTPATi (PANTEPADENYLYLTRAN-RXN) pantetheine-phosphate adenylyltransferase [c] : atp + h + pan4p --> dpcoa + ppi Cofactor and Prosthetic Group Biosynthesis 2.7.7.3 b3634 ((LEFT REMOVE PROTON)) PTRCORNt7pp putrescine/ornithine antiporter (periplasm) orn[c] + ptrc[p] <==> orn[p] + ptrc[c] "Transport, Inner Membrane" b0692 PTRCTA (PUTTRANSAM-RXN) Putrescine Transaminase [c] : akg + ptrc --> 4abutn + glu-L Arginine and Proline Metabolism 2.6.1.29 b3073 PTRCabcpp (ABC-25-RXN) putrescine transport via ABC system (periplasm) atp[c] + h2o[c] + ptrc[p] --> adp[c] + h[c] + pi[c] + ptrc[c] "Transport, Inner Membrane" ( ( b1440 and b1441 and b1442 and b1443 ) or ( b0854 and b0855 and b0856 and b0857 ) or ( b1126 and b1125 and b1124 and b1123 ) ) ((RIGHT REMOVE PROTON)) PTRCt2pp (TRANS-RXN-69) putrescine transport in via proton symport h[p] + ptrc[p] --> h[c] + ptrc[c] Update b1296 PTRCt2rpp (TRANS-RXN-69) "putrescine transport in via proton symport, reversible (periplasm)" h[p] + ptrc[p] <==> h[c] + ptrc[c] "Transport, Inner Membrane" b0692 PTRCtex putrescine transport via diffusion (extracellular to periplasm) ptrc[e] <==> ptrc[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) PUNP1 (ADENPHOSPHOR-RXN) purine-nucleoside phosphorylase (Adenosine) [c] : adn + pi <==> ade + r1p Nucleotide Salvage Pathway 2.4.2.1 b4384 PUNP2 (DEOXYADENPHOSPHOR-RXN) purine-nucleoside phosphorylase (Deoxyadenosine) [c] : dad-2 + pi <==> 2dr1p + ade Nucleotide Salvage Pathway 2.4.2.1 b4384 PUNP3 (GUANPHOSPHOR-RXN) purine-nucleoside phosphorylase (Guanosine) [c] : gsn + pi <==> gua + r1p Nucleotide Salvage Pathway 2.4.2.1 ( b2407 or b4384 ) PUNP4 (DEOXYGUANPHOSPHOR-RXN) purine-nucleoside phosphorylase (Deoxyguanosine) [c] : dgsn + pi <==> 2dr1p + gua Nucleotide Salvage Pathway 2.4.2.1 ( b2407 or b4384 ) PUNP5 (INOPHOSPHOR-RXN) purine-nucleoside phosphorylase (Inosine) [c] : ins + pi <==> hxan + r1p Nucleotide Salvage Pathway 2.4.2.1 ( b2407 or b4384 ) PUNP6 (DEOXYINOPHOSPHOR-RXN) purine-nucleoside phosphorylase (Deoxyinosine) [c] : din + pi <==> 2dr1p + hxan Nucleotide Salvage Pathway 2.4.2.1 ( b2407 or b4384 ) PUNP7 (XANTHOSINEPHOSPHORY-RXN) purine-nucleoside phosphorylase (Xanthosine) [c] : pi + xtsn <==> r1p + xan Nucleotide Salvage Pathway 2.4.2.1 b2407 PYAM5PO (PMPOXI-RXN) pyridoxamine 5'-phosphate oxidase [c] : h2o + o2 + pyam5p --> h2o2 + nh4 + pydx5p Cofactor and Prosthetic Group Biosynthesis 1.4.3.5 b1638 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) PYDAMK (PYRAMKIN-RXN) pyridoxamine kinase [c] : atp + pydam --> adp + h + pyam5p Cofactor and Prosthetic Group Biosynthesis 2.7.1.35 b2418 ((RIGHT REMOVE PROTON)) PYDXK (PYRIDOXKIN-RXN) pyridoxal kinase [c] : atp + pydx --> adp + h + pydx5p Cofactor and Prosthetic Group Biosynthesis 2.7.1.35 ( b1636 or b2418 ) ((RIGHT REMOVE PROTON)) PYDXNK (PNKIN-RXN) pyridoxine kinase [c] : atp + pydxn --> adp + h + pdx5p Cofactor and Prosthetic Group Biosynthesis 2.7.1.35 b2418 ((RIGHT REMOVE PROTON)) PYDXPP (3.1.3.74-RXN) Pyridoxal 5-phosphate phosphatase [c] : h2o + pydx5p --> pi + pydx Cofactor and Prosthetic Group Biosynthesis (:METACYC) PYK (PEPDEPHOS-RXN) pyruvate kinase [c] : adp + h + pep --> atp + pyr Glycolysis/Gluconeogenesis 2.7.1.40 ( b1854 or b1676 ) ((LEFT REMOVE PROTON)) PYNP2r (URPHOS-RXN) pyrimidine-nucleoside phosphorylase (uracil) [c] : pi + uri <==> r1p + ura Nucleotide Salvage Pathway 2.4.2.2 b3831 PYRt2rpp pyruvate reversible transport via proton symport (periplasm) h[p] + pyr[p] <==> h[c] + pyr[c] "Transport, Inner Membrane" PYRtex pyruvate transport via diffusion (extracellular to periplasm) pyr[e] <==> pyr[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) QMO2 quinol monooxygenase (Ubiquinol-8) [c] : (2) o2 + q8h2 --> (2) h + (2) o2s + q8 Update b3029 QMO3 quinol monooxygenase (menaquinol 8) [c] : mql8 + (2) o2 --> (2) h + mqn8 + (2) o2s Update b3029 QULNS (QUINOLINATE-SYNTHA-RXN) quinolinate synthase [c] : dhap + iasp --> (2) h2o + pi + quln Cofactor and Prosthetic Group Biosynthesis b0750 R15BPK (RXN0-1401) "ribose-1,5-bisphosphokinase" [c] : atp + r15bp --> adp + prpp Update b4094 R1PK (RXN0-1402) ribose 1-phosphokinase [c] : atp + r1p --> adp + h + r15bp Update ((RIGHT REMOVE PROTON)) R5PP (SUGAR-PHOSPHATASE-RXN) ribose 5-phosphate phosphatase [c] : h2o + r5p --> pi + rib-D Update b0822 (:EXPANDED-RXN-MATCH) R5PPpp ribose 5-phosphate phosphatase [p] : h2o + r5p --> pi + rib-D Update b4055 R5Ptex Ribose 5-phosphate transport via diffusion (extracellular to periplasm) r5p[e] <==> r5p[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) RBFK (RIBOFLAVINKIN-RXN) riboflavin kinase [c] : atp + ribflv --> adp + fmn + h Cofactor and Prosthetic Group Biosynthesis 2.7.1.26 b0025 ((RIGHT REMOVE PROTON)) RBFSa (LUMAZINESYN-RXN) riboflavin synthase [c] : 4r5au + db4p --> dmlz + (2) h2o + pi Cofactor and Prosthetic Group Biosynthesis 2.5.1.9 b1662 RBFSb (RIBOFLAVIN-SYN-RXN) riboflavin synthase [c] : (2) dmlz --> 4r5au + ribflv Cofactor and Prosthetic Group Biosynthesis 2.5.1.9 b0415 RBK (RIBOKIN-RXN) ribokinase [c] : atp + rib-D --> adp + h + r5p Alternate Carbon Metabolism 2.7.1.15 b3752 ((RIGHT REMOVE PROTON)) RBK_L1 (RXN0-5116) L-ribulokinase (L-ribulose) [c] : atp + rbl-L --> adp + h + ru5p-L Alternate Carbon Metabolism 2.7.1.16 b0063 ((RIGHT REMOVE PROTON)) RBP4E (RIBULPEPIM-RXN) L-ribulose-phosphate 4-epimerase [c] : ru5p-L <==> xu5p-D Alternate Carbon Metabolism 5.1.3.4 ( b4198 or b3583 or b0061 ) RHAT1 rhamnosyltransferase I (LPS core biosynthesis) [c] : dtdprmn + kphphhlipa --> dtdp + h + icolipa Lipopolysaccharide Biosynthesis / Recycling b3629 (:UNMAPPED-CPDS) RHCCE (RIBOSYLHOMOCYSTEINASE-RXN) S-ribosylhomocysteine cleavage enzyme [c] : rhcys --> dhptd + hcys-L Methionine Metabolism b2687 (:METACYC) RIBabcpp (ABC-28-RXN) D-ribose transport via ABC system (periplasm) atp[c] + h2o[c] + rib-D[p] --> adp[c] + h[c] + pi[c] + rib-D[c] "Transport, Inner Membrane" ( ( b3749 and b3751 and b3750 and b3748 ) or ( b4087 and b4088 and b4086 ) or ( b4231 and b4227 and b4485 and b4230 ) ) ((RIGHT REMOVE PROTON)) RIBtex (RXN0-1683) ribose transport via diffusion (extracellular to periplasm) rib-D[e] <==> rib-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) RMI (RHAMNISOM-RXN) L-rhamnose isomerase [c] : rmn <==> rml Alternate Carbon Metabolism 5.3.1.14 b3903 RMK (RHAMNULOKIN-RXN) rhamnulokinase [c] : atp + rml --> adp + h + rml1p Alternate Carbon Metabolism 2.7.1.5 b3904 ((RIGHT REMOVE PROTON)) RMNtex (RXN0-1683) L-rhamnose transport via diffusion (extracellular to periplasm) rmn[e] <==> rmn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) RMNtpp (TRANS-RXN-112) L-rhamnose transport via proton symport (periplasm) h[p] + rmn[p] --> h[c] + rmn[c] "Transport, Inner Membrane" b3907 RMPA (RHAMNULPALDOL-RXN) Rhamnulose-1-phosphate aldolase [c] : rml1p <==> dhap + lald-L Alternate Carbon Metabolism 4.1.2.19 b3902 RNDR1 (ADPREDUCT-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN) ribonucleoside-diphosphate reductase (ADP) [c] : adp + trdrd --> dadp + h2o + trdox Nucleotide Salvage Pathway 1.17.4.1 ( b2234 and b2235 ) (:EXPANDED-RXN-MATCH) RNDR1b (RXN0-747) ribonucleoside-diphosphate reductase (ADP) (glutaredoxin) [c] : adp + grxrd --> dadp + grxox + h2o Update ( b2675 and b2676 ) (:EXPANDED-RXN-MATCH) RNDR2 (GDPREDUCT-RXN RIBONUCLEOSIDE-DIP-REDUCTI-RXN) ribonucleoside-diphosphate reductase (GDP) [c] : gdp + trdrd --> dgdp + h2o + trdox Nucleotide Salvage Pathway 1.17.4.1 ( b2234 and b2235 ) (:EXPANDED-RXN-MATCH) RNDR2b (RXN0-748) ribonucleoside-diphosphate reductase (GDP) (glutaredoxin) [c] : gdp + grxrd --> dgdp + grxox + h2o Update ( b2675 and b2676 ) (:EXPANDED-RXN-MATCH) RNDR3 (RIBONUCLEOSIDE-DIP-REDUCTI-RXN CDPREDUCT-RXN) ribonucleoside-diphosphate reductase (CDP) [c] : cdp + trdrd --> dcdp + h2o + trdox Nucleotide Salvage Pathway 1.17.4.1 ( b2234 and b2235 ) (:EXPANDED-RXN-MATCH) RNDR3b (RIBONUCLEOSIDE-DIP-REDUCTII-RXN) ribonucleoside-diphosphate reductase (CDP) (glutaredoxin) [c] : cdp + grxrd --> dcdp + grxox + h2o Update ( b2675 and b2676 ) (:EXPANDED-RXN-MATCH) RNDR4 (RIBONUCLEOSIDE-DIP-REDUCTI-RXN UDPREDUCT-RXN) ribonucleoside-diphosphate reductase (UDP) [c] : trdrd + udp --> dudp + h2o + trdox Nucleotide Salvage Pathway 1.17.4.1 ( b2234 and b2235 ) (:EXPANDED-RXN-MATCH) RNDR4b (RXN0-722) ribonucleoside-diphosphate reductase (UDP) (glutaredoxin) [c] : grxrd + udp --> dudp + grxox + h2o Update ( b2675 and b2676 ) (:EXPANDED-RXN-MATCH) RNTR1c (RXN0-745) ribonucleoside-triphosphate reductase (ATP) (flavodoxin) [c] : atp + fldrd --> datp + fldox + h2o Update ( b4238 or ( b3924 and b4238 and b4237 ) ) RNTR2c (RXN0-746) ribonucleoside-triphosphate reductase (GTP) (flavodoxin) [c] : fldrd + gtp --> dgtp + fldox + h2o Update ( ( b3924 and b4238 and b4237 ) or b4238 ) RNTR3c (RXN0-723) ribonucleoside-triphosphate reductase (CTP) (flavodoxin) [c] : ctp + fldrd --> dctp + fldox + h2o Update ( b4238 or ( b3924 and b4238 and b4237 ) ) RNTR4c (RXN0-724) ribonucleoside-triphosphate reductase (UTP) (flavodoxin) [c] : fldrd + utp --> dutp + fldox + h2o Update ( b4238 or ( b3924 and b4238 and b4237 ) ) RPE (RIBULP3EPIM-RXN) ribulose 5-phosphate 3-epimerase [c] : ru5p-D <==> xu5p-D Pentose Phosphate Pathway 5.1.3.1 ( b4301 or b3386 ) RPI (RIB5PISOM-RXN) ribose-5-phosphate isomerase [c] : r5p <==> ru5p-D Pentose Phosphate Pathway 5.3.1.6 ( b2914 or b4090 ) RZ5PP (RIBAZOLEPHOSPHAT-RXN) alpha-ribazole 5-phosphate phosphatase [c] : 5prdmbz + h2o --> pi + rdmbzi Cofactor and Prosthetic Group Biosynthesis b0638 S7PI (RXN0-4301) sedoheptulose 7-phosphate isomerase [c] : s7p --> gmhep7p Lipopolysaccharide Biosynthesis / Recycling b0222 SADH (SUCCARGDIHYDRO-RXN) Succinylarginine dihydrolase [c] : (2) h + (2) h2o + sucarg --> co2 + (2) nh4 + sucorn Arginine and Proline Metabolism 2.6.1.69 b1745 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) SADT2 Sulfate adenyltransferase [c] : atp + gtp + h2o + so4 --> aps + gdp + pi + ppi Cysteine Metabolism ( b2751 and b2752 ) SARCOX (SARCOX-RXN) sarcosine oxidase [c] : h2o + o2 + sarcs --> fald + gly + h2o2 Update 1.5.3.1 b1059 (:METACYC) SBTPD (SORB6PDEHYDROG-RXN) sorbitol-6-phosphate dehydrogenase [c] : nad + sbt6p <==> f6p + h + nadh Alternate Carbon Metabolism 1.1.1.140 b2705 ((RIGHT REMOVE PROTON)) SBTptspp (TRANS-RXN-169) D-sorbitol transport via PEP:Pyr PTS (periplasm) pep[c] + sbt-D[p] --> pyr[c] + sbt6p[c] "Transport, Inner Membrane" ( b2415 and b2416 and b2702 and b2704 and b2703 ) SBTtex D-sorbitol transport via diffusion (extracellular to periplasm) sbt-D[e] <==> sbt-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SDPDS (SUCCDIAMINOPIMDESUCC-RXN) succinyl-diaminopimelate desuccinylase [c] : h2o + sl26da --> 26dap-LL + succ Threonine and Lysine Metabolism 3.5.1.18 b2472 SDPTA (SUCCINYLDIAMINOPIMTRANS-RXN) succinyldiaminopimelate transaminase [c] : akg + sl26da <==> glu-L + sl2a6o Threonine and Lysine Metabolism 2.6.1.17 b3359 SELCYSS selenocysteine synthase [c] : selnp + sertrna(sec) --> h + pi + sectrna Update 2.9.1.1 b3591 SELNPS (2.7.9.3-RXN) Selenophosphate synthase [c] : atp + h2o + seln --> amp + pi + selnp Unassigned 2.7.9.3 b1764 SERASr (ENTF-RXN) (L-seryl)adenylate synthase [c] : atp + h + ser-L <==> ppi + seramp Cofactor and Prosthetic Group Biosynthesis b0586 ((LEFT REMOVE PROTON)) SERAT (SERINE-O-ACETTRAN-RXN) serine O-acetyltransferase [c] : accoa + ser-L <==> acser + coa Cysteine Metabolism 2.3.1.30 b3607 SERD_D (DSERDEAM-RXN) D-serine deaminase [c] : ser-D --> nh4 + pyr Glycine and Serine Metabolism b2366 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) SERD_L (4.3.1.17-RXN) L-serine deaminase [c] : ser-L --> nh4 + pyr Glycine and Serine Metabolism 4.3.1.17 ( b1814 or b2797 or b3708 