Data from Palsson Lab																							
abbreviation   	officialName   	formula        	charge	casNumber   																			
10fthf	10-Formyltetrahydrofolate	C20H21N7O7	-2																				
12dgr120	"1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)"	C27H52O5	0																				
12dgr140	"1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)"	C31H60O5	0																				
12dgr141	"1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)"	C31H56O5	0																				
12dgr160	"1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)"	C35H68O5	0																				
12dgr161	"1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)"	C35H64O5	0																				
12dgr180	"1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)"	C39H76O5	0																				
12dgr181	"1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)"	C39H72O5	0																				
12ppd-R	"(R)-Propane-1,2-diol"	C3H8O2	0	4254-14-2																			
12ppd-S	"(S)-Propane-1,2-diol"	C3H8O2	0	4254-14-3																			
13dpg	3-Phospho-D-glyceroyl phosphate	C3H4O10P2	-4	None																			
14glucan	"1,4-alpha-D-glucan"	C36H62O31	0																				
15dap	"1,5-Diaminopentane"	C5H16N2	2	462-94-2																			
1agpe120	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)	C17H36NO7P1	0																				
1agpe140	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)	C19H40NO7P1	0
1agpe141	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)	C19H38NO7P1	0
1agpe160	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)	C21H44NO7P1	0
1agpe161	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)	C21H42NO7P1	0
1agpe180	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)	C23H48NO7P1	0
1agpe181	1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)	C23H46NO7P1	0
1agpg120	1-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)	C18H36O9P1	-1
1agpg140	1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)	C20H40O9P1	-1
1agpg141	1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)	C20H38O9P1	-1
1agpg160	1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)	C22H44O9P1	-1
1agpg161	1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)	C22H42O9P1	-1
1agpg180	1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)	C24H48O9P1	-1
1agpg181	1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)	C24H46O9P1	-1
1ddecg3p	1-dodecanoyl-sn-glycerol 3-phosphate	C15H29O7P1	-2
1hdec9eg3p	1-hexadec-9-enoyl-sn-glycerol 3-phosphate	C19H35O7P1	-2
1hdecg3p	1-hexadecanoyl-sn-glycerol 3-phosphate	C19H37O7P1	-2
1odec11eg3p	1-octadec-11-enoyl-sn-glycerol 3-phosphate	C21H39O7P1	-2	
1odecg3p	1-octadecanoyl-sn-glycerol 3-phosphate	C21H41O7P1	-2	
1pyr5c	1-Pyrroline-5-carboxylate	C5H6NO2	-1	
1tdec7eg3p	1-tetradec-7-enoyl-sn-glycerol 3-phosphate	C17H31O7P1	-2	
1tdecg3p	1-tetradecanoyl-sn-glycerol 3-phosphate	C17H33O7P1	-2	
23camp	"2',3'-Cyclic AMP"	C10H11N5O6P	-1	
23ccmp	"2',3'-Cyclic CMP"	C9H11N3O7P	-1	
23cgmp	"2',3'-Cyclic GMP"	C10H11N5O7P	-1	
23cump	"2',3'-Cyclic UMP"	C9H10N2O8P	-1	
23dappa	"2,3-diaminopropionate"	C3H9N2O2	1	
23ddhb	"2,3-Dihydro-2,3-dihydroxybenzoate"	C7H7O4	-1	
23dhb	"2,3-Dihydroxybenzoate"	C7H5O4	-1	303-38-8
23dhba	"(2,3-Dihydroxybenzoyl)adenylate"	C17H17N5O10P	-1	
23dhbzs	"2,3-dihydroxybenzoylserine"	C10H10NO6	-1	
23dhdp	"2,3-Dihydrodipicolinate"	C7H5NO4	-2	
23dhmb	"(R)-2,3-Dihydroxy-3-methylbutanoate"	C5H9O4	-1	
23dhmp	"(R)-2,3-Dihydroxy-3-methylpentanoate"	C6H11O4	-1	
23doguln	"2,3-Dioxo-L-gulonate"	C6H7O7	-1	
25aics	(S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate	C13H15N4O12P	-4	
25dkglcn	"2,5-diketo-D-gluconate"	C6H7O7	-1	
25drapp	"2,5-Diamino-6-(ribosylamino)-4-(3H)-pyrimidinone 5'-phosphate"	C9H14N5O8P	-2	
26dap-LL	"LL-2,6-Diaminoheptanedioate"	C7H14N2O4	0	583-93-7
26dap-M	"meso-2,6-Diaminoheptanedioate"	C7H14N2O4	0	None
2agpe120	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)	C17H36NO7P1	0	
2agpe140	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)	C19H40NO7P1	0	
2agpe141	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)	C19H38NO7P1	0	
2agpe160	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)	C21H44NO7P1	0	
2agpe161	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)	C21H42NO7P1	0	
2agpe180	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)	C23H48NO7P1	0	
2agpe181	2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)	C23H46NO7P1	0	
2agpg120	2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)	C18H36O9P1	-1	
2agpg140	2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)	C20H40O9P1	-1	
2agpg141	2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)	C20H38O9P1	-1	
2agpg160	2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)	C22H44O9P1	-1	
2agpg161	2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)	C22H42O9P1	-1	
2agpg180	2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)	C24H48O9P1	-1	
2agpg181	2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)	C24H46O9P1	-1	
2ahbut	(S)-2-Aceto-2-hydroxybutanoate	C6H9O4	-1	
2amsa	2-Aminomalonate semialdehyde	C3H5NO3	0	
2aobut	L-2-Amino-3-oxobutanoate	C4H7NO3	0	
2cpr5p	1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	C12H13NO9P	-3	
2dda7p	2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate	C7H10O10P	-3	
2ddecg3p	2-dodecanoyl-sn-glycerol 3-phosphate	C15H29O7P1	-2	
2ddg6p	2-Dehydro-3-deoxy-D-gluconate 6-phosphate	C6H8O9P	-3	
2ddglcn	2-Dehydro-3-deoxy-D-gluconate	C6H9O6	-1	None
2dh3dgal	2-Dehydro-3-deoxy-D-galactonate	C6H9O6	-1	
2dh3dgal6p	2-Dehydro-3-deoxy-D-galactonate 6-phosphate	C6H8O9P	-3	
2dhglcn	2-Dehydro-D-gluconate	C6H9O7	-1	
2dhguln	2-Dehydro-L-gulonate	C6H9O7	-1	
2dhp	2-Dehydropantoate	C6H9O4	-1	
2dmmq8	2-Demethylmenaquinone 8	C50H70O2	0	
2dmmql8	2-Demethylmenaquinol 8	C50H72O2	0	
2dr1p	2-Deoxy-D-ribose 1-phosphate	C5H9O7P	-2	
2dr5p	2-Deoxy-D-ribose 5-phosphate	C5H9O7P	-2	102916-66-5
2h3oppan	2-Hydroxy-3-oxopropanoate	C3H3O4	-1	
2hdec9eg3p	2-hexadec-9-enoyl-sn-glycerol 3-phosphate	C19H35O7P1	-2	
2hdecg3p	2-hexadecanoyl-sn-glycerol 3-phosphate	C19H37O7P1	-2	
2ippm	2-Isopropylmaleate	C7H8O4	-2	
2kmb	2-keto-4-methylthiobutyrate	C5H7O3S	-1	
2mahmp	2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate	C6H8N3O7P2	-3	745-65-3
2mcacn	cis-2-Methylaconitate	C7H5O6	-3	99-98-9
2mcit	2-Methylcitrate	C7H7O7	-3	96-17-3
2me4p	2-C-methyl-D-erythritol 4-phosphate	C5H11O7P	-2	
2mecdp	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate"	C5H10O9P2	-2	
2obut	2-Oxobutanoate	C4H5O3	-1	600-18-0
2odec11eg3p	2-octadec-11-enoyl-sn-glycerol 3-phosphate	C21H39O7P1	-2	
2odecg3p	2-octadecanoyl-sn-glycerol 3-phosphate	C21H41O7P1	-2	
2ohph	2-Octaprenyl-6-hydroxyphenol	C46H70O2	0	
2ombzl	"2-Octaprenyl-6-methoxy-1,4-benzoquinol"	C47H72O3	0	
2omhmbl	"2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol"	C48H74O4	0	