or b4471 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) SERTRS (SERINE--TRNA-LIGASE-RXN) Seryl-tRNA synthetase [c] : atp + ser-L + trnaser --> amp + ppi + sertrna Update 6.1.1.11 b0893 SERTRS2 (RXN0-2161) Seryl-tRNA synthetase (selenocystein) [c] : atp + ser-L + trnasecys --> amp + ppi + sertrna(sec) Update 6.1.1.11 b0893 SERt2rpp (TRANS-RXN-71) L-serine reversible transport via proton symport (periplasm) h[p] + ser-L[p] <==> h[c] + ser-L[c] "Transport, Inner Membrane" ( b2796 or b3116 ) SERt4pp (RXN0-4083) L-serine via sodium symport (periplasm) na1[p] + ser-L[p] --> na1[c] + ser-L[c] "Transport, Inner Membrane" b3089 SERtex L-serine transport via diffusion (extracellular to periplasm) ser-L[e] <==> ser-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SFGTHi (S-FORMYLGLUTATHIONE-HYDROLASE-RXN) S-Formylglutathione hydralase [c] : Sfglutth + h2o --> for + gthrd + h Update 3.1.2.12 ( b0355 or b2154 ) ((RIGHT REMOVE PROTON)) SGDS (SUCCGLUDESUCC-RXN) Succinylglutamate desuccinylase [c] : h2o + sucglu --> glu-L + succ Arginine and Proline Metabolism b1744 SGSAD (SUCCGLUALDDEHYD-RXN) Succinylglutamic semialdehyde dehydrogenase [c] : h2o + nad + sucgsa --> (2) h + nadh + sucglu Arginine and Proline Metabolism b1746 ((RIGHT REMOVE PROTON)) SHCHCS2 (SHCHCSYNTH-RXN) "2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase" [c] : ichor + ssaltpp --> 2shchc + pyr + thmpp Cofactor and Prosthetic Group Biosynthesis b2264 SHCHD2 (DIMETHUROPORDEHYDROG-RXN) sirohydrochlorin dehydrogenase (NAD) [c] : dscl + nad --> h + nadh + scl Cofactor and Prosthetic Group Biosynthesis b3368 ((RIGHT REMOVE PROTON)) SHCHF (SIROHEME-FERROCHELAT-RXN) sirohydrochlorin ferrochetalase [c] : fe2 + scl --> (3) h + sheme Cofactor and Prosthetic Group Biosynthesis b3368 SHK3Dr (SHIKIMATE-5-DEHYDROGENASE-RXN) shikimate dehydrogenase [c] : 3dhsk + h + nadph <==> nadp + skm "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 1.1.1.25 ( b1692 or b3281 ) ((LEFT REMOVE PROTON)) SHKK (SHIKIMATE-KINASE-RXN) shikimate kinase [c] : atp + skm --> adp + h + skm5p "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 2.7.1.71 ( b3390 or b0388 ) ((RIGHT REMOVE PROTON)) SHSL1 (O-SUCCHOMOSERLYASE-RXN) O-succinylhomoserine lyase (L-cysteine) [c] : cys-L + suchms --> cyst-L + h + succ Methionine Metabolism 4.2.99.9 b3939 ((RIGHT REMOVE PROTON)) SKMt2pp (TRANS-RXN-27) shikimate transport in via proton symport (periplasm) h[p] + skm[p] --> h[c] + skm[c] "Transport, Inner Membrane" b1981 SKMtex shikimate transport via diffusion (extracellular to periplasm) skm[e] <==> skm[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SO2tex SO2 transport via diffusion (extracellular to periplasm) so2[e] <==> so2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SO2tpp SO2 transport via diffusion (periplasm) so2[p] <==> so2[c] "Transport, Inner Membrane" (:DIFFUSION) SO3tex sulfite transport via diffusion (extracellular to periplasm) so3[e] <==> so3[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SO4tex sulfate transport via diffusion (extracellular to periplasm) so4[e] <==> so4[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SOTA (SUCCORNTRANSAM-RXN) Succinylornithine transaminase [c] : akg + sucorn --> glu-L + sucgsa Arginine and Proline Metabolism b1748 SPMDAT1 (DIAMACTRANS-RXN) Spermidine acetyltransferase [c] : accoa + spmd --> N1aspmd + coa + h Arginine and Proline Metabolism 2.3.1.57 b1584 (:METACYC :EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) SPMDAT2 (DIAMACTRANS-RXN) Spermidine acetyltransferase (N8) [c] : accoa + spmd --> coa + h + n8aspmd Arginine and Proline Metabolism 2.3.1.57 b1584 (:METACYC :EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) SPMDabcpp (ABC-24-RXN) spermidine transport via ABC system (periplasm) atp[c] + h2o[c] + spmd[p] --> adp[c] + h[c] + pi[c] + spmd[c] "Transport, Inner Membrane" ( ( b1126 and b1125 and b1124 and b1123 ) or ( b1440 and b1441 and b1442 and b1443 ) ) ((RIGHT REMOVE PROTON)) SPMDtex spermidine transport via diffusion (extracellular to periplasm) spmd[e] <==> spmd[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SPMS (SPERMIDINESYN-RXN) spermidine synthase [c] : ametam + ptrc --> 5mta + h + spmd Arginine and Proline Metabolism 2.5.1.16 b0121 ((RIGHT REMOVE PROTON)) SPODM (SUPEROX-DISMUT-RXN) superoxide dismutase [c] : (2) h + (2) o2s --> h2o2 + o2 Unassigned 1.15.1.1 ( b3908 or b1656 ) SPODMpp superoxide dismutase [p] : (2) h + (2) o2s --> h2o2 + o2 Unassigned 1.15.1.1 b1646 SSALx (SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN) succinate-semialdehyde dehydrogenase (NAD) [c] : h2o + nad + sucsal --> (2) h + nadh + succ Arginine and Proline Metabolism 1.2.1.16 ((RIGHT REMOVE PROTON)) SSALy (SUCCSEMIALDDEHYDROG-RXN) succinate-semialdehyde dehydrogenase (NADP) [c] : h2o + nadp + sucsal --> (2) h + nadph + succ Arginine and Proline Metabolism 1.2.1.16 b2661 ((RIGHT REMOVE PROTON)) SUCBZL (O-SUCCINYLBENZOATE-COA-LIG-RXN) o-succinylbenzoate-CoA ligase [c] : atp + coa + sucbz --> amp + ppi + sbzcoa Cofactor and Prosthetic Group Biosynthesis 6.2.1.26 b2260 SUCBZS (O-SUCCINYLBENZOATE-COA-SYN-RXN) O-succinylbenzoate-CoA synthase [c] : 2shchc --> h2o + sucbz Cofactor and Prosthetic Group Biosynthesis b2261 SUCCt2_2pp succinate transport via proton symport (2 H) (periplasm) (2) h[p] + succ[p] --> (2) h[c] + succ[c] "Transport, Inner Membrane" b3528 SUCCt2_3pp Succintate transport via proton symport (3 H) (periplasm) (3) h[p] + succ[p] --> (3) h[c] + succ[c] "Transport, Inner Membrane" ( b4138 or b4123 ) SUCCt3pp succinate transport out via proton antiport (periplasm) h[p] + succ[c] --> h[c] + succ[p] "Transport, Inner Membrane" SUCCtex succinate transport via diffusion (extracellular to periplasm) succ[e] <==> succ[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SUCDi (|SUCCINATE-DEHYDROGENASE-(UBIQUINONE)-RXN|) succinate