2ommbl	"2-Octaprenyl-3-methyl-6-methoxy- 1,4-benzoquinol"	C48H74O3	0	
2omph	2-Octaprenyl-6-methoxyphenol	C47H72O2	0	
2oph	2-Octaprenylphenol	C46H70O	0	
2p4c2me	2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol	C14H22N3O17P3	-4	
2pg	D-Glycerate 2-phosphate	C3H4O7P	-3	
2pglyc	2-Phosphoglycolate	C2H2O6P	-3	
2shchc	"2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate"	C11H10O6	-2	
2tdec7eg3p	2-tetradec-7-enoyl-sn-glycerol 3-phosphate	C17H31O7P1	-2	
2tdecg3p	2-tetradecanoyl-sn-glycerol 3-phosphate	C17H33O7P1	-2	
2tpr3dpcoa	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA	C26H40N7O26P5S	-6	
34dhpac	"3,4-Dihydroxyphenylacetaldehyde"	C8H8O3	0	
34hpp	3-(4-Hydroxyphenyl)pyruvate	C9H7O4	-1	
3amp	3'-AMP	C10H12N5O7P	-2	84-21-9
3c2hmp	3-Carboxy-2-hydroxy-4-methylpentanoate	C7H10O5	-2	
3c3hmp	3-Carboxy-3-hydroxy-4-methylpentanoate	C7H10O5	-2	
3c4mop	3-Carboxy-4-methyl-2-oxopentanoate	C7H8O5	-2	
3cmp	3'-cmp	C9H12N3O8P	-2	
3dhguln	3-Dehydro-L-gulonate	C6H9O7	-1	
3dhgulnp	3-keto-L-gulonate-6-phosphate	C6H8O10P	-3	
3dhq	3-Dehydroquinate	C7H9O6	-1	
3dhsk	3-Dehydroshikimate	C7H7O5	-1	
3gmp	3'-GMP	C10H12N5O8P	-2	
3haACP	(3R)-3-Hydroxyacyl-[acyl-carrier protein]	C15H27N2O9PRS	-1	
3hbcoa	(S)-3-Hydroxybutanoyl-CoA	C25H38N7O18P3S	-4	
3hcddec5eACP	(R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]	C23H41N2O9PRS	-1	
3hcinnm	3-hydroxycinnamic acid	C9H7O3	-1	
3hcmrs7eACP	(R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]	C25H45N2O9PRS	-1	
3hcpalm9eACP	(R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]	C27H49N2O9PRS	-1	
3hcvac11eACP	(R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]	C29H53N2O9PRS	-1	
3hdcoa	(S)-3-Hydroxydecanoyl-CoA	C31H50N7O18P3S	-4	
3hddcoa	(S)-3-Hydroxydodecanoyl-CoA	C33H54N7O18P3S	-4	
3hddecACP	(R)-3-Hydroxydodecanoyl-[acyl-carrier protein]	C23H43N2O9PRS	-1	8/6/83
3hdecACP	(R)-3-Hydroxydecanoyl-[acyl-carrier protein]	C21H39N2O9PRS	-1	320-77-4
3hhcoa	(S)-3-Hydroxyhexanoyl-CoA	C27H42N7O18P3S	-4	
3hhdcoa	(S)-3-Hydroxyhexadecanoyl-CoA	C37H62N7O18P3S	-4	
3hhexACP	(R)-3-Hydroxyhexanoyl-[acyl-carrier protein]	C17H31N2O9PRS	-1	8/6/83
3hmrsACP	(R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]	C25H47N2O9PRS	-1	
3hocoa	(S)-3-Hydroxyoctanoyl-CoA	C29H46N7O18P3S	-4	
3hoctACP	(R)-3-Hydroxyoctanoyl-[acyl-carrier protein]	C19H35N2O9PRS	-1	
3hoctaACP	(R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]	C29H55N2O9PRS	-1	
3hodcoa	(S)-3-Hydroxyoctadecanoyl-CoA	C39H66N7O18P3S	-4	
3hpalmACP	R-3-hydroxypalmitoyl-[acyl-carrier protein]	C27H51N2O9PRS	-1	
3hpppn	3-(3-hydroxy-phenyl)propionate	C9H9O3	-1	
3htdcoa	(S)-3-Hydroxytetradecanoyl-CoA	C35H58N7O18P3S	-4	
3ig3p	C'-(3-Indolyl)-glycerol 3-phosphate	C11H12NO6P	-2	
3mob	3-Methyl-2-oxobutanoate	C5H7O3	-1	
3mop	(S)-3-Methyl-2-oxopentanoate	C6H9O3	-1	
3ocddec5eACP	3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]	C23H39N2O9PRS	-1	
3ocmrs7eACP	3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]	C25H43N2O9PRS	-1	
3ocpalm9eACP	3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]	C27H47N2O9PRS	-1	
3ocvac11eACP	3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]	C29H51N2O9PRS	-1	
3odcoa	3-Oxodecanoyl-CoA	C31H48N7O18P3S	-4	
3oddcoa	3-Oxododecanoyl-CoA	C33H52N7O18P3S	-4	
3oddecACP	3-Oxododecanoyl-[acyl-carrier protein]	C23H41N2O9PRS	-1	8/6/83
3odecACP	3-Oxodecanoyl-[acyl-carrier protein]	C21H37N2O9PRS	-1	8/6/83
3ohcoa	3-Oxohexanoyl-CoA	C27H40N7O18P3S	-4	5096-70-8
3ohdcoa	3-Oxohexadecanoyl-CoA	C37H60N7O18P3S	-4	
3ohexACP	3-Oxohexanoyl-[acyl-carrier protein]	C17H29N2O9PRS	-1	8/6/83
3omrsACP	3-Oxotetradecanoyl-[acyl-carrier protein]	C25H45N2O9PRS	-1	8/6/83
3oocoa	3-Oxooctanoyl-CoA	C29H44N7O18P3S	-4	
3ooctACP	3-Oxooctanoyl-[acyl-carrier protein]	C19H33N2O9PRS	-1	8/6/83
3ooctdACP	3-Oxooctadecanoyl-[acyl-carrier protein]	C29H53N2O9PRS	-1	
3oodcoa	3-Oxooctadecanoyl-CoA	C39H64N7O18P3S	-4	
3opalmACP	3-Oxohexadecanoyl-[acyl-carrier protein]	C27H49N2O9PRS	-1	8/6/83
3ophb	3-Octaprenyl-4-hydroxybenzoate	C47H69O3	-1	
3otdcoa	3-Oxotetradecanoyl-CoA	C35H56N7O18P3S	-4	
3pg	3-Phospho-D-glycerate	C3H4O7P	-3	
3php	3-Phosphohydroxypyruvate	C3H2O7P	-3	
3psme	5-O-(1-Carboxyvinyl)-3-phosphoshikimate	C10H9O10P	-4	
3sala	3-Sulfino-L-alanine	C3H5NO4S	-2	1115-65-7
3ump	3'-UMP	C9H11N2O9P	-2	35170-03-7
4abut	4-Aminobutanoate	C4H9NO2	0	56-12-2
4abutn	4-Aminobutanal	C4H10NO	1	
4abz	4-Aminobenzoate	C7H6NO2	-1	150-13-0
4adcho	4-amino-4-deoxychorismate	C10H10NO5	-1	
4ahmmp	4-Amino-5-hydroxymethyl-2-methylpyrimidine	C6H9N3O	0	73-67-6
4ampm	4-Amino-2-methyl-5-phosphomethylpyrimidine	C6H8N3O4P	-2	
4c2me	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol	C14H23N3O14P2	-2	
4h2opntn	4-Hydroxy-2-oxopentanoate	C5H7O4	-1	111844-33-8
4hba	4-Hydroxy-benzyl alcohol	C7H8O2	0	
4hbz	4-Hydroxybenzoate	C7H5O3	-1	99-96-7
4hoxpacd	4-Hydroxyphenylacetaldehyde	C8H8O2	0	60-11-7
4hthr	4-Hydroxy-L-threonine	C4H9NO4	0	
4mhetz	4-Methyl-5-(2-hydroxyethyl)-thiazole	C6H9NOS	0	137-00-8
4mop	4-Methyl-2-oxopentanoate	C6H9O3	-1	
4mpetz	4-Methyl-5-(2-phosphoethyl)-thiazole	C6H8NO4PS	-2	
4pasp	4-Phospho-L-aspartate	C4H6NO7P	-2	
4per	4-Phospho-D-erythronate	C4H6O8P	-3	
4ppan	D-4'-Phosphopantothenate	C9H15NO8P	-3	
4ppcys	N-((R)-4-Phosphopantothenoyl)-L-cysteine	C12H20N2O9PS	-3	
4r5au	4-(1-D-Ribitylamino)-5-aminouracil	C9H16N4O6	0	
5aizc	5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate	C9H11N3O9P	-3	
5aop	5-Amino-4-oxopentanoate	C5H9NO3	0	106-60-5
5aprbu	5-Amino-6-(5'-phosphoribitylamino)uracil	C9H15N4O9P	-2	
5apru	5-Amino-6-(5'-phosphoribosylamino)uracil	C9H13N4O9P	-2	
5caiz	5-phosphoribosyl-5-carboxyaminoimidazole	C9H11N3O9P	-3	
5dglcn	5-Dehydro-D-gluconate	C6H9O7	-1	
5dh4dglc	5-Dehydro-4-deoxy-D-glucarate	C6H6O7	-2	
5drib	5'-deoxyribose	C5H10O4	0	
5mdr1p	5-Methylthio-5-deoxy-D-ribose 1-phosphate	C6H11O7PS	-2	
5mdru1p	5-Methylthio-5-deoxy-D-ribulose 1-phosphate	C6H11O7PS	-2	
5mta	5-Methylthioadenosine	C11H15N5O3S	0	2457-80-9
5mthf	5-Methyltetrahydrofolate	C20H24N7O6	-1	
5mtr	5-Methylthio-D-ribose	C6H12O4S	0	
5prdmbz	"N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole"	C14H17N2O7P	-2	
6hmhpt	6-hydroxymethyl dihydropterin	C7H9N5O2	0	
6hmhptpp	6-hydroxymethyl-dihydropterin pyrophosphate	C7H8N5O8P2	-3	
6pgc	6-Phospho-D-gluconate	C6H10O10P	-3	
6pgl	"6-phospho-D-glucono-1,5-lactone"	C6H9O9P	-2	None
8aonn	8-Amino-7-oxononanoate	C9H17NO3	0	
ACP	acyl carrier protein	C11H21N2O7PRS	-1	
LalaDglu	L-alanine-D-glutamate	C8H13N2O5	-1	
LalaDgluMdap	"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate"	C15H25N4O8	-1	
LalaDgluMdapDala	"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine"	C18H30N5O9	-1	
LalaLglu	L-alanine-L-glutamate	C8H13N2O5	-1	
N1aspmd	N1-Acetylspermidine	C9H23N3O	2	34450-16-3
Nmtrp	N-Methyltryptophan	C12H14N2O2	0	526-31-8
Sfglutth	S-Formylglutathione	C11H16N3O7S	-1	
aacald	Aminoacetaldehyde	C2H6NO	1	452-86-8
aacoa	Acetoacetyl-CoA	C25H36N7O18P3S	-4	1420-36-6
aact	Aminoacetone	C3H8NO	1	298-08-8
ac	Acetate	C2H3O2	-1	71-50-1
acACP	Acetyl-ACP	C13H23N2O8PRS	-1	
acac	Acetoacetate	C4H5O3	-1	541-50-4
acald	Acetaldehyde	C2H4O	0	75-07-0
acanth	N-Acetylanthranilate	C9H8NO3	-1	89-52-1
accoa	Acetyl-CoA	C23H34N7O17P3S	-4	72-89-9
acetol	Acetol	C3H6O2	0	116-09-6
acg5p	N-Acetyl-L-glutamyl 5-phosphate	C7H9NO8P	-3	
acg5sa	N-Acetyl-L-glutamate 5-semialdehyde	C7H10NO4	-1	None
acgal	N-Acetyl-D-galactosamine	C8H15NO6	0	14215-68-0
acgal1p	N-Acetyl-D-galactosamine 1-phosphate	C8H14NO9P	-2	
acgam	N-Acetyl-D-glucosamine	C8H15NO6	0	7512-17-6
acgam1p	N-Acetyl-D-glucosamine 1-phosphate	C8H14NO9P	-2	None
acgam6p	N-Acetyl-D-glucosamine 6-phosphate	C8H14NO9P	-2	102029-88-9
acglc-D	6-Acetyl-D-glucose	C8H14O7	0	107-85-7
acglu	N-Acetyl-L-glutamate	C7H9NO5	-2	1188-37-0
acmalt	Acetyl-maltose	C14H24O12	0	
acmana	N-Acetyl-D-mannosamine	C8H15NO6	0	3615-17-6
acmanap	N-Acetyl-D-mannosamine 6-phosphate	C8H14NO9P	-2	157296-99-6
acmum	N-Acetylmuramate	C11H18NO8	-1	61633-75-8
acmum6p	N-acetylmuramate 6-phosphate	C11H17NO11P	-3	
acnam	N-Acetylneuraminate	C11H18NO9	-1	131-48-6
acolipa	4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A	C181H314N3O103P4	-9	
acon-C	cis-Aconitate	C6H3O6	-3	585-84-2
acon-T	trans-Aconitate	C6H3O6	-3	4023-65-8
aconm	E-3-carboxy-2-pentenedioate 6-methyl ester	C7H6O6	-2	
acorn	N2-Acetyl-L-ornithine	C7H14N2O3	0	None
acser	O-Acetyl-L-serine	C5H9NO4	0	66638-22-0
actACP	Acetoacetyl-ACP	C15H25N2O9PRS	-1	
actp	Acetyl phosphate	C2H3O5P	-2	19926-71-7
ade	Adenine	C5H5N5	0	73-24-5
adn	Adenosine	C10H13N5O4	0	58-61-7
adocbi	Adenosyl cobinamide	C58H84CoN16O11	1	
adocbip	Adenosyl cobinamide phosphate	C58H83CoN16O14P	-1	
adocbl	Adenosylcobalamin	C72H100CoN18O17P	0	13870-90-1
adp	ADP	C10H12N5O10P2	-3	58-64-0
adpglc	ADPglucose	C16H23N5O15P2	-2	
adphep-DD	ADP-D-glycero-D-manno-heptose	C17H25N5O16P2	-2	119-61-9
adphep-LD	ADP-L-glycero-D-manno-heptose	C17H25N5O16P2	-2	
adprib	ADPribose	C15H21N5O14P2	-2	
ag	silver	Ag	1	7440-22-4
agdpcbi	Adenosine-GDP-cobinamide	C68H95CoN21O21P2	-1	
agm	Agmatine	C5H16N4	2	306-60-5
ahcys	S-Adenosyl-L-homocysteine	C14H20N6O5S	0	979-92-0
ahdt	"2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate"	C9H12N5O13P3	-4	
aicar	5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide	C9H13N4O8P	-2	3031-94-5
air	5-amino-1-(5-phospho-D-ribosyl)imidazole	C8H12N3O7P	-2	25635-88-5
akg	2-Oxoglutarate	C5H4O5	-2	328-50-7
ala-B	beta-Alanine	C3H7NO2	0	107-95-9
ala-D	D-Alanine	C3H7NO2	0	338-69-2
ala-L	L-Alanine	C3H7NO2	0	56-41-7
alaala	D-Alanyl-D-alanine	C6H12N2O3	0	923-16-0
alac-S	(S)-2-Acetolactate	C5H7O4	-1	
alatrna	L-Alanyl-tRNA(Ala)	C3H6NOR	1	
all-D	D-Allose	C6H12O6	0	2595-97-3
all6p	D-Allose 6-phosphate	C6H11O9P	-2	147-94-4
alltn	Allantoin	C4H6N4O3	0	97-59-6
alltt	Allantoate	C4H7N4O4	-1	99-16-1
allul6p	Allulose 6-phosphate	C6H11O9P	-2	
alpp	applipoprotein	X	0	
altrn	D-Altronate	C6H11O7	-1	
amet	S-Adenosyl-L-methionine	C15H23N6O5S	1	29908-03-0
ametam	S-Adenosylmethioninamine	C14H24N6O3S	2	
amob	S-Adenosyl-4-methylthio-2-oxobutanoate	C15H19N5O6S	0	
amp	AMP	C10H12N5O7P	-2	61-19-8
anhgm	N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid	C19H29N2O12	-1	
anhgm3p	N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide	C34H52N6O19	-2	
anhgm4p	N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide	C37H57N7O20	-2	
anhm	"1,6-anhydrous-N-Acetylmuramate"	C11H16NO7	-1	
anhm3p	"1,6-anhydrous-N-Acetylmuramyl-tripeptide"	C26H39N5O14	-2	
anhm4p	"1,6-anhydrous-N-Acetylmuramyl-tetrapeptide"	C29H44N6O15	-2	
anth	Anthranilate	C7H6NO2	-1	118-92-3
ap4a	"P1,P4-Bis(5'-adenosyl) tetraphosphate"	C20H24N10O19P4	-4	
ap5a	"P1,P5-Bis(5'-adenosyl) pentaphosphate"	C20H24N10O22P5	-5	4637-56-3
apg120	acyl phosphatidylglycerol (n-C12:0)	C42H80O11P	-1	
apg140	acyl phosphatidylglycerol (n-C14:0)	C48H92O11P	-1	
apg141	acyl phosphatidylglycerol (n-C14:1)	C48H86O11P	-1	
apg160	acyl phosphatidylglycerol (n-C16:0)	C54H104O11P	-1	
apg161	acyl phosphatidylglycerol (n-C16:1)	C54H98O11P	-1	
apg180	acyl phosphatidylglycerol (n-C18:0)	C60H116O11P	-1	
apg181	acyl phosphatidylglycerol (n-C18:1)	C60H110O11P	-1	
apoACP	apoprotein [acyl carrier protein]	RHO	0	
aps	Adenosine 5'-phosphosulfate	C10H12N5O10PS	-2	
ara5p	D-Arabinose 5-phosphate	C5H9O8P	-2	
arab-L	L-Arabinose	C5H10O5	0	147-81-9
aragund	O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate	C71H115N1O17P2	-2	
arbt6p	Arbutin 6-phosphate	C12H15O10P	-2	
arbtn	aerobactin minus Fe3	C22H33N4O13	-3	
arbtn-fe3	Aerobactin	C22H33FeN4O13	0	61-33-6
arg-L	L-Arginine	C6H15N4O2	1	74-79-3
argsuc	N(omega)-(L-Arginino)succinate	C10H17N4O6	-1	None
argtrna	L-Arginyl-tRNA(Arg)	C6H14N4OR	2	
ascb-L	L-Ascorbate	C6H8O6	0	50-81-7
ascb6p	L-ascorbate-6-phosphate	C6H7O9P	-2	
asn-L	L-Asparagine	C4H8N2O3	0	70-47-3
asntrna	L-Asparaginyl-tRNA(Asn)	C4H7N2O2R	1	
aso3	arsenite	AsO3	-3	
aso4	arsenate	AsO4	-3	7778-39-4
asp-L	L-Aspartate	C4H6NO4	-1	56-84-8
aspsa	L-Aspartate 4-semialdehyde	C4H7NO3	0	None
asptrna	L-Aspartyl-tRNA(Asp)	C4H5NO3R	0	
athr-L	L-Allo-threonine	C4H9NO3	0	28954-12-3
atp	ATP	C10H12N5O13P3	-4	56-65-5
b2coa	Crotonoyl-CoA	C25H36N7O17P3S	-4	102680-35-3
bbtcoa	gamma-butyrobetainyl-CoA	C28H46N8O17P3S	-3	
betald	Betaine aldehyde	C5H12NO	1	
bglycogen	branching glycogen	C6H10O5	0	
btal	Butanal	C4H8O	0	123-72-8
btcoa	Butanoyl-CoA	C25H38N7O17P3S	-4	
btn	Biotin	C10H15N2O3S	-1	58-85-5
btnso	d-biotin d-sulfoxide	C10H15N2O4S	-1	
but	Butyrate (n-C4:0)	C4H7O2	-1	107-92-6
but2eACP	But-2-enoyl-[acyl-carrier protein]	C15H25N2O8PRS	-1	128-33-6
butACP	Butyryl-ACP (n-C4:0ACP)	C15H27N2O8PRS	-1	8/6/83
butso3	butanesulfonate	C4H9O3S	-1	
ca2	Calcium	Ca	2	7440-70-2
camp	cAMP	C10H11N5O6P	-1	
cbasp	N-Carbamoyl-L-aspartate	C5H6N2O5	-2	
cbi	Cobinamide	C48H72CoN11O8	0	1867-62-5
cbl1	Cob(I)alamin	C62H88CoN13O14P	-1	18534-66-2
cbp	Carbamoyl phosphate	CH2NO5P	-2	
cd2	Cadmium	Cd	2	
cddec5eACP	cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)	C23H41N2O8PRS	-1	
cdec3eACP	cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1)	C21H37N2O8PRS	-1	
cdp	CDP	C9H12N3O11P2	-3	63-38-7
cdpdddecg	"CDP-1,2-didodecanoylglycerol"	C36H63N3O15P2	-2	
cdpdhdec9eg	"CDP-1,2-dihexadec-9-enoylglycerol"	C44H75N3O15P2	-2	
cdpdhdecg	"CDP-1,2-dihexadecanoylglycerol"	C44H79N3O15P2	-2	
cdpdodec11eg	"CDP-1,2-dioctadec-11-enoylglycerol"	C48H83N3O15P2	-2	
cdpdodecg	"CDP-1,2-dioctadecanoylglycerol"	C48H87N3O15P2	-2	
cdpdtdec7eg	"CDP-1,2-ditetradec-7-enoylglycerol"	C40H67N3O15P2	-2	
cdpdtdecg	"CDP-1,2-ditetradecanoylglycerol"	C40H71N3O15P2	-2	
cechddd	"cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol"	C9H11O4	-1	
cenchddd	"cis-3-(3-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol"	C9H9O4	-1	