dehydrogenase (irreversible) [c] : q8 + succ --> fum + q8h2 Update 1.3.99.1 ( b0721 and b0722 and b0723 and b0724 ) (:EXPANDED-RXN-MATCH) SUCFUMtpp (TRANS-RXN-202A) succinate:fumarate antiporter (periplasm) fum[p] + succ[c] <==> fum[c] + succ[p] "Transport, Inner Membrane" ( b4138 or b4123 or b0621 ) SUCOAS (SUCCCOASYN-RXN) succinyl-CoA synthetase (ADP-forming) [c] : atp + coa + succ <==> adp + pi + succoa Citric Acid Cycle 6.2.1.5 ( b0728 and b0729 ) SUCRtex (RXN0-1683) sucrose transport transport via diffusion (extracellular to periplasm) sucr[e] <==> sucr[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) SUCptspp sucrose transport via PEP:Pyr (periplasm) pep[c] + sucr[p] --> pyr[c] + suc6p[c] Putative Transporters ( b2417 and b2429 and b2415 and b2416 ) SULFACabcpp sulfoacetate transport via ABC system (periplasm) atp[c] + h2o[c] + sulfac[p] --> adp[c] + h[c] + pi[c] + sulfac[c] Update ( b0936 and b0933 and b0934 ) SULFACtex sulfoaceate transport via diffusion (extracellular to periplasm) sulfac[e] <==> sulfac[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) SULR (SULFITE-REDUCT-RXN) sulfite reductase (NADPH2) [c] : (3) h2o + h2s + (3) nadp <==> (5) h + (3) nadph + so3 Cysteine Metabolism 1.8.2.2 ( b2763 and b2764 ) ((RIGHT REMOVE PROTON)) SULabcpp (ABC-70-RXN) sulfate transport via ABC system (periplasm) atp[c] + h2o[c] + so4[p] --> adp[c] + h[c] + pi[c] + so4[c] "Transport, Inner Membrane" ( ( b2422 and b2425 and b2424 and b2423 ) or ( b2422 and b2424 and b2423 and b2413 and b3917 ) ) ((RIGHT REMOVE PROTON)) T2DECAI (TRANS-2-DECENOYL-ACP-ISOM-RXN) trans-2-decenoyl-ACP isomerase [c] : tdec2eACP <==> cdec3eACP Cell Envelope Biosynthesis b0954 TAGURr (ALTRO-OXIDOREDUCT-RXN) tagaturonate reductase [c] : altrn + nad <==> h + nadh + tagur Alternate Carbon Metabolism 1.1.1.58 b1521 ((RIGHT REMOVE PROTON)) TALA (TRANSALDOL-RXN) transaldolase [c] : g3p + s7p <==> e4p + f6p Pentose Phosphate Pathway 2.2.1.2 ( b0008 or b2464 ) TARTD (LTARTDEHYDRA-RXN) L(+)-tartrate dehydratase [c] : tartr-L --> h2o + oaa Alternate Carbon Metabolism 4.2.1.32 ( b3061 and b3062 ) TARTRt7pp (TRANS-RXN-127) Tartrate/succinate antiporter (periplasm) succ[c] + tartr-L[p] <==> succ[p] + tartr-L[c] Putative Transporters b3063 TARTRtex Tartrate transport via diffusion (extracellular to periplasm) tartr-L[e] <==> tartr-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TAUDO (RXN0-299) Taurine dioxygenase [c] : akg + o2 + taur --> aacald + co2 + h + so3 + succ Alternate Carbon Metabolism 1.14.11.17 b0368 ((RIGHT REMOVE PROTON)) TAURabcpp (ABC-64-RXN) taurine transport via ABC system (periplasm) atp[c] + h2o[c] + taur[p] --> adp[c] + h[c] + pi[c] + taur[c] "Transport, Inner Membrane" ( b0365 and b0366 and b0367 ) ((RIGHT REMOVE PROTON)) TAURtex taurine transport via diffusion (extracellular to periplasm) taur[e] <==> taur[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TCYNTtex Thiocyanate transport via diffusion (extracellular to periplasm) tcynt[e] <==> tcynt[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TDECOAI tetradecenoyl-coa cis-trans isomerization [c] : tdecoa --> td2coa Membrane Lipid Metabolism 5.3.3.8 b3846 TDPADGAT (TDPFUCACTRANS-RXN) "dTDP-4-amino-4,6-dideoxy-D-glucose acetyltransferase" [c] : accoa + dtdp4addg --> coa + dtdp4aaddg + h Cell Envelope Biosynthesis b3790 ((RIGHT REMOVE PROTON)) TDPAGTA (RFFTRANS-RXN) "dTDP-4-amino-4,6-dideoxy-D-glucose transaminase" [c] : dtdp4d6dg + glu-L --> akg + dtdp4addg Cell Envelope Biosynthesis 2.6.1.33 b3791 TDPDRE (DTDPDEHYDRHAMEPIM-RXN) "dTDP-4-dehydrorhamnose 3,5-epimerase" [c] : dtdp4d6dg --> dtdp4d6dm Cell Envelope Biosynthesis 5.1.3.13 b2038 TDPDRR (DTDPDEHYRHAMREDUCT-RXN) dTDP-4-dehydrorhamnose reductase [c] : dtdp4d6dm + h + nadph --> dtdprmn + nadp Cell Envelope Biosynthesis 1.1.1.133 b2040 ((LEFT REMOVE PROTON)) TDPGDH (DTDPGLUCDEHYDRAT-RXN) "dTDPglucose 4,6-dehydratase" [c] : dtdpglu --> dtdp4d6dg + h2o Cell Envelope Biosynthesis 4.2.1.46 ( b2041 or b3788 ) TDSK (TETRAACYLDISACC4KIN-RXN) Tetraacyldisaccharide 4'kinase [c] : atp + lipidAds --> adp + h + lipidA Lipopolysaccharide Biosynthesis / Recycling 2.7.1.130 b0915 ((RIGHT REMOVE PROTON)) TDSR1 thiol:disulfide reductase (DsbC) dsbcox[p] + dsbdrd[c] --> dsbcrd[p] + dsbdox[c] Update b4136 (:UNMAPPED-CPDS) TDSR2 thiol:disulfide reductase (DsbG) dsbdrd[c] + dsbgox[p] --> dsbdox[c] + dsbgrd[p] Update b4136 (:UNMAPPED-CPDS) TGBPA (TAGAALDOL-RXN) Tagatose-bisphosphate aldolase [c] : tagdp-D <==> dhap + g3p Alternate Carbon Metabolism 4.1.2.40 ( ( b3132 and b3137 ) or ( b2095 and b2096 ) ) THD2pp (1.6.1.2-RXN PYRNUTRANSHYDROGEN-RXN) NAD(P) transhydrogenase (periplasm) (2) h[p] + nadh[c] + nadp[c] --> (2) h[c] + nad[c] + nadph[c] Oxidative Phosphorylation 1.6.1.1 ( b1602 and b1603 ) ((LEFT REMOVE PROTON) (RIGHT REMOVE PROTON)) THDPS (TETHYDPICSUCC-RXN) tetrahydrodipicolinate succinylase [c] : h2o + succoa + thdp --> coa + sl2a6o Threonine and Lysine Metabolism 2.3.1.117 b0166 THIORDXi (RXN0-267) hydrogen peroxide reductase (thioredoxin) [c] : h2o2 + trdrd --> (2) h2o + trdox Update b2480 (:EXPANDED-RXN-MATCH) THMDt2pp (TRANS-RXN-108H) thymidine transport in via proton symport (periplasm) h[p] + thymd[p] --> h[c] + thymd[c] "Transport, Inner Membrane" ( b2393 or b2964 ) THMDt2rpp (TRANS-RXN-108H) "thymidine transport in via proton symport, reversible (periplasm)" h[p] + thymd[p] <==> h[c] + thymd[c] "Transport, Inner Membrane" b2406 THMDtex thymidine transport via diffusion (extracellular to periplasm) thymd[e] <==> thymd[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) THMabcpp (ABC-32-RXN) thiamine transport via ABC system (periplasm) atp[c] + h2o[c] + thm[p] --> adp[c] + h[c] + pi[c] + thm[c] "Transport, Inner Membrane" ( b0068 and b0067 and b0066 ) ((RIGHT REMOVE PROTON)) THMtex Thiamine transport via diffusion (extracellular to