cgly	Cys-Gly	C5H10N2O3S	0	19246-18-5
chol	Choline	C5H14NO	1	123-41-1
chor	chorismate	C10H8O6	-2	55508-12-8
cinnm	trans-Cinnamate	C9H7O2	-1	140-10-3
cit	Citrate	C6H5O7	-3	77-92-9
citr-L	L-Citrulline	C6H13N3O3	0	372-75-8
ckdo	CMP-3-deoxy-D-manno-octulosonate	C17H24N3O15P	-2	
cl	Chloride	Cl	-1	
clpn120	"cardiolipin (tetradodecanoyl, n-C12:0)"	C57H108O17P2	-2	
clpn140	"cardiolipin (tetratetradecanoyl, n-C14:0)"	C65H124O17P2	-2	
clpn141	"cardiolipin (tetratetradec-7-enoyl, n-C14:1)"	C65H116O17P2	-2	
clpn160	"cardiolipin (tetrahexadecanoyl, n-C16:0)"	C73H140O17P2	-2	
clpn161	"cardiolipin (tetrahexadec-9-enoyl, n-C16:1)"	C73H132O17P2	-2	
clpn180	"cardiolipin (tetraoctadecanoyl, n-C18:0)"	C81H156O17P2	-2	
clpn181	"cardiolipin (tetraoctadec-11-enoyl, n-C18:1)"	C81H148O17P2	-2	
cmp	CMP	C9H12N3O8P	-2	
co2	CO2	CO2	0	124-38-9
coa	Coenzyme A	C21H32N7O16P3S	-4	85-61-0
cobalt2	Co2+	Co	2	7440-48-4
colipa	core oligosaccharide lipid A	C176H303N2O100P4	-11	
cpe160	"cyclopropane phosphatidylethanolamine (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)"	C39H74N1O8P1	0	
cpe180	"cyclopropane phosphatidylethanolamine (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)"	C43H82N1O8P1	0	
cpg160	"cyclopropane phosphatidylglycerol (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)"	C40H74O10P1	-1	
cpg180	"cyclopropane phosphatidylglycerol (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)"	C44H82O10P1	-1	
cpgn	coprogen	C35H52N6O13Fe	-1	
cpgn-un	coprogen unloaded (no Fe(III))	C35H52N6O13	-4	
cpppg3	Coproporphyrinogen III	C36H40N4O8	-4	2624-63-7
crn	L-Carnitine	C7H15NO3	0	541-15-1
crn-D	D-Carnitine	C7H15NO3	0	
crnDcoa	D-carnitinyl-CoA	C28H46N8O18P3S	-3	
crncoa	L-Carnitinyl-CoA	C28H46N8O18P3S	-3	
csn	Cytosine	C4H5N3O	0	71-30-7
ctbt	crotonobetaine	C7H13NO2	0	6666-46-2
ctbtcoa	crotonobetainyl-CoA	C28H44N8O17P3S	-3	
ctp	CTP	C9H12N3O14P3	-4	65-47-4
cu	Cu+	Cu	1	
cu2	Cu2+	Cu	2	
cyan	Hydrogen cyanide	CHN	0	57-12-5
cynt	Cyanate	CNO	-1	420-05-3
cys-D	D-Cysteine	C3H7NO2S	0	921-01-7
cys-L	L-Cysteine	C3H7NO2S	0	52-90-4
cyst-L	L-Cystathionine	C7H14N2O4S	0	56-88-2
cystrna	L-Cysteinyl-tRNA(Cys)	C3H6NOSR	1	
cytd	Cytidine	C9H13N3O5	0	65-46-3
dad-2	Deoxyadenosine	C10H13N5O3	0	958-09-8
dad-5	5'-Deoxyadenosine	C10H13N5O3	0	
dadp	dADP	C10H12N5O9P2	-3	None
damp	dAMP	C10H12N5O6P	-2	653-63-4
dann	"7,8-Diaminononanoate"	C9H21N2O2	1	
datp	dATP	C10H12N5O12P3	-4	1927-31-7
db4p	"3,4-dihydroxy-2-butanone 4-phosphate"	C4H7O6P	-2	
dc2coa	trans-Dec-2-enoyl-CoA	C31H48N7O17P3S	-4	
dca	Decanoate (n-C10:0)	C10H19O2	-1	334-48-5
dcaACP	Decanoyl-ACP (n-C10:0ACP)	C21H39N2O8PRS	-1	
dcacoa	Decanoyl-CoA (n-C10:0CoA)	C31H50N7O17P3S	-4	
dcamp	"N6-(1,2-Dicarboxyethyl)-AMP"	C14H14N5O11P	-4	
dcdp	dCDP	C9H12N3O10P2	-3	None
dcmp	dCMP	C9H12N3O7P	-2	1032-65-1
dctp	dCTP	C9H12N3O13P3	-4	2056-98-6
dcyt	Deoxycytidine	C9H13N3O4	0	951-77-9
dd2coa	trans-Dodec-2-enoyl-CoA	C33H52N7O17P3S	-4	
ddca	Dodecanoate (n-C12:0)	C12H23O2	-1	143-07-7
ddcaACP	Dodecanoyl-ACP (n-C12:0ACP)	C23H43N2O8PRS	-1	
ddcacoa	Dodecanoyl-CoA (n-C12:0CoA)	C33H54N7O17P3S	-4	6244-92-4
dgdp	dGDP	C10H12N5O10P2	-3	
dgmp	dGMP	C10H12N5O7P	-2	902-04-5
dgsn	Deoxyguanosine	C10H13N5O4	0	961-07-9
dgtp	dGTP	C10H12N5O13P3	-4	2564-35-4
dha	Dihydroxyacetone	C3H6O3	0	96-26-4
dhap	Dihydroxyacetone phosphate	C3H5O6P	-2	57-04-5
dhcinnm	"2,3-dihydroxicinnamic acid"	C9H7O4	-1	
dhf	"7,8-Dihydrofolate"	C19H19N7O6	-2	4033-27-6
dhmptp	dihydromonapterin-triphosphate	C9H12N5O13P3	-4	
dhna	"1,4-Dihydroxy-2-naphthoate"	C11H7O4	-1	
dhnpt	Dihydroneopterin	C9H13N5O4	0	
dhor-S	(S)-Dihydroorotate	C5H5N2O4	-1	5988-19-2
dhpmp	Dihydroneopterin monophosphate	C9H12N5O7P	-2	
dhpppn	"3-(2,3-Dihydroxyphenyl)propanoate"	C9H9O4	-1	
dhpt	Dihydropteroate	C14H13N6O3	-1	
dhptd	"4,5-dihydroxy-2,3-pentanedione"	C5H8O4	0	
didp	dIDP	C10H11N4O10P2	-3	
dimp	dIMP	C10H11N4O7P	-2	
din	Deoxyinosine	C10H12N4O4	0	890-38-0
ditp	dITP	C10H11N4O13P3	-4	
dkmpp	"2,3-diketo-5-methylthio-1-phosphopentane"	C6H9O6PS	-2	
dmbzid	"5,6-Dimethylbenzimidazole"	C9H10N2	0	582-60-5
dmlz	"6,7-Dimethyl-8-(1-D-ribityl)lumazine"	C13H18N4O6	0	
dmpp	Dimethylallyl diphosphate	C5H9O7P2	-3	358-71-4
dms	Dimethyl sulfide	C2H6S	0	75-18-3
dmso	Dimethyl sulfoxide	C2H6OS	0	
dnad	Deamino-NAD+	C21H24N6O15P2	-2	
dopa	Dopamine	C8H12NO2	1	51-61-6
dpcoa	Dephospho-CoA	C21H33N7O13P2S	-2	
dsbaox	periplasmic protein disulfide isomerase I (oxidized)	X	0	
dsbard	periplasmic protein disulfide isomerase I (reduced)	XH2	0	
dsbcox	protein disulfide isomerase II (oxidized)	X	0	
dsbcrd	protein disulfide isomerase II (reduced)	XH2	0	
dsbdox	fused thiol:disulfide interchange protein (oxidized)	X	0	
dsbdrd	fused thiol:disulfide interchange protein (reduced)	XH2	0	
dsbgox	periplasmic disulfide isomerase/thiol-disulphide oxidase (oxidized)	X	0	
dsbgrd	periplasmic disulfide isomerase/thiol-disulphide oxidase (reduced)	XH2	0	
dscl	dihydrosirohydrochlorin	C42H41N4O16	-7	65207-12-7
dtbt	Dethiobiotin	C10H17N2O3	-1	
dtdp	dTDP	C10H13N2O11P2	-3	
dtdp4aaddg	"dTDP-4-acetamido-4,6-dideoxy-D-galactose"	C18H27N3O15P2	-2	
dtdp4addg	"dTDP-4-amino-4,6-dideoxy-D-glucose"	C16H26N3O14P2	-1	
dtdp4d6dg	dTDP-4-dehydro-6-deoxy-D-glucose	C16H22N2O15P2	-2	
dtdp4d6dm	dTDP-4-dehydro-6-deoxy-L-mannose	C16H22N2O15P2	-2	
dtdpglu	dTDPglucose	C16H24N2O16P2	-2	2009-24-7
dtdprmn	dTDP-L-rhamnose	C16H24N2O15P2	-2	572-96-3
dtmp	dTMP	C10H13N2O8P	-2	365-07-1
dttp	dTTP	C10H13N2O14P3	-4	
dudp	dUDP	C9H11N2O11P2	-3	
dump	dUMP	C9H11N2O8P	-2	964-26-1
duri	Deoxyuridine	C9H12N2O5	0	951-78-0
dutp	dUTP	C9H11N2O14P3	-4	
dxyl	1-deoxy-D-xylulose	C5H10O4	0	
dxyl5p	1-deoxy-D-xylulose 5-phosphate	C5H9O7P	-2	
e4p	D-Erythrose 4-phosphate	C4H7O7P	-2	585-18-2
eca2und	(enterobacterial common antigen)x2 undecaprenyl-diphosphate	C103H162N6O37P2	-4	
eca3und	(enterobacterial common antigen)x3 undecaprenyl-diphosphate	C127H198N9O52P2	-5	
eca4colipa	(enterobacterial common antigen)x4 core oligosaccharide lipid A	C272H447N14O160P4	-15	
eca4und	(enterobacterial common antigen)x4 undecaprenyl-diphosphate	C151H234N12O67P2	-6	
eig3p	D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate	C6H9N2O6P	-2	
enlipa	phosphoethanolamine KDO(2)-lipid (A)	C112H202N3O42P3	-6	
enter	Enterochelin	C30H27N3O15	0	
etha	Ethanolamine	C2H8NO	1	141-43-5
ethso3	ethanesulfonate	C2H5O3S	-1	
etoh	Ethanol	C2H6O	0	64-17-5
f1p	D-Fructose 1-phosphate	C6H11O9P	-2	15978-08-2
f6p	D-Fructose 6-phosphate	C6H11O9P	-2	643-13-0
fad	Flavin adenine dinucleotide oxidized	C27H31N9O15P2	-2	146-14-5
fadh2	Flavin adenine dinucleotide reduced	C27H33N9O15P2	-2	
fald	Formaldehyde	CH2O	0	50-00-0
fc1p	L-Fuculose 1-phosphate	C6H11O8P	-2	None
fcl-L	L-fuculose	C6H12O5	0	
fdp	"D-Fructose 1,6-bisphosphate"	C6H10O12P2	-4	488-69-7
fe2	Fe2+	Fe	2	None
fe3	Fe3+	Fe	3	None
fe3dcit	Fe(III)dicitrate	C12H10FeO14	-3	
fe3dhbzs	"ferric 2,3-dihydroxybenzoylserine"	C10H10NO6Fe	2	
fe3hox	Fe(III)hydroxamate	C9H18O6N3Fe	0	
fe3hox-un	"Fe(III)hydoxamate, unloaded"	C9H18O6N3	-3	
fecrm	Ferrichrome	C27H42FeN9O12	0	
fecrm-un	Ferrichrome minus Fe(III)	C27H42N9O12	-3	
feenter	Fe-enterobactin	C30H27FeN3O15	3	
feoxam	ferroxamine	C25H46FeN6O8	1	
feoxam-un	ferroxamine minus Fe(3)	C25H46N6O8	-2	
fgam	N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide	C8H13N2O9P	-2	
fldox	flavodoxin (oxidized)	X	0	
fldrd	flavodoxin (reduced)	XH2	0	
fmettrna	N-Formylmethionyl-tRNA	C6H9NO2SR	0	
fmn	FMN	C17H19N4O9P	-2	146-17-8
fmnh2	Reduced FMN	C17H21N4O9P	-2	67-63-0
for	Formate	CH1O2	-1	64-18-6
fpram	2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine	C8H15N3O8P	-1	
fprica	5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide	C10H13N4O9P	-2	
frdp	Farnesyl diphosphate	C15H25O7P2	-3	13058-04-3
fru	D-Fructose	C6H12O6	0	57-48-7
frulys	fructoselysine	C12H25N2O7	1	
frulysp	fructoselysine Phosphate	C12H24N2O10P	-1	
fruur	D-Fructuronate	C6H9O7	-1	669-90-9
fuc-L	L-Fucose	C6H12O5	0	2438-80-4
fum	Fumarate	C4H2O4	-2	110-17-8
g1p	D-Glucose 1-phosphate	C6H11O9P	-2	59-56-3
g3p	Glyceraldehyde 3-phosphate	C3H5O6P	-2	142-10-9
g3pc	sn-Glycero-3-phosphocholine	C8H20NO6P	0	
g3pe	sn-Glycero-3-phosphoethanolamine	C5H14NO6P	0	
g3pg	Glycerophosphoglycerol	C6H14O8P	-1	11034-93-8
g3pi	sn-Glycero-3-phospho-1-inositol	C9H18O11P	-1	
g3ps	Glycerophosphoserine	C6H13NO8P	-1	
g6p	D-Glucose 6-phosphate	C6H11O9P	-2	56-73-5
gagicolipa	galactosyl-glucosyl-inner core oligosaccharide lipid A	C157H271N2O84P4	-11	
gal	D-Galactose	C6H12O6	0	59-23-4
gal-bD	beta D-Galactose	C6H12O6	0	33419-42-0
gal1p	alpha-D-Galactose 1-phosphate	C6H11O9P	-2	2255-14-3
galct-D	D-Galactarate	C6H8O8	-2	526-99-8
galctn-D	D-Galactonate	C6H11O7	-1	
galctn-L	L-Galactonate	C6H11O7	-1	
galt	Galactitol	C6H14O6	0	608-66-2
galt1p	Galactitol 1-phosphate	C6H13O9P	-2	
galur	D-Galacturonate	C6H9O7	-1	685-73-4
gam	D-Glucosamine	C6H14NO5	1	3416-24-8
gam1p	D-Glucosamine 1-phosphate	C6H13NO8P	-1	
gam6p	D-Glucosamine 6-phosphate	C6H13NO8P	-1	3616-42-0
gar	N1-(5-Phospho-D-ribosyl)glycinamide	C7H14N2O8P	-1	
garagund	glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate	C77H125N1O22P2	-2	
gbbtn	gamma-butyrobetaine	C7H15NO2	0	
gcald	Glycolaldehyde	C2H4O2	0	
gdp	GDP	C10H12N5O11P2	-3	146-91-8
gdpddman	GDP-4-dehydro-6-deoxy-D-mannose	C16H21N5O15P2	-2	
gdpfuc	GDP-L-fucose	C16H23N5O15P2	-2	
gdpmann	GDP-D-mannose	C16H23N5O16P2	-2	
gdpofuc	GDP-4-oxo-L-fucose	C16H21N5O15P2	-2	
gdptp	Guanosine 3'-diphosphate 5'-triphosphate	C10H11N5O20P5	-7	
gfgaragund	galactofuranosyl-glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate	C83H135N1O27P2	-2	
gg4abut	gamma-glutamyl-gamma aminobutyric acid	C9H15O5N2	-1	
ggagicolipa	glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A	C163H281N2O89P4	-11	
ggbutal	gamma-glutamyl-gamma-butyraldehyde	C9H16O4N2	0	
gggagicolipa	glucosyl-glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A	C169H291N2O94P4	-11	
ggptrc	gamma-glutamyl-putrescine	C9H20O3N3	1	
gicolipa	glucosyl-inner core oligosaccharide lipid A	C151H261N2O79P4	-11	
glc-D	D-Glucose	C6H12O6	0	50-99-7
glcn	D-Gluconate	C6H11O7	-1	526-95-4
glcr	D-Glucarate	C6H8O8	-2	87-73-0
glcur	D-Glucuronate	C6H9O7	-1	12/3/56
glcur1p	D-Glucuronate 1-phosphate	C6H8O10P	-3	
gln-L	L-Glutamine	C5H10N2O3	0	56-85-9
glntrna	L-Glutaminyl-tRNA(Gln)	C5H9N2O2R	1	
glu-D	D-Glutamate	C5H8NO4	-1	6893-26-1
glu-L	L-Glutamate	C5H8NO4	-1	56-86-0
glu1sa	L-Glutamate 1-semialdehyde	C5H9NO3	0	None
glu5p	L-Glutamate 5-phosphate	C5H8NO7P	-2	
glu5sa	L-Glutamate 5-semialdehyde	C5H9NO3	0	None
glucys	gamma-L-Glutamyl-L-cysteine	C8H13N2O5S	-1	686-58-8
glutrna	L-Glutamyl-tRNA(Glu)	C5H7NO3R	0	None
glx	Glyoxylate	C2H1O3	-1	298-12-4
gly	Glycine	C2H5NO2	0	56-40-6
glyald	D-Glyceraldehyde	C3H6O3	0	453-17-8
glyb	Glycine betaine	C5H11NO2	0	107-43-7
glyc	Glycerol	C3H8O3	0	56-81-5
glyc-R	(R)-Glycerate	C3H5O4	-1	473-81-4
glyc2p	Glycerol 2-phosphate	C3H7O6P	-2	3249-68-1
glyc3p	Glycerol 3-phosphate	C3H7O6P	-2	
glyclt	Glycolate	C2H3O3	-1	79-14-1
glycogen	glycogen	C6H10O5	0	
glytrna	Glycyl-tRNA(Gly)	C2H4NOR	1	
gmhep17bp	"D-Glycero-D-manno-heptose 1,7-bisphosphate"	C7H12O13P2	-4	
gmhep1p	D-Glycero-D-manno-heptose 1-phosphate	C7H13O10P	-2	
gmhep7p	D-Glycero-D-manno-heptose 7-phosphate	C7H13O10P	-2	
gmp	GMP	C10H12N5O8P	-2	85-32-5
gp4g	"P1,P4-Bis(5'-guanosyl) tetraphosphate"	C20H24N10O21P4	-4	
grdp	Geranyl diphosphate	C10H17O7P2	-3	
grxox	glutaredoxin (oxidized)	X	0	
grxrd	glutaredoxin (reduced)	XH2	0	
gsn	Guanosine	C10H13N5O5	0	118-00-3
gthox	Oxidized glutathione	C20H30N6O12S2	-2	
gthrd	Reduced glutathione	C10H16N3O6S	-1	70-18-8
gtp	GTP	C10H12N5O14P3	-4	86-01-1
gtspmd	Glutathionylspermidine	C17H36N6O5S	2	8/6/83
gua	Guanine	C5H5N5O	0	73-40-5
h	H+	H	1	12408-02-5
h2	H2	H2	0	1333-74-0
h2mb4p	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate	C5H9O8P2	-3	
h2o	H2O	H2O	0	7732-18-5
h2o2	Hydrogen peroxide	H2O2	0	7722-84-1
h2s	Hydrogen sulfide	H2S	0	6/4/83
hacolipa	hepta-acylated core oligosaccharide lipid A (E. coli)	C192H333N2O101P4	-11	
halipa	hepta-acylated KDO(2)-lipid (A)	C126H226N2O40P2	-6	
hco3	Bicarbonate	CHO3	-1	71-52-3
hcys-L	L-Homocysteine	C4H9NO2S	0	6027-13-0
hdca	Hexadecanoate (n-C16:0)	C16H31O2	-1	57-10-3
hdcea	Hexadecenoate (n-C16:1)	C16H29O2	-1	
hdcoa	Hexadecenoyl-CoA (n-C16:1CoA)	C37H60N7O17P3S	-4	
hdd2coa	trans-Hexadec-2-enoyl-CoA	C37H60N7O17P3S	-4	
hdeACP	cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)	C27H49N2O8PRS	-1	
hemeO	Heme O	C49H56FeN4O5	-2	
hexACP	Hexanoyl-ACP (n-C6:0ACP)	C17H31N2O8PRS	-1	8/6/83
hg2	Hg2+	Hg	2	
hhlipa	heptosyl-heptosyl-kdo2-lipidA	C124H220N2O51P2	-6	
his-L	L-Histidine	C6H9N3O2	0	71-00-1
hisp	L-Histidinol phosphate	C6H11N3O4P	-1	25679-93-0
histd	L-Histidinol	C6H12N3O	1	None
histrna	L-Histidyl-tRNA(His)	C6H8N3OR	1	
hkndd	"2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate"	C9H8O6	-2	53-42-9
hkntd	2-hydroxy-6-ketononatrienedioate	C9H6O6	-2	
hlipa	heptosyl-kdo2-lipidA	C117H208N2O45P2	-6	
hmbil	Hydroxymethylbilane	C40H38N4O17	-8	73023-76-4
hmfurn	4-hydroxy-5-methyl-3(2H)-furanone	C5H6O3	0	
hmgth	hydroxymethylglutathione	C11H18N3O7S	-1	
hom-L	L-Homoserine	C4H9NO3	0	672-15-1
hphhlipa	heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA	C131H231N2O60P3	-8	
hpyr	Hydroxypyruvate	C3H3O4	-1	1113-60-6
hqn	Hydroquinone	C6H6O2	0	123-31-9
hx2coa	trans-Hex-2-enoyl-CoA	C27H40N7O17P3S	-4	
hxa	Hexanoate (n-C6:0)	C6H11O2	-1	142-62-1
hxan	Hypoxanthine	C5H4N4O	0	68-94-0
hxcoa	Hexanoyl-CoA (n-C6:0CoA)	C27H42N7O17P3S	-4	
iasp	Iminoaspartate	C4H3NO4	-2	
ichor	Isochorismate	C10H8O6	-2	
icit	Isocitrate	C6H5O7	-3	30810-51-6
icolipa	inner core oligosaccharide lipid A (E coli)	C145H251N2O74P4	-11	
idon-L	L-Idonate	C6H11O7	-1	1114-17-6
idp	IDP	C10H11N4O11P2	-3	86-04-4