periplasm) thm[e] <==> thm[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) THRA2i (LTAA-RXN) L-allo-Threonine Aldolase [c] : athr-L --> acald + gly Update 4.1.2.5 ( b2551 or b0870 ) THRAi (THREONINE-ALDOLASE-RXN) Threonine aldolase [c] : thr-L --> acald + gly Threonine and Lysine Metabolism 4.1.2.5 ( b2551 or b0870 ) (:METACYC) THRD (THREODEHYD-RXN) L-threonine dehydrogenase [c] : nad + thr-L --> 2aobut + h + nadh Glycine and Serine Metabolism 1.1.1.103 b3616 ((RIGHT REMOVE PROTON)) THRD_L (THREDEHYD-RXN) L-threonine deaminase [c] : thr-L --> 2obut + nh4 "Valine, Leucine, and Isoleucine Metabolism" ( b3117 or b1814 or b2797 or b3772 ) ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) THRPtex phospho-L-threonine transport via diffusion (extracellular to periplasm) thrp[e] <==> thrp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) THRS (THRESYN-RXN) threonine synthase [c] : h2o + phom --> pi + thr-L Threonine and Lysine Metabolism 4.2.3.1 b0004 THRTRS (THREONINE--TRNA-LIGASE-RXN) Threonyl-tRNA synthetase [c] : atp + thr-L + trnathr --> amp + ppi + thrtrna Update 6.1.1.3 b1719 THRabcpp L-threonine transport via ABC system (periplasm) atp[c] + h2o[c] + thr-L[p] --> adp[c] + h[c] + pi[c] + thr-L[c] "Transport, Inner Membrane" ( b3454 and b3455 and b3457 and b3460 and b3456 ) THRt2pp (TRANS-RXN-244) L-threonine efflux transport via proton antiport (periplasm) h[p] + thr-L[c] --> h[c] + thr-L[p] "Transport, Inner Membrane" ( b0813 or b3823 ) THRt2rpp (TRANS-RXN-72) L-threonine reversible transport via proton symport (periplasm) h[p] + thr-L[p] <==> h[c] + thr-L[c] "Transport, Inner Membrane" b3116 THRt4pp L-threonine via sodium symport (periplasm) na1[p] + thr-L[p] --> na1[c] + thr-L[c] "Transport, Inner Membrane" b3089 THRtex L-threonine transport via diffusion (extracellular to periplasm) thr-L[e] <==> thr-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) THYMt3pp thymine transport out via proton antiport (periplasm) h[p] + thym[c] --> h[c] + thym[p] "Tansport, Inner Membrane" THYMtex thymine transport via diffusion (extracellular to periplasm) thym[e] <==> thym[p] "Transport, Outer Membrane Porin" ( b1377 or b0929 or b2215 or b0241 ) (:DIFFUSION) THZPSN thiazole phosphate synthesis [c] : atp + cys-L + dxyl5p + tyr-L --> 4hba + 4mpetz + ala-L + amp + co2 + h + h2o + ppi Cofactor and Prosthetic Group Biosynthesis ( b2530 and b3992 and ( b3990 and b3991 ) and b0423 and b4407 ) TKT1 (1TRANSKETO-RXN) transketolase [c] : r5p + xu5p-D <==> g3p + s7p Pentose Phosphate Pathway 2.2.1.1 ( b2935 or b2465 ) TKT2 (2TRANSKETO-RXN) transketolase [c] : e4p + xu5p-D <==> f6p + g3p Pentose Phosphate Pathway 2.2.1.1 ( b2465 or b2935 ) TMAOR1 Trimethylamine N-oxide reductase (menaquinol 8) [c] : h + mql8 + tmao --> h2o + mqn8 + tma Oxidative Phosphorylation ( ( b0894 and b0895 and b0896 ) or ( b1587 and b1588 and b1589 and b1590 ) ) TMAOR1pp Trimethylamine N-oxide reductase (menaquinol 8) (periplasm) h[p] + mql8[c] + tmao[p] --> h2o[p] + mqn8[c] + tma[p] Oxidative Phosphorylation ( ( b1872 and b1873 ) or ( b0996 and b0997 ) ) TMAOR2 Trimethylamine N-oxide reductase (demethylmenaquinol 8) [c] : 2dmmql8 + h + tmao --> 2dmmq8 + h2o + tma Oxidative Phosphorylation ( b0894 and b0895 and b0896 ) TMAOR2pp Trimethylamine N-oxide reductase (demethylmenaquinol 8) (periplasm) 2dmmql8[c] + h[p] + tmao[p] --> 2dmmq8[c] + h2o[p] + tma[p] Oxidative Phosphorylation ( ( b1872 and b1873 ) or ( b0996 and b0997 ) ) TMAOtex Trimethylamine N-oxide transport via diffusion (extracellular to periplasm) tmao[e] <==> tmao[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TMAtex Trimethylamine transport via diffusion (extracellular to periplasm) tma[e] <==> tma[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TMDK1 (THYKI-RXN) thymidine kinase (ATP:thymidine) [c] : atp + thymd --> adp + dtmp + h Nucleotide Salvage Pathway 2.7.1.21 b1238 ((RIGHT REMOVE PROTON)) TMDPP (THYM-PHOSPH-RXN) thymidine phosphorylase [c] : pi + thymd <==> 2dr1p + thym Nucleotide Salvage Pathway 2.4.2.4 b4382 TMDS (THYMIDYLATESYN-RXN) thymidylate synthase [c] : dump + mlthf --> dhf + dtmp Nucleotide Salvage Pathway 2.1.1.45 b2827 TMK (THIKIN-RXN) thiamine kinase [c] : atp + thm --> adp + h + thmmp Cofactor and Prosthetic Group Biosynthesis 2.7.1.89 b1106 ((RIGHT REMOVE PROTON)) TMPK (THI-P-KIN-RXN) thiamine-phosphate kinase [c] : atp + thmmp --> adp + thmpp Cofactor and Prosthetic Group Biosynthesis 2.7.4.16 b0417 TMPPP (THI-P-SYN-RXN) thiamine-phosphate diphosphorylase [c] : 2mahmp + 4mpetz + h --> ppi + thmmp Cofactor and Prosthetic Group Biosynthesis 2.5.1.3 b3993 ((LEFT REMOVE PROTON)) TPI (TRIOSEPISOMERIZATION-RXN) triose-phosphate isomerase [c] : dhap <==> g3p Glycolysis/Gluconeogenesis 5.3.1.1 b3919 TPRDCOAS (RXN0-309) triphosphoribosyl-dephospho-CoA synthase [c] : atp + dpcoa --> 2tpr3dpcoa + ade Update b0613 TRDR (THIOREDOXIN-REDUCT-NADPH-RXN) thioredoxin reductase (NADPH) [c] : h + nadph + trdox --> nadp + trdrd Oxidative Phosphorylation 1.8.1.9 b0888 (:EXPANDED-RXN-MATCH) TRE6PH (TRE6PHYDRO-RXN) trehalose-6-phosphate hydrolase [c] : h2o + tre6p --> g6p + glc-D Alternate Carbon Metabolism 3.2.1.93 b4239 TRE6PP (TREHALOSEPHOSPHA-RXN) trehalose-phosphatase [c] : h2o + tre6p --> pi + tre Alternate Carbon Metabolism 3.1.3.12 b1897 TRE6PS "alpha,alpha-trehalose-phosphate synthase (UDP-forming)" [c] : g6p + udpg --> h + tre6p + udp Alternate Carbon Metabolism 2.4.1.15 b1896 TREH (TREHALA-RXN) "alpha,alpha-trehalase" [c] : h2o + tre --> (2) glc-D Alternate Carbon Metabolism 3.2.1.28 b3519 TREHpp "alpha,alpha-trehalase (periplasm)" [p] : h2o + tre --> (2) glc-D Alternate Carbon Metabolism 3.2.1.28 b1197 TREptspp (TRANS-RXN-168) trehalose transport via PEP:Pyr PTS (periplasm) pep[c] + tre[p] --> pyr[c] + tre6p[c] "Transport, Inner Membrane" ( b2417 and b2415 and b2416 and b4240 ) TREtex (RXN0-1683) trehalose