ile-L	L-Isoleucine	C6H13NO2	0	73-32-5
iletrna	L-Isoleucyl-tRNA(Ile)	C6H12NOR	1	
imacp	3-(Imidazol-4-yl)-2-oxopropyl phosphate	C6H7N2O5P	-2	
imp	IMP	C10H11N4O8P	-2	131-99-7
indole	Indole	C8H7N	0	120-72-9
inost	myo-Inositol	C6H12O6	0	87-89-8
ins	Inosine	C10H12N4O5	0	58-63-9
ipdp	Isopentenyl diphosphate	C5H9O7P2	-3	
isetac	Isethionic acid	C2H5O4S	-1	107-36-8
itp	ITP	C10H11N4O14P3	-4	132-06-9
k	potassium	K	1	
kdo	3-Deoxy-D-manno-2-octulosonate	C8H13O8	-1	
kdo2lipid4	KDO(2)-lipid IV(A)	C84H148N2O37P2	-6	
kdo2lipid4L	KDO(2)-lipid IV(A) with laurate	C96H170N2O38P2	-6	
kdo2lipid4p	KDO(2)-lipid IV(A) with palmitoleoyl	C100H176N2O38P2	-6	
kdo8p	3-Deoxy-D-manno-octulosonate 8-phosphate	C8H12O11P	-3	
kdolipid4	KDO-lipid IV(A)	C76H137N2O30P2	-5	
kphphhlipa	kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA	C139H241N2O70P4	-11	
lac-D	D-Lactate	C3H5O3	-1	10326-41-7
lac-L	L-Lactate	C3H5O3	-1	79-33-4
lald-D	D-Lactaldehyde	C3H6O2	0	None
lald-L	L-Lactaldehyde	C3H6O2	0	598-35-6
lcts	Lactose	C12H22O11	0	63-42-3
leu-L	L-Leucine	C6H13NO2	0	61-90-5
leutrna	L-Leucyl-tRNA(Leu)	C6H12NOR	1	
lgt-S	(R)-S-Lactoylglutathione	C13H20N3O8S	-1	59-85-8
lipa	KDO(2)-lipid (A)	C110H196N2O39P2	-6	
lipa_cold	cold adapted KDO(2)-lipid (A)	C114H202N2O39P2	-6	
lipidA	"2,3,2'3'-Tetrakis(beta-hydroxymyristoyl)-D-glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate"	C68H126N2O23P2	-4	None
lipidAds	Lipid A Disaccharide	C68H127N2O20P	-2	
lipidX	"2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate"	C34H64NO12P	-2	None
lpp	lipoprotein	XC16H30O1	0	
lys-L	L-Lysine	C6H15N2O2	1	56-87-1
lystrna	L-Lysine-tRNA (Lys)	C6H14N2OR	2	
lyx-L	L-Lyxose	C5H10O5	0	1949-78-6
mal-D	D-Malate	C4H4O5	-2	636-61-3
mal-L	L-Malate	C4H4O5	-2	97-67-6
malACP	Malonyl-[acyl-carrier protein]	C14H22N2O10PRS	-2	None
malcoa	Malonyl-CoA	C24H33N7O19P3S	-5	524-14-1
malt	Maltose	C12H22O11	0	69-79-4
malt6p	Maltose 6'-phosphate	C12H21O14P	-2	None
malthp	Maltoheptaose	C42H72O36	0	
malthx	Maltohexaose	C36H62O31	0	34620-77-4
maltpt	Maltopentaose	C30H52O26	0	
malttr	Maltotriose	C18H32O16	0	1109-28-0
maltttr	Maltotetraose	C24H42O21	0	34612-38-9
man	D-Mannose	C6H12O6	0	3458-28-4
man1p	D-Mannose 1-phosphate	C6H11O9P	-2	
man6p	D-Mannose 6-phosphate	C6H11O9P	-2	None
man6pglyc	2(alpha-D-Mannosyl-6-phosphate)-D-glycerate	C9H14O12P	-3	
mana	D-Mannonate	C6H11O7	-1	
manglyc	2(alpha-D-Mannosyl)-D-glycerate	C9H15O9	-1	
melib	Melibiose	C12H22O11	0	585-99-9
mercppyr	Mercaptopyruvate	C3H3O3S	-1	
met-D	D-Methionine	C5H10NO2S	0	348-67-4
met-L	L-Methionine	C5H11NO2S	0	63-68-3
methf	"5,10-Methenyltetrahydrofolate"	C20H20N7O6	-1	
metsox-R-L	L-methionine-R-sulfoxide	C5H11NO3S	0	
metsox-S-L	L-Methionine Sulfoxide	C5H11NO3S	0	
mettrna	L-Methionyl-tRNA (Met)	C5H10NOSR	1	
mg2	magnesium	Mg	2	
mi1p-D	1D-myo-Inositol 1-phosphate	C6H11O9P	-2	
micit	methylisocitrate	C7H7O7	-3	20298-95-7
minohp	myo-Inositol hexakisphosphate	C6H6O24P6	-12	
mlthf	"5,10-Methylenetetrahydrofolate"	C20H21N7O6	-2	
mmcoa-R	(R)-Methylmalonyl-CoA	C25H35N7O19P3S	-5	
mmcoa-S	(S)-Methylmalonyl-CoA	C25H35N7O19P3S	-5	
mmet	S-Methyl-L-methionine	C6H14NO2S	1	
mn2	Mn2+	Mn	2	None
mnl	D-Mannitol	C6H14O6	0	69-65-8
mnl1p	D-Mannitol 1-phosphate	C6H13O9P	-2	
mobd	Molybdate	MoO4	-2	
mql8	Menaquinol 8	C51H74O2	0	
mqn8	Menaquinone 8	C51H72O2	0	84-81-1
mso3	methanesulfonate	CH3O3S	-1	
mthgxl	Methylglyoxal	C3H4O2	0	78-98-8
murein3p3p	"two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)"	C68H104N12O38	-4	
murein3px3p	"two disacharide linked murein units, tripeptide crosslinked tripeptide (A2pm->A2pm) (middle of chain)"	C68H102N12O37	-4	
murein3px4p	"two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)"	C71H107N13O38	-4	
murein4p3p	"two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)"	C71H109N13O39	-4	
murein4p4p	"two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)"	C74H114N14O40	-4	
murein4px4p	"two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)"	C74H112N14O39	-4	
murein4px4p4p	"three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala), one uncrosslinked tetrapaptide) (middle of chain)"	C111H169N21O59	-6	
murein4px4px4p	three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)	C111H167N21O58	-6	
murein5p3p	"two linked disacharide pentapeptide and tripeptide murein units (uncrosslinked, middle of chain)"	C74H114N14O40	-4	
murein5p4p	"two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)"	C77H119N15O41	-4	
murein5p5p	"two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)"	C80H124N16O42	-4	
murein5p5p5p	"three linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)"	C120H186N24O63	-6	
murein5px3p	"two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)"	C74H112N14O39	-4	
murein5px4p	"two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)"	C77H117N15O40	-4	
murein5px4px4p	three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)	C114H172N22O59	-6	
myrsACP	Myristoyl-ACP (n-C14:0ACP)	C25H47N2O8PRS	-1	
n2o	Nitrous oxide	N2O	0	10024-97-2
n8aspmd	N8-Acetylspermidine	C9H23N3O	2	34450-15-2
na1	Sodium	Na	1	7440-23-5
nac	Nicotinate	C6H4NO2	-1	59-67-6
nad	Nicotinamide adenine dinucleotide	C21H26N7O14P2	-1	53-84-9
nadh	Nicotinamide adenine dinucleotide - reduced	C21H27N7O14P2	-2	58-68-4
nadp	Nicotinamide adenine dinucleotide phosphate	C21H25N7O17P3	-3	53-59-8
nadph	Nicotinamide adenine dinucleotide phosphate - reduced	C21H26N7O17P3	-4	2646-71-1
ncam	Nicotinamide	C6H6N2O	0	98-92-0
nh4	Ammonium	H4N	1	14798-03-9
ni2	nickel	Ni	2	
nicrnt	Nicotinate D-ribonucleotide	C11H12NO9P	-2	
nmn	NMN	C11H14N2O8P	-1	1094-61-7
no	Nitric oxide	NO	0	10102-43-9
no2	Nitrite	NO2	-1	7697-37-2
no3	Nitrate	NO3	-1	
o16a2und	(O16 antigen)x2 undecaprenyl diphosphate	C123H200N2O57P2	-2	
o16a3und	(O16 antigen)x3 undecaprenyl diphosphate	C157H255N3O82P2	-2	
o16a4colipa	(O16 antigen)x4 core oligosaccharide lipid A	C312H523N6O200P4	-11	
o16a4und	(O16 antigen)x4 undecaprenyl diphosphate	C191H310N4O107P2	-2	
o16aund	O16 antigen undecaprenyl diphosphate	C89H145N1O32P2	-2	
o2	O2	O2	0	7782-44-7
o2s	Superoxide anion	O2	-1	
oaa	Oxaloacetate	C4H2O5	-2	328-42-7
oc2coa	trans-Oct-2-enoyl-CoA	C29H44N7O17P3S	-4	
ocACP	Octanoyl-ACP (n-C8:0ACP)	C19H35N2O8PRS	-1	
occoa	Octanoyl-CoA (n-C8:0CoA)	C29H46N7O17P3S	-4	
ocdca	octadecanoate (n-C18:0)	C18H35O2	-1	57-11-4
ocdcaACP	Octadecanoyl-ACP (n-C18:0ACP)	C29H55N2O8PRS	-1	
ocdcea	octadecenoate (n-C18:1)	C18H33O2	-1	
octa	octanoate (n-C8:0)	C8H15O2	-1	124-07-2
octdp	all-trans-Octaprenyl diphosphate	C40H65O7P2	-3	
octeACP	cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)	C29H53N2O8PRS	-1	
od2coa	trans-Octadec-2-enoyl-CoA	C39H64N7O17P3S	-4	
odecoa	Octadecenoyl-CoA (n-C18:1CoA)	C39H64N7O17P3S	-4	
ohpb	2-Oxo-3-hydroxy-4-phosphobutanoate	C4H4O8P	-3	
op4en	2-Oxopent-4-enoate	C5H5O3	-1	
orn	Ornithine	C5H13N2O2	1	70-26-8
orot	Orotate	C5H3N2O4	-1	65-86-1
orot5p	Orotidine 5'-phosphate	C10H10N2O11P	-3	2149-82-8
oxam	Oxamate	C2H2NO3	-1	471-47-6
oxur	Oxalureate	C3H3N2O4	-1	585-05-7
pa120	"1,2-didodecanoyl-sn-glycerol 3-phosphate"	C27H51O8P1	-2	
pa140	"1,2-ditetradecanoyl-sn-glycerol 3-phosphate"	C31H59O8P1	-2	
pa141	"1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate"	C31H55O8P1	-2	
pa160	"1,2-dihexadecanoyl-sn-glycerol 3-phosphate"	C35H67O8P1	-2	
pa161	"1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate"	C35H63O8P1	-2	
pa180	"1,2-dioctadecanoyl-sn-glycerol 3-phosphate"	C39H75O8P1	-2	
pa181	"1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate"	C39H71O8P1	-2	
pac	Phenylacetic acid	C8H7O2	-1	103-82-2
pacald	Phenylacetaldehyde	C8H8O	0	122-78-1
palmACP	Palmitoyl-ACP (n-C16:0ACP)	C27H51N2O8PRS	-1	
pan4p	Pantetheine 4'-phosphate	C11H21N2O7PS	-2	
pant-R	(R)-Pantoate	C6H11O4	-1	470-29-1
pap	"Adenosine 3',5'-bisphosphate"	C10H11N5O10P2	-4	1053-73-2
paps	3'-Phosphoadenylyl sulfate	C10H11N5O13P2S	-4	482-67-7
pdx5p	Pyridoxine 5'-phosphate	C8H10NO6P	-2	447-05-2
pe120	"phosphatidylethanolamine (didodecanoyl, n-C12:0)"	C29H58N1O8P1	0	
pe140	"phosphatidylethanolamine (ditetradecanoyl, n-C14:0)"	C33H66N1O8P1	0	
pe141	"phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)"	C33H62N1O8P1	0	
pe160	"phosphatidylethanolamine (dihexadecanoyl, n-C16:0)"	C37H74N1O8P1	0	
pe161	"phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)"	C37H70N1O8P1	0	
pe180	"phosphatidylethanolamine (dioctadecanoyl, n-C18:0)"	C41H82N1O8P1	0	
pe181	"phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)"	C41H78N1O8P1	0	
peamn	Phenethylamine	C8H12N	1	64-04-0
pep	Phosphoenolpyruvate	C3H2O6P	-3	138-08-9
pg120	"Phosphatidylglycerol (didodecanoyl, n-C12:0)"	C30H58O10P1	-1	
pg140	"Phosphatidylglycerol (ditetradecanoyl, n-C14:0)"	C34H66O10P1	-1	
pg141	"Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)"	C34H62O10P1	-1	
pg160	"Phosphatidylglycerol (dihexadecanoyl, n-C16:0)"	C38H74O10P1	-1	
pg161	"Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)"	C38H70O10P1	-1	
pg180	"Phosphatidylglycerol (dioctadecanoyl, n-C18:0)"	C42H82O10P1	-1	
pg181	"Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)"	C42H78O10P1	-1	
pgp120	"Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)"	C30H57O13P2	-3	
pgp140	"Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)"	C34H65O13P2	-3	
pgp141	"Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)"	C34H61O13P2	-3	
pgp160	"Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)"	C38H73O13P2	-3	
pgp161	"Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)"	C38H69O13P2	-3	
pgp180	"Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)"	C42H81O13P2	-3	
pgp181	"Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)"	C42H77O13P2	-3	
phaccoa	Phenylacetyl-CoA	C29H38N7O17P3S	-4	
phe-L	L-Phenylalanine	C9H11NO2	0	63-91-2
pheme	Protoheme	C34H30FeN4O4	-2	14875-96-8
phetrna	L-Phenylalanyl-tRNA(Phe)	C9H10NOR	1	
phhlipa	phospho-heptosyl-heptosyl-kdo2-lipidA	C124H219N2O54P3	-8	
phom	O-Phospho-L-homoserine	C4H8NO6P	-2	
phphhlipa	phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA	C131H230N2O63P4	-10	
phpyr	Phenylpyruvate	C9H7O3	-1	156-06-9
phthr	O-Phospho-4-hydroxy-L-threonine	C4H8NO7P	-2	
pi	Phosphate	HO4P	-2	14265-44-2
pmcoa	Pimeloyl-CoA	C28H41N7O19P3S	-5	
pmtcoa	Palmitoyl-CoA (n-C16:0CoA)	C37H62N7O17P3S	-4	
pnto-R	(R)-Pantothenate	C9H16NO5	-1	79-83-4
ppa	Propionate (n-C3:0)	C3H5O2	-1	79-09-4
ppal	Propanal	C3H6O	0	123-38-6
ppap	Propanoyl phosphate	C3H5O5P	-2	
ppbng	Porphobilinogen	C10H13N2O4	-1	487-90-1
ppcoa	Propanoyl-CoA	C24H36N7O17P3S	-4	317-66-8
ppgpp	"Guanosine 3',5'-bis(diphosphate)"	C10H11N5O17P4	-6	
pphn	Prephenate	C10H8O6	-2	126-49-8
ppi	Diphosphate	HO7P2	-3	9/3/66
ppp9	Protoporphyrin	C34H32N4O4	-2	553-12-8
pppg9	Protoporphyrinogen IX	C34H38N4O4	-2	
pppi	Inorganic triphosphate	HO10P3	-4	
pppn	Phenylpropanoate	C9H9O2	-1	2628-17-3
ppt	Phosphonate	HO3P	-2	13598-36-2
pram	5-Phospho-beta-D-ribosylamine	C5H11NO7P	-1	
pran	N-(5-Phospho-D-ribosyl)anthranilate	C12H13NO9P	-3	None
prbamp	1-(5-Phosphoribosyl)-AMP	C15H19N5O14P2	-4	
prbatp	1-(5-Phosphoribosyl)-ATP	C15H19N5O20P4	-6	
prfp	1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide	C15H21N5O15P2	-4	
prlp	5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide	C15H21N5O15P2	-4	
pro-L	L-Proline	C5H9NO2	0	147-85-3
progly	L-Prolinylglycine	C7H12N2O3	0	
protrna	L-Prolyl-tRNA(Pro)	C5H8NOR	1	
prpp	5-Phospho-alpha-D-ribose 1-diphosphate	C5H8O14P3	-5	
ps120	"phosphatidylserine (didodecanoyl, n-C12:0)"	C30H57N1O10P1	-1	
ps140	"phosphatidylserine (ditetradecanoyl, n-C14:0)"	C34H65N1O10P1	-1	
ps141	"phosphatidylserine (ditetradec-7-enoyl, n-C14:1)"	C34H61N1O10P1	-1	
ps160	"phosphatidylserine (dihexadecanoyl, n-C16:0)"	C38H73N1O10P1	-1	
ps161	"phosphatidylserine (dihexadec-9-enoyl, n-C16:1)"	C38H69N1O10P1	-1	
ps180	"phosphatidylserine (dioctadecanoyl, n-C18:0)"	C42H81N1O10P1	-1	
ps181	"phosphatidylserine (dioctadec-11-enoyl, n-C18:1)"	C42H77N1O10P1	-1	
pser-L	O-Phospho-L-serine	C3H6NO6P	-2	407-41-0
ptrc	Putrescine	C4H14N2	2	110-60-1
pyam5p	Pyridoxamine 5'-phosphate	C8H12N2O5P	-1	529-96-4
pydam	Pyridoxamine	C8H13N2O2	1	85-87-0
pydx	Pyridoxal	C8H9NO3	0	66-72-8
pydx5p	Pyridoxal 5'-phosphate	C8H8NO6P	-2	54-47-7
pydxn	Pyridoxine	C8H11NO3	0	65-23-6
pyr	Pyruvate	C3H3O3	-1	127-17-3
q8	Ubiquinone-8	C49H74O4	0	1339-63-5
q8h2	Ubiquinol-8	C49H76O4	0	
quln	Quinolinate	C7H3NO4	-2	89-00-9
r15bp	"D-Ribose 1,5-bisphosphate"	C5H8O11P2	-4	None
r1p	alpha-D-Ribose 1-phosphate	C5H9O8P	-2	58459-37-3
r5p	alpha-D-Ribose 5-phosphate	C5H9O8P	-2	4300-28-1
ragund	rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate	C69H113N1O16P2	-2	
rbflvrd	Reduced riboflavin	C17H22N4O6	0	
rbl-L	L-Ribulose	C5H10O5	0	
rdmbzi	"N1-(alpha-D-ribosyl)-5,6-dimethylbenzimidazole"	C14H18N2O4	0	
rhcys	S-Ribosyl-L-homocysteine	C9H17NO6S	0	37558-16-0
rib-D	D-Ribose	C5H10O5	0	50-69-1
ribflv	Riboflavin	C17H20N4O6	0	83-88-5
rml	L-Rhamnulose	C6H12O5	0	
rml1p	L-Rhamnulose 1-phosphate	C6H11O8P	-2	
rmn	L-Rhamnose	C6H12O5	0	3615-41-6
ru5p-D	D-Ribulose 5-phosphate	C5H9O8P	-2	4151-19-3
ru5p-L	L-Ribulose 5-phosphate	C5H9O8P	-2	
s	Sulfur	S	0	7704-34-9
s7p	Sedoheptulose 7-phosphate	C7H13O10P	-2	None
sarcs	Sarcosine	C3H7NO2	0	107-97-1
sbt-D	D-Sorbitol	C6H14O6	0	50-70-4
sbt6p	D-Sorbitol 6-phosphate	C6H13O9P	-2	108392-12-7
sbzcoa	O-Succinylbenzoyl-CoA	C32H39N7O20P3S	-5	
scl	sirohydrochlorin	C42H39N4O16	-7	
sectrna	L-Selenocysteinyl-tRNA(Sec)	C3H6NOSeR	1	
seln	Selenide	HSe	-1	531-44-2
selnp	Selenophosphate	H2O3PSe	-1	
ser-D	D-Serine	C3H7NO3	0	312-84-5
ser-L	L-Serine	C3H7NO3	0	56-45-1
seramp	L-seryl-AMP	C13H19N6O9P	0	
sertrna	L-Seryl-tRNA(Ser)	C3H6NO2R	1	
sertrna(sec)	L-Seryl-tRNA(Sec)	C3H6NO2R	1	
sheme	Siroheme	C42H36FeN4O16	-8	