transport via diffusion (extracellular to periplasm) tre[e] <==> tre[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) TRPAS2 (TRYPTOPHAN-RXN) Tryptophanase (L-tryptophan) [c] : h2o + trp-L <==> indole + nh4 + pyr "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.1.99.1 b3708 ((RIGHT SUBSTITUTE AMMONIA AMMONIUM)) TRPS1 (TRYPSYN-RXN) tryptophan synthase (indoleglycerol phosphate) [c] : 3ig3p + ser-L --> g3p + h2o + trp-L "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.2.1.20 ( b1260 and b1261 ) TRPS2 (RXN0-2382) tryptophan synthase (indole) [c] : indole + ser-L --> h2o + trp-L "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.2.1.20 ( b1260 and b1261 ) TRPS3 (RXN0-2381) tryptophan synthase (indoleglycerol phosphate) [c] : 3ig3p --> g3p + indole "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 4.2.1.20 ( b1260 and b1261 ) TRPTRS (TRYPTOPHAN--TRNA-LIGASE-RXN) Tryptophanyl-tRNA synthetase [c] : atp + trnatrp + trp-L --> amp + ppi + trptrna Update 6.1.1.2 b3384 TRPt2rpp (TRANS-RXN-76) L-tryptophan reversible transport via proton symport (periplasm) h[p] + trp-L[p] <==> h[c] + trp-L[c] "Transport, Inner Membrane" ( b3161 or b3709 or b0112 ) TRPtex L-tryptophan transport via diffusion (extracellular to periplasm) trp-L[e] <==> trp-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TRSARr (TSA-REDUCT-RXN) tartronate semialdehyde reductase [c] : 2h3oppan + h + nadh <==> glyc-R + nad Alternate Carbon Metabolism 1.1.1.60 ( b0509 or b3125 ) (:EXPANDED-RXN-MATCH) TSULabcpp (ABC-7-RXN) thiosulfate transport via ABC system (periplasm) atp[c] + h2o[c] + tsul[p] --> adp[c] + h[c] + pi[c] + tsul[c] "Transport, Inner Membrane" ( ( b2422 and b2425 and b2424 and b2423 ) or ( b2422 and b2424 and b2423 and b3917 ) ) ((RIGHT REMOVE PROTON)) TSULtex thiosulfate transport via diffusion (extracellular to periplasm) tsul[e] <==> tsul[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) ttdca[e] --> ttdca[p] "Transport, Outer Membrane" b2344 (:UNMAPPED-CPDS) TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) ttdcea[e] --> ttdcea[p] "Transport, Outer Membrane" b2344 (:UNMAPPED-CPDS) TUNGSabcpp tungstate transport via ABC system (periplasm) atp[c] + h2o[c] + tungs[p] --> adp[c] + h[c] + pi[c] + tungs[c] "Transport, Inner Membrane" ( b0763 and b0764 and b0765 and b0760 ) TUNGStex tungstate transport via diffusion (extracellular to periplasm) tungs[p] <==> tungs[c] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TYMtex tyramine transport via diffusion (extracellular to periplasm) tym[e] <==> tym[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) [p] : h2o + o2 + tym --> 4hoxpacd + h2o2 + nh4 Update 1.4.3.6 b1386 TYRPpp phospho-L-tyrosine phosphatase (periplasmic) [p] : h2o + tyrp --> pi + tyr-L Update b4055 TYRPtex phopho-L-tyrosine transport via diffusion (extracellular to periplasm) tyrp[e] <==> tyrp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) TYRTA (TYRAMINOTRANS-RXN) tyrosine transaminase [c] : akg + tyr-L <==> 34hpp + glu-L "Tyrosine, Tryptophan, and Phenylalanine Metabolism" 2.6.1.5 ( b4054 or b0928 ) TYRTRS (TYROSINE--TRNA-LIGASE-RXN) tyrosyl-tRNA synthetase [c] : atp + trnatyr + tyr-L --> amp + ppi + tyrtrna Update 6.1.1.1 b1637 TYRt2rpp (TRANS-RXN-77) L-tyrosine reversible transport via proton symport (periplasm) h[p] + tyr-L[p] <==> h[c] + tyr-L[c] "Transport, Inner Membrane" ( b0112 or b0576 or b1907 ) TYRtex L-tyrosine transport via diffusion (extracellular to periplasm) tyr-L[e] <==> tyr-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) U23GAAT (UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN) UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase [c] : 3hmrsACP + u3hga --> ACP + h + u23ga Lipopolysaccharide Biosynthesis / Recycling b0179 ((RIGHT REMOVE PROTON)) UAAGDS (UDP-NACMURALGLDAPLIG-RXN) "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase" [c] : 26dap-M + atp + uamag --> adp + h + pi + ugmd Cell Envelope Biosynthesis 6.3.2.13 b0085 ((RIGHT REMOVE PROTON)) UACGALPpp UDP-N-acetyl-D-galactosamine pyrophosphohydrolase (periplasm) [p] : h2o + udpacgal --> acgal1p + (2) h + ump Update 3.6.1.45 b0480 UACGAMPpp UDP-N-acetyl-D-glucosamine pyrophosphohydrolase (periplasm) [p] : h2o + uacgam --> acgam1p + (2) h + ump Update 3.6.1.45 b0480 UACGAMtex UDP-N-acetyl-D-glucosamine transport via diffusion (extracellular to periplasm) uacgam[e] <==> uacgam[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UACMAMO (UDPMANNACADEHYDROG-RXN) UDP-N-acetyl-D-mannosamine oxidoreductase [c] : h2o + (2) nad + uacmam --> (3) h + (2) nadh + uacmamu Cell Envelope Biosynthesis b3787 UAG2E (UDPGLCNACEPIM-RXN) UDP-N-acetylglucosamine 2-epimerase [c] : uacgam <==> uacmam Cell Envelope Biosynthesis 5.1.3.14 b3786 UAGAAT (UDPNACETYLGLUCOSAMACYLTRANS-RXN) UDP-N-acetylglucosamine acyltransferase [c] : 3hmrsACP + uacgam <==> ACP + u3aga Lipopolysaccharide Biosynthesis / Recycling 2.3.1.129 b0181 UAGCVT (UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN) UDP-N-acetylglucosamine 1-carboxyvinyltransferase [c] : pep + uacgam --> pi + uaccg Cell Envelope Biosynthesis 2.5.1.7 b3189 UAGDP (NAG1P-URIDYLTRANS-RXN) UDP-N-acetylglucosamine diphosphorylase [c] : acgam1p + h + utp --> ppi + uacgam Cell Envelope Biosynthesis 2.7.7.23 b3730 ((LEFT REMOVE PROTON)) UAGPT3 (NACGLCTRANS-RXN) UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [c] : uacgam + uagmda --> h + uaagmda + udp Cell Envelope Biosynthesis b0090 (:EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) UAMAGS (UDP-NACMURALA-GLU-LIG-RXN) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [c] : atp + glu-D + uama --> adp + h + pi + uamag Cell Envelope Biosynthesis 6.3.2.9 b0088 ((RIGHT REMOVE PROTON)) UAMAS (UDP-NACMUR-ALA-LIG-RXN) UDP-N-acetylmuramoyl-L-alanine synthetase [c] : ala-L + atp + uamr --> adp + h + pi + uama Cell Envelope Biosynthesis 6.3.2.8 b0091 ((RIGHT REMOVE PROTON)) UAPGR (UDPNACETYLMURAMATEDEHYDROG-RXN) UDP-N-acetylenolpyruvoylglucosamine reductase [c] : h + nadph + uaccg --> nadp + uamr Cell Envelope Biosynthesis 1.1.1.158 b3972 ((LEFT REMOVE PROTON)) UDCPDP (UNDECAPRENYL-DIPHOSPHATASE-RXN) undecaprenyl-diphosphatase [c] : h2o + udcpdp --> h + pi + udcpp Cell Envelope Biosynthesis 3.6.1.27 ( b3057 or b0841 or b1278 ) ((RIGHT REMOVE PROTON)) UDCPDPS Undecaprenyl diphosphate synthase [c] : frdp + (8) ipdp --> (8) ppi + udcpdp Cofactor and Prosthetic Group Biosynthesis b0174 UDCPDPpp undecaprenyl-diphosphatase (periplasm) [p] : h2o + udcpdp --> h + pi + udcpp Cell Envelope Biosynthesis 3.6.1.27 ( b3057 or b1278 or b0841 ) UDCPPtppi undecaprenyl phosphate transport (cytoplasm to periplasm) udcpp[p] --> udcpp[c] Lipopolysaccharide Biosynthesis / Recycling (:DIFFUSION) UDPACGALtex UDP-N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm) udpacgal[e] <==> udpacgal[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UDPG4E (UDPGLUCEPIM-RXN) UDPglucose 4-epimerase [c] : udpg <==> udpgal Alternate Carbon Metabolism 5.1.3.2 b0759 UDPGALM (GALPMUT-RXN) UDPgalactopyranose mutase [c] : udpgal --> udpgalfur Cell Envelope Biosynthesis 5.4.99.9 b2036 UDPGALPpp UDPgalactose pyrophosphohydrolase [p] : h2o + udpgal --> gal1p + (2) h + ump Update 3.6.1.45 b0480 UDPGALtex UDPgalactose transport via diffusion (extracellular to periplasm) udpgal[e] <==> udpgal[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UDPGD (UGD-RXN) UDPglucose 6-dehydrogenase [c] : h2o + (2) nad + udpg --> (3) h + (2) nadh + udpglcur Cell Envelope Biosynthesis 1.1.1.22 b2028 ((RIGHT REMOVE PROTON)) UDPGDC (RXN0-1861) UDP-glucuronate C-4'' decarboxylase [c] : nad + udpglcur --> co2 + nadh + udpLa4o Lipopolysaccharide Biosynthesis / Recycling b2255 UDPGLCURtex UDP-D-glucuronate transport via diffusion (extracellular to periplasm) udpglcur[e] <==> udpglcur[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UDPGPpp UDPglucose pyrophosphohydrolase [p] : h2o + udpg --> g1p + (2) h + ump Update 3.6.1.45 b0480 UDPGtex UDPglucose transport via diffusion (extracellular to periplasm) udpg[e] <==> udpg[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UDPKAAT (RXN0-1863) UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase [c] : glu-L + udpLa4o <==> akg + udpLa4n Lipopolysaccharide Biosynthesis / Recycling b2253 UGLCURPpp UDP-D-glucuronate pyrophosphohydrolase (periplasm) [p] : h2o + udpglcur --> glcur1p + (2) h + ump Update 3.6.1.45 b0480 UGLT (GALACTURIDYLYLTRANS-RXN) UDPglucose--hexose-1-phosphate uridylyltransferase [c] : gal1p + udpg <==> g1p + udpgal Alternate Carbon Metabolism 2.7.7.12 b0758 UGLYCH (UREIDOGLYCOLATE-HYDROLASE-RXN) Ureidoglycolate hydrolase [c] : (2) h + h2o + urdglyc --> co2 + glx + (2) nh4 Nitrogen Metabolism 3.5.3.19 b0505 ((LEFT REMOVE PROTON) (RIGHT SUBSTITUTE AMMONIA AMMONIUM)) UGMDDS (UDP-NACMURALGLDAPAALIG-RXN) "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase" [c] : alaala + atp + ugmd --> adp + h + pi + ugmda Cell Envelope Biosynthesis 6.3.2.15 b0086 (:EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) UHGADA (UDPACYLGLCNACDEACETYL-RXN) UDP-3-O-acetylglucosamine deacetylase [c] : h2o + u3aga --> ac + u3hga Lipopolysaccharide Biosynthesis / Recycling b0096 ULA4NFT (RXN0-1862) UDP-L-Ara4N formyltransferase [c] : 10fthf + udpLa4n --> h + thf + udpLa4fn Lipopolysaccharide Biosynthesis / Recycling b2255 ((RIGHT REMOVE PROTON)) ULA4Ntppi transport (cytoplasm to periplasm) uLa4n[c] --> uLa4n[p] Lipopolysaccharide Biosynthesis / Recycling (:UNMAPPED-CPDS) UM3PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat e ligase [c] : LalaDgluMdap + uamr --> h2o + ugmd Murein Recycling b4233 UM4PCP "UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase" [c] : h2o + um4p --> ala-D + ugmd Murein Recycling b1192 UM4PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase [c] : LalaDgluMdapDala + uamr --> h2o + um4p Murein Recycling b4233 (:UNMAPPED-CPDS) UMPK (UMPKI-RXN) UMP kinase [c] : atp + ump <==> adp + udp Nucleotide Salvage Pathway 2.7.4.14 ( b0910 or b0171 ) UMPtex UMP transport via diffusion (extracellular to periplasm) ump[e] <==> ump[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UNK3 2-keto-4-methylthiobutyrate transamination [c] : 2kmb + glu-L --> akg + met-L Arginine and Proline Metabolism UPLA4FNF undecaprenyl phosphate-L-Ara4FN formylase [c] : h2o + uLa4fn --> for + uLa4n Lipopolysaccharide Biosynthesis / Recycling (:UNMAPPED-CPDS) UPLA4FNT undecaprenyl phosphate-L-Ara4FN transferase [c] : udcpp + udpLa4fn --> uLa4fn + udp Lipopolysaccharide Biosynthesis / Recycling b2254 UPP3MT (UROPORIIIMETHYLTRANSA-RXN) uroporphyrinogen methyltransferase [c] : (2) amet + uppg3 --> (2) ahcys + dscl + h Cofactor and Prosthetic Group Biosynthesis 2.1.1.107 ( b3803 or b3368 ) ((RIGHT REMOVE PROTON)) UPP3S (UROGENIIISYN-RXN) uroporphyrinogen-III synthase [c] : hmbil --> h2o + uppg3 Cofactor and Prosthetic Group Biosynthesis 4.2.1.75 b3804 UPPDC1 (UROGENDECARBOX-RXN) uroporphyrinogen decarboxylase (uroporphyrinogen III) [c] : (4) h + uppg3 --> (4) co2 + cpppg3 Cofactor and Prosthetic Group Biosynthesis 4.1.1.37 b3997 ((LEFT REMOVE PROTON)) UPPRT (URACIL-PRIBOSYLTRANS-RXN) uracil phosphoribosyltransferase [c] : prpp + ura --> ppi + ump Nucleotide Salvage Pathway 2.4.2.9 b2498 URAt2pp (TRANS-RXN-132) uracil transport in via proton symport (periplasm) h[p] + ura[p] --> h[c] + ura[c] "Transport, Inner Membrane" b2497 URAt2rpp (TRANS-RXN-132) "uracil transport in via proton symport, reversible (periplasm)" h[p] + ura[p] <==> h[c] + ura[c] Putative Transporters b1006 URAtex uracil transport via diffusion (extracellular to periplasm) ura[e] <==> ura[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) URDGLYCD (R165-RXN) ureidoglycolate dehydrogenase [c] : nad + urdglyc --> h + nadh + oxur Update 1.1.1.154 b0517 (:EXPANDED-RXN-MATCH (RIGHT REMOVE PROTON)) UREAtex Urea transport via diffusion (extracellular to periplasm) urea[e] <==> urea[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) UREAtpp Urea transport via facilitate diffusion (periplasm) urea[p] <==> urea[c] "Transport, Inner Membrane" b3927 (:DIFFUSION) URIC uricase [c] : (2) h2o + o2 + urate --> alltn + co2 + h2o2 Update 1.7.3.3 URIDK2r (|(DEOXY)NUCLEOSIDE-PHOSPHATE-KINASE-RXN|) uridylate kinase (dUMP) [c] : atp + dump <==> adp + dudp Nucleotide Salvage Pathway b0171 (:METACYC :EXPANDED-RXN-MATCH) URIH (URIDINE-NUCLEOSIDASE-RXN) Uridine hydrolase [c] : h2o + uri --> rib-D + ura Update 3.2.2.8 ( b2162 or b0651 or b0030 ) URIK2 (URKI-RXN) uridine kinase (GTP:Uridine) [c] : gtp + uri --> gdp + h + ump Nucleotide Salvage Pathway 2.7.1.48 b2066 ((RIGHT REMOVE PROTON)) URIt2pp (TRANS-RXN-108I) uridine transport in via proton symport (periplasm) h[p] + uri[p] --> h[c] + uri[c] "Transport, Inner Membrane" ( b2393 or b2964 ) URIt2rpp (TRANS-RXN-108I) "uridine transport in via proton symport, reversible (periplasm)" h[p] + uri[p] <==> h[c] + uri[c] "Transport, Inner Membrane" b2406 URItex uridine transport via diffusion (extracellular to periplasm) uri[e] <==> uri[p] "Transport, Outer Membrane" b0411 (:DIFFUSION) USHD (LIPIDXSYNTHESIS-RXN) UDP-sugar hydrolase [c] : h2o + u23ga --> (2) h + lipidX + ump Lipopolysaccharide Biosynthesis / Recycling b0524 ((RIGHT REMOVE PROTON)) VALTA (BRANCHED-CHAINAMINOTRANSFERVAL-RXN) valine transaminase [c] : akg + val-L <==> 3mob + glu-L "Valine, Leucine, and Isoleucine Metabolism" 2.6.1.42 b3770 VALTRS (VALINE--TRNA-LIGASE-RXN) Valyl-tRNA synthetase [c] : atp + trnaval + val-L --> amp + ppi + valtrna Update 6.1.1.9 b4258 VALabcpp (ABC-36-RXN) L-valine transport via ABC system (periplasm) atp[c] + h2o[c] + val-L[p] --> adp[c] + h[c] + pi[c] + val-L[c] "Transport, Inner Membrane" ( b3454 and b3455 and b3457 and b3460 and b3456 ) ((RIGHT REMOVE PROTON)) VALt2rpp L-valine reversible transport via proton symport (periplasm) h[p] + val-L[p] <==> h[c] + val-L[c] "Transport, Inner Membrane" b0401 VALtex L-valine transport via diffusion (extracellular to periplasm) val-L[e] <==> val-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) VPAMT (VALINE-PYRUVATE-AMINOTRANSFER-RXN) Valine-pyruvate aminotransferase [c] : 3mob + ala-L --> pyr + val-L Alanine and Aspartate Metabolism 2.6.1.66 b3572 X5PL3E (LXULRU5P-RXN) L-xylulose 5-phosphate 3-epimerase [c] : xu5p-L --> ru5p-L Alternate Carbon Metabolism b4197 XAND (RXN0-901) xanthine dehydrogenase [c] : h2o + nad + xan --> h + nadh + urate Update 1.1.1.204 ( b2866 and b2867 and b2868 ) XANt2pp xanthine transport in via proton symport (periplasm) h[p] + xan[p] --> h[c] + xan[c] Putative Transporters b3654 XANtex xanthine transport via diffusion (extracellular to periplasm) xan[e] <==> xan[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) XANtpp xanthine reversible transport (periplasm) xan[p] <==> xan[c] "Transport, Inner Membrane" (:DIFFUSION) XMPtex XMP transport via diffusion (extracellular to periplasm) xmp[e] <==> xmp[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) XPPT (XANPRIBOSYLTRAN-RXN) xanthine phosphoribosyltransferase [c] : prpp + xan --> ppi + xmp Nucleotide Salvage Pathway 2.4.2.22 b0238 XTSNH (RXN0-363) Xanthosine hydrolase [c] : h2o + xtsn --> rib-D + xan Update 3.2.2.8 b0030 XTSNt2rpp (TRANS-RXN-31) Xanthosine transport via proton symport (periplasm) h[p] + xtsn[p] <==> h[c] + xtsn[c] "Transport, Inner Membrane" b2406 XTSNtex xanthosine transport via diffusion (extracellular to periplasm) xtsn[e] <==> xtsn[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:DIFFUSION) XYLI1 (XYLISOM-RXN) xylose isomerase [c] : xyl-D <==> xylu-D Alternate Carbon Metabolism 5.3.1.5 b3565 XYLI2 (GLUCISOM-RXN) xylose isomerase [c] : glc-D <==> fru Update 5.3.1.5 b3565 (:METACYC) XYLK (XYLULOKIN-RXN) xylulokinase [c] : atp + xylu-D --> adp + h + xu5p-D Alternate Carbon Metabolism 2.7.1.17 ( b3564 or b0063 ) ((RIGHT REMOVE PROTON)) XYLK2 (LYXK-RXN) L-xylulokinase [c] : atp + xylu-L --> adp + h + xu5p-L Update 2.7.1.53 ( b0063 or b3580 ) ((RIGHT REMOVE PROTON)) XYLUt2pp L-xylulose transport in via proton symport (periplasm) h[p] + xylu-L[p] --> h[c] + xylu-L[c] Update ( b3577 and b3578 and b3579 ) XYLUtex (RXN0-1683) L-xylulose transport via diffusion (extracellular to periplasm) xylu-L[e] <==> xylu-L[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) XYLabcpp (ABC-33-RXN) D-xylose transport via ABC system (periplasm) atp[c] + h2o[c] + xyl-D[p] --> adp[c] + h[c] + pi[c] + xyl-D[c] "Transport, Inner Membrane" ( b3566 and b3567 and b3568 ) ((RIGHT REMOVE PROTON)) XYLt2pp (TRANS-RXN-30) D-xylose transport in via proton symport (periplasm) h[p] + xyl-D[p] --> h[c] + xyl-D[c] "Transport, Inner Membrane" b4031 XYLtex (RXN0-1683) D-xylose transport via diffusion (extracellular to periplasm) xyl-D[e] <==> xyl-D[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 ) (:EXPANDED-RXN-MATCH) ZN2abcpp (3.6.3.5-RXN) Zinc (Zn+2) ABC transporter (periplasm) atp[c] + h2o[c] + zn2[c] --> adp[c] + h[c] + pi[c] + zn2[p] "Transport, Inner Membrane" b3469 (:METACYC (RIGHT REMOVE PROTON)) ZN2tpp zinc transport in/out via permease (no H+) zn2[p] <==> zn2[c] "Transport, Inner Membrane" b3040 (:DIFFUSION) ZNabcpp (ABC-63-RXN) zinc (Zn+2) transport via ABC system (periplasm) atp[c] + h2o[c] + zn2[p] --> adp[c] + h[c] + pi[c] + zn2[c] "Transport, Inner Membrane" ( b1857 and b1859 and b1858 ) ((RIGHT REMOVE PROTON)) ZNt3pp (TRANS-RXN-200) zinc (Zn+2) transport out via proton antiport (periplasm) h[p] + zn2[c] --> h[c] + zn2[p] "Tranpsort, Inner Membrane" b0752 Zn2tex zinc (Zn+2) transport via diffusion (extracellular to periplasm) zn2[e] <==> zn2[p] "Transport, Outer Membrane Porin" ( b0241 or b0929 or b1377 or b2215 (:DIFFUSION)