skm	Shikimate	C7H9O5	-1	138-59-0
skm5p	Shikimate 5-phosphate	C7H8O8P	-3	
sl26da	"N-Succinyl-LL-2,6-diaminoheptanedioate"	C11H16N2O7	-2	
sl2a6o	N-Succinyl-2-L-amino-6-oxoheptanedioate	C11H12NO8	-3	
so2	sulfur dioxide	O2S	0	
so3	Sulfite	O3S	-2	7782-99-2
so4	Sulfate	O4S	-2	7664-93-9
spmd	Spermidine	C7H22N3	3	124-20-9
ssaltpp	Succinate semialdehyde-thiamin diphosphate anion	C16H21N4O10P2S	-3	
stcoa	Stearoyl-CoA (n-C18:0CoA)	C39H66N7O17P3S	-4	362-66-3
suc6p	Sucrose 6-phosphate	C12H21O14P	-2	
sucarg	N2-Succinyl-L-arginine	C10H17N4O5	-1	1758-80-1
sucbz	o-Succinylbenzoate	C11H8O5	-2	
succ	Succinate	C4H4O4	-2	110-15-6
succoa	Succinyl-CoA	C25H35N7O19P3S	-5	604-98-8
sucglu	N2-Succinyl-L-glutamate	C9H10NO7	-3	33981-72-5
sucgsa	N2-Succinyl-L-glutamate 5-semialdehyde	C9H11NO6	-2	
suchms	O-Succinyl-L-homoserine	C8H12NO6	-1	1492-23-5
sucorn	N2-Succinyl-L-ornithine	C9H15N2O5	-1	80102-04-1
sucr	Sucrose	C12H22O11	0	57-50-1
sucsal	Succinic semialdehyde	C4H5O3	-1	692-29-5
sulfac	sulfoacetate	C2H2O5S	-2	
t3c11vaceACP	trans-3-cis-11-vacceoyl-[acyl-carrier protein]	C29H51N2O8PRS	-1	
t3c5ddeceACP	trans-3-cis-5-dodecenoyl-[acyl-carrier protein]	C23H39N2O8PRS	-1	
t3c7mrseACP	trans-3-cis-7-myristoleoyl-[acyl-carrier protein]	C25H43N2O8PRS	-1	
t3c9palmeACP	trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]	C27H47N2O8PRS	-1	
tag6p-D	D-Tagatose 6-phosphate	C6H11O9P	-2	
tagdp-D	"D-Tagatose 1,6-biphosphate"	C6H10O12P2	-4	
tagur	D-Tagaturonate	C6H9O7	-1	None
tartr-L	L-tartrate	C4H4O6	-2	87-69-4
taur	Taurine	C2H7NO3S	0	107-35-7
tcynt	Thiocyanate	CNS	-1	463-56-9
td2coa	trans-Tetradec-2-enoyl-CoA	C35H56N7O17P3S	-4	
tdcoa	Tetradecanoyl-CoA (n-C14:0CoA)	C35H58N7O17P3S	-4	
tddec2eACP	trans-Dodec-2-enoyl-[acyl-carrier protein]	C23H41N2O8PRS	-1	8/6/83
tdeACP	cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)	C25H45N2O8PRS	-1	
tdec2eACP	trans-Dec-2-enoyl-[acyl-carrier protein]	C21H37N2O8PRS	-1	8/6/83
tdecoa	Tetradecenoyl-CoA (n-C14:1CoA)	C35H56N7O17P3S	-4	
thdp	"2,3,4,5-Tetrahydrodipicolinate"	C7H7NO4	-2	
thex2eACP	trans-Hex-2-enoyl-[acyl-carrier protein]	C17H29N2O8PRS	-1	8/6/83
thf	"5,6,7,8-Tetrahydrofolate"	C19H21N7O6	-2	135-16-0
thm	Thiamin	C12H17N4OS	1	67-03-8
thmmp	Thiamin monophosphate	C12H16N4O4PS	-1	532-40-1
thmpp	Thiamine diphosphate	C12H16N4O7P2S	-2	154-87-0
thr-L	L-Threonine	C4H9NO3	0	72-19-5
thrp	L-Threonine O-3-phosphate	C4H8NO6P	-2	
thrtrna	L-Threonyl-tRNA(Thr)	C4H8NO2R	1	
thym	Thymine	C5H6N2O2	0	65-71-4
thymd	Thymidine	C10H14N2O5	0	50-89-5
tma	trimethylamine	C3H10N	1	75-50-3
tmao	Trimethylamine N-oxide	C3H9NO	0	1184-78-7
tmrs2eACP	trans-Tetradec-2-enoyl-[acyl-carrier protein]	C25H45N2O8PRS	-1	8/6/83
toct2eACP	trans-Oct-2-enoyl-[acyl-carrier protein]	C19H33N2O8PRS	-1	8/6/83
toctd2eACP	trans-octadec-2-enoyl-[acyl-carrier protein]	C29H53N2O8PRS	-1	
tpalm2eACP	trans-Hexadec-2-enoyl-[acyl-carrier protein]	C27H49N2O8PRS	-1	8/6/83
trdox	Oxidized thioredoxin	X	0	
trdrd	Reduced thioredoxin	XH2	0	
tre	Trehalose	C12H22O11	0	99-20-7
tre6p	"alpha,alpha'-Trehalose 6-phosphate"	C12H21O14P	-2	4484-88-2
trnaala	tRNA(Ala)	R	0	
trnaarg	tRNA(Arg)	R	0	
trnaasn	tRNA(Asn)	R	0	
trnaasp	tRNA(Asp)	R	0	
trnacys	tRNA(Cys)	R	0	
trnagln	tRNA(Gln)	R	0	
trnaglu	tRNA (Glu)	R	0	None
trnagly	tRNA(Gly)	R	0	
trnahis	tRNA(His)	R	0	
trnaile	tRNA(Ile)	R	0	
trnaleu	tRNA(Leu)	R	0	
trnalys	tRNA(Lys)	R	0	
trnamet	tRNA(Met)	R	0	
trnaphe	tRNA(Phe)	R	0	
trnapro	tRNA(Pro)	R	0	
trnasecys	tRNA(SeCys)	R	0	
trnaser	tRNA(Ser)	R	0	
trnathr	tRNA(Thr)	R	0	
trnatrp	tRNA(Trp)	R	0	
trnatyr	tRNA(Tyr)	R	0	
trnaval	tRNA(Val)	R	0	
trp-L	L-Tryptophan	C11H12N2O2	0	73-22-3
trptrna	L-Tryptophanyl-tRNA(Trp)	C11H11N2OR	1	
tsul	Thiosulfate	O3S2	-2	
ttdca	tetradecanoate (n-C14:0)	C14H27O2	-1	544-63-8
ttdcea	tetradecenoate (n-C14:1)	C14H25O2	-1	
tungs	tungstate	O4W1	-2	
tym	Tyramine	C8H12NO	1	51-67-2
tyr-L	L-Tyrosine	C9H11NO3	0	60-18-4
tyrp	Phosphotyrosine	C9H10NO6P	-2	
tyrtrna	L-Tyrosyl-tRNA(Tyr)	C9H10NO2R	1	
u23ga	"UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine"	C43H75N3O20P2	-2	
u3aga	UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine	C31H51N3O19P2	-2	
u3hga	UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine	C29H50N3O18P2	-1	
uLa4fn	undecaprenyl phosphate-4-amino-4-formyl-L-arabinose	C61H99N1O8P1	-1	
uLa4n	undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose	C60H100N1O7P1	0	
uaagmda	"Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala"	C95H152N8O28P2	-4	
uaccg	UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine	C20H26N3O19P2	-3	
uacgam	UDP-N-acetyl-D-glucosamine	C17H25N3O17P2	-2	
uacmam	UDP-N-acetyl-D-mannosamine	C17H25N3O17P2	-2	
uacmamu	UDP-N-acetyl-D-mannosaminouronate	C17H22N3O18P2	-3	
uagmda	"Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine"	C87H139N7O23P2	-4	
uama	UDP-N-acetylmuramoyl-L-alanine	C23H33N4O20P2	-3	
uamag	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate	C28H39N5O23P2	-4	
uamr	UDP-N-acetylmuramate	C20H28N3O19P2	-3	
udcpdp	Undecaprenyl diphosphate	C55H89O7P2	-3	
udcpp	Undecaprenyl phosphate	C55H89O4P	-2	
udp	UDP	C9H11N2O12P2	-3	58-98-0
udpLa4fn	uridine 5''-diphospho-{beta}-4-deoxy-4-formamido-L-arabinose	C15H21N3O16P2	-2	
udpLa4n	uridine 5''-diphospho-{beta}-4-deoxy-4-amino-L-arabinose	C14H22N3O15P2	-1	
udpLa4o	UDP-4-keto-pyranose	C14H18N2O16P2	-2	
udpacgal	UDP-N-acetyl-D-galactosamine	C17H25N3O17P2	-2	None
udpg	UDPglucose	C15H22N2O17P2	-2	
udpgal	UDPgalactose	C15H22N2O17P2	-2	
udpgalfur	"UDP-D-galacto-1,4-furanose"	C15H22N2O17P2	-2	638-23-3
udpglcur	UDP-D-glucuronate	C15H19N2O18P2	-3	
ugmd	"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate"	C35H51N7O26P2	-4	
ugmda	"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine"	C41H61N9O28P2	-4	
um4p	"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine"	C38H56N8O27P2	-4	
ump	UMP	C9H11N2O9P	-2	58-97-9
unaga	Undecaprenyl diphospho N-acetyl-glucosamine	C63H103NO12P2	-2	
unagamu	Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate	C71H113N2O18P2	-3	
unagamuf	"Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose"	C79H126N3O22P2	-3	
uppg3	Uroporphyrinogen III	C40H36N4O16	-8	1976-85-8
ura	Uracil	C4H4N2O2	0	66-22-8
urate	Urate	C5H4N4O3	0	69-93-2
urdglyc	(-)-Ureidoglycolate	C3H5N2O4	-1	
urea	Urea	CH4N2O	0	57-13-6
uri	Uridine	C9H12N2O6	0	58-96-8
utp	UTP	C9H11N2O15P3	-4	63-39-8
val-L	L-Valine	C5H11NO2	0	72-18-4
valtrna	L-Valyl-tRNA(Val)	C5H10NOR	1	
xan	Xanthine	C5H4N4O2	0	69-89-6
xdp	XDP	C10H11N4O12P2	-3	
xmp	Xanthosine 5'-phosphate	C10H11N4O9P	-2	523-98-8
xtp	XTP	C10H11N4O15P3	-4	
xtsn	Xanthosine	C10H12N4O6	0	146-80-5
xu5p-D	D-Xylulose 5-phosphate	C5H9O8P	-2	None
xu5p-L	L-Xylulose 5-phosphate	C5H9O8P	-2	None
xyl-D	D-Xylose	C5H10O5	0	58-86-6
xylu-D	D-Xylulose	C5H10O5	0	551-84-8
xylu-L	L-Xylulose	C5H10O5	0	527-50-4
zn2	Zinc	Zn	2	7440